Wall clock time and date at job start Mon Mar 30 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46918 * 2 1 4 4 O 1.21321 * 120.00146 * 0.02562 * 3 2 1 5 5 C 1.46703 * 119.99990 * 180.02562 * 3 2 1 6 6 C 1.39318 * 120.56455 * 354.43881 * 5 3 2 7 7 C 1.39487 * 119.77297 * 179.75129 * 6 5 3 8 8 C 1.47599 * 119.51087 * 180.25459 * 7 6 5 9 9 O 1.21492 * 120.00415 * 0.27527 * 8 7 6 10 10 O 1.34764 * 119.99767 * 180.27077 * 8 7 6 11 11 C 1.40046 * 120.97165 * 0.53060 * 7 6 5 12 12 C 1.36224 * 121.19177 * 359.72438 * 11 7 6 13 13 C 1.40893 * 120.14495 * 0.02562 * 12 11 7 14 14 C 1.40597 * 120.47555 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99626 * 147.47931 * 14 13 12 16 16 C 1.40559 * 120.00316 * 327.47549 * 14 13 12 17 17 N 1.30460 * 120.00074 * 350.31252 * 16 14 13 18 18 Si 1.86796 * 120.00094 * 170.30896 * 16 14 13 19 19 H 1.48503 * 109.47403 * 90.00614 * 18 16 14 20 20 H 1.48506 * 109.47205 * 210.00129 * 18 16 14 21 21 H 1.48495 * 109.47435 * 330.00302 * 18 16 14 22 22 H 1.09000 * 109.46693 * 299.99595 * 1 2 3 23 23 H 1.09000 * 109.47100 * 59.99939 * 1 2 3 24 24 H 1.09005 * 109.46933 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47185 * 240.00569 * 2 1 3 26 26 H 1.09002 * 109.47506 * 119.99740 * 2 1 3 27 27 H 1.07997 * 120.11069 * 359.97438 * 6 5 3 28 28 H 0.96694 * 116.99660 * 180.02562 * 10 8 7 29 29 H 1.07997 * 119.39949 * 179.69836 * 11 7 6 30 30 H 1.08005 * 119.92540 * 179.97438 * 12 11 7 31 31 H 0.96998 * 120.00600 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2439 2.3429 0.0005 5 6 3.4746 1.6889 -0.0006 6 6 4.3894 0.6445 0.1151 7 6 5.7572 0.9178 0.1075 8 6 6.7213 -0.1936 0.2248 9 8 6.3217 -1.3368 0.3219 10 8 8.0449 0.0597 0.2240 11 6 6.2290 2.2316 -0.0040 12 6 5.3697 3.2829 -0.1141 13 6 3.9782 3.0621 -0.1168 14 6 3.0851 4.1420 -0.2295 15 1 2.1412 4.0114 -0.7381 16 6 3.4203 5.3916 0.3198 17 7 4.4647 5.5052 1.0933 18 14 2.3705 6.8898 -0.0577 19 1 1.2951 7.0099 0.9593 20 1 3.2184 8.1087 -0.0277 21 1 1.7635 6.7422 -1.4049 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0407 -0.3735 0.2068 28 1 8.6374 -0.7005