Wall clock time and date at job start Mon Mar 30 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47306 * 2 1 4 4 O 1.21241 * 119.99524 * 359.97438 * 3 2 1 5 5 C 1.47276 * 120.00361 * 180.02562 * 3 2 1 6 6 C 1.38846 * 120.16324 * 353.85475 * 5 3 2 7 7 C 1.40795 * 119.58738 * 179.79882 * 6 5 3 8 8 C 1.41074 * 120.03760 * 180.22493 * 7 6 5 9 9 H 1.07998 * 120.00448 * 215.09269 * 8 7 6 10 10 C 1.40292 * 120.00041 * 35.09347 * 8 7 6 11 11 N 1.30606 * 120.00073 * 355.40054 * 10 8 7 12 12 Si 1.86805 * 120.00485 * 175.40022 * 10 8 7 13 13 H 1.48501 * 109.46967 * 89.99574 * 12 10 8 14 14 H 1.48493 * 109.47489 * 210.00383 * 12 10 8 15 15 H 1.48505 * 109.46770 * 330.00532 * 12 10 8 16 16 C 1.40894 * 119.92649 * 0.50045 * 7 6 5 17 17 C 1.36483 * 120.33533 * 359.73163 * 16 7 6 18 18 C 1.39662 * 120.41881 * 0.02562 * 17 16 7 19 19 C 1.47528 * 119.96679 * 179.97438 * 18 17 16 20 20 O 1.21503 * 119.99803 * 124.90084 * 19 18 17 21 21 O 1.34780 * 120.00212 * 304.90388 * 19 18 17 22 22 H 1.08997 * 109.46857 * 300.00490 * 1 2 3 23 23 H 1.08998 * 109.46491 * 60.00382 * 1 2 3 24 24 H 1.08992 * 109.46993 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47314 * 239.99787 * 2 1 3 26 26 H 1.08998 * 109.46948 * 119.99342 * 2 1 3 27 27 H 1.07997 * 120.20522 * 0.02725 * 6 5 3 28 28 H 0.97001 * 120.00506 * 179.97438 * 11 10 8 29 29 H 1.08001 * 119.83366 * 179.69963 * 16 7 6 30 30 H 1.07995 * 119.79036 * 179.97438 * 17 16 7 31 31 H 0.96696 * 117.00194 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2445 2.3423 -0.0005 5 6 3.4804 1.6900 -0.0006 6 6 4.3845 0.6440 0.1274 7 6 5.7662 0.9147 0.1211 8 6 6.6932 -0.1414 0.2457 9 1 7.6163 0.0112 0.7850 10 6 6.4160 -1.3899 -0.3311 11 7 5.2624 -1.6022 -0.9054 12 14 7.6968 -2.7486 -0.2777 13 1 7.5117 -3.5552 0.9554 14 1 7.5419 -3.6221 -1.4685 15 1 9.0552 -2.1486 -0.2772 16 6 6.2218 2.2420 -0.0040 17 6 5.3303 3.2684 -0.1248 18 6 3.9568 3.0156 -0.1253 19 6 3.0020 4.1326 -0.2559 20 8 2.1662 4.1174 -1.1377 21 8 3.0567 5.1699 0.6029 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 4.0301 -0.3713 0.2274 28 1 5.0708 -2.4653 -1.3045 29 1 7.2819 2.4484 -0.0038 30 1 5.6893 4.2825 -0.2197 31 1 2.4102 5.8780 0.4778 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396125906.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:18 Heat of formation + Delta-G solvation = -122.618909 kcal Electronic energy + Delta-G solvation = -17763.287835 eV Core-core repulsion = 14781.020393 eV Total energy + Delta-G solvation = -2982.267442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70982 -38.40144 -37.14253 -35.13134 -33.92115 -32.41478 -30.51793 -29.98963 -26.31513 -24.68968 -22.64358 -21.97358 -20.19365 -18.77988 -17.45786 -17.28850 -16.33573 -15.70965 -15.00960 -14.80188 -14.73504 -14.20047 -13.56609 -13.32893 -12.98049 -12.71150 -12.60042 -11.90754 -11.81483 -11.65617 -11.37058 -11.21498 -11.08761 -10.74631 -10.73127 -10.60150 -10.32453 -10.19847 -9.66313 -9.45039 -8.74264 -7.93222 -7.66806 -7.00130 -4.75608 1.62895 2.43068 2.87497 2.93274 2.96973 3.33134 3.42287 3.72475 3.99963 4.41958 4.77004 5.25255 5.48653 5.58866 5.79921 5.91000 6.18797 6.21293 6.25207 6.37287 6.46456 6.54968 6.67610 6.75563 6.93812 7.13403 7.21443 7.37785 7.49111 7.64964 7.84792 8.20281 8.33690 8.50188 8.54445 8.80399 9.90445 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.007908 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.818525 B = 3539.964530 C = 4590.698723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.165 4.165 3 C 0.390 3.610 4 O -0.456 6.456 5 C -0.113 4.113 6 C -0.105 4.105 7 C 0.108 3.892 8 C -0.448 4.448 9 H 0.085 0.915 10 C 0.070 3.930 11 N -0.795 5.795 12 Si 0.922 3.078 13 H -0.266 1.266 14 H -0.275 1.275 15 H -0.260 1.260 16 C -0.201 4.201 17 C -0.056 4.056 18 C -0.197 4.197 19 C 0.540 3.460 20 O -0.513 6.513 21 O -0.524 6.524 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.286 0.714 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -0.057 2.215 2.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.202 4.202 3 C 0.268 3.732 4 O -0.332 6.332 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.105 3.895 8 C -0.477 4.477 9 H 0.103 0.897 10 C -0.148 4.148 11 N -0.420 5.420 12 Si 0.746 3.254 13 H -0.191 1.191 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.221 4.221 17 C -0.075 4.075 18 C -0.199 4.199 19 C 0.385 3.615 20 O -0.401 6.401 21 O -0.335 6.335 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.165 0.835 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.652 -0.109 1.891 2.513 hybrid contribution 0.263 -0.215 -0.252 0.423 sum -1.389 -0.323 1.639 2.172 Atomic orbital electron populations 1.21569 0.94676 1.00917 1.02507 1.21907 0.96940 0.96421 1.04976 1.22699 0.88728 0.90810 0.70929 1.90496 1.58744 1.47495 1.36462 1.20075 0.93807 0.92664 1.04937 1.22015 0.92460 0.97864 1.00138 1.17781 0.92293 0.91943 0.87441 1.19723 1.04198 0.94259 1.29517 0.89669 1.26048 0.96292 0.99484 0.92982 1.69568 1.21461 1.24650 1.26346 0.86067 0.80991 0.79559 0.78803 1.19125 1.19952 1.18400 1.20951 0.98003 0.93264 1.09854 1.20298 0.91236 0.98093 0.97834 1.18279 0.91855 0.89448 1.20354 1.21121 0.81956 0.80574 0.77880 1.90790 1.36803 1.78103 1.34362 1.84722 1.59165 1.32546 1.57051 0.92691 0.92484 0.92632 0.88094 0.88651 0.83541 0.90211 0.87544 0.87861 0.74962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.20 37.16 0.34 -1.81 16 2 C -0.17 -2.89 5.11 -27.88 -0.14 -3.03 16 3 C 0.39 8.49 7.02 -30.64 -0.21 8.28 16 4 O -0.46 -10.86 12.59 -18.48 -0.23 -11.10 16 5 C -0.11 -2.64 5.89 -104.79 -0.62 -3.26 16 6 C -0.11 -2.46 8.08 -38.39 -0.31 -2.77 16 7 C 0.11 2.58 5.55 -106.85 -0.59 1.99 16 8 C -0.45 -10.44 9.03 -37.74 -0.34 -10.78 16 9 H 0.09 1.88 7.85 -52.49 -0.41 1.47 16 10 C 0.07 1.55 5.42 -17.30 -0.09 1.46 16 11 N -0.80 -17.94 10.60 55.56 0.59 -17.36 16 12 Si 0.92 16.68 29.56 -169.99 -5.03 11.65 16 13 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 14 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 15 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 16 C -0.20 -4.46 9.71 -39.21 -0.38 -4.85 16 17 C -0.06 -1.22 9.69 -39.68 -0.38 -1.60 16 18 C -0.20 -4.60 5.80 -104.37 -0.61 -5.20 16 19 C 0.54 12.19 6.38 34.52 0.22 12.41 16 20 O -0.51 -12.79 15.50 -27.28 -0.42 -13.21 16 21 O -0.52 -9.69 13.44 -40.71 -0.55 -10.24 16 22 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 23 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 26 H 0.10 1.54 7.90 -51.93 -0.41 1.13 16 27 H 0.15 3.36 5.07 -52.49 -0.27 3.09 16 28 H 0.29 5.87 8.29 -40.82 -0.34 5.54 16 29 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.39 5.24 9.11 45.56 0.42 5.66 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -28.80 276.72 -6.93 -35.73 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.34 Total: 9.51 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.12 Total: -9.16 kcal Atomic # 7 Polarization: -17.94 SS G_CDS: 0.59 Total: -17.36 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.20 Total: -34.54 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.80 -6.93 -35.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396125906.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.885 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds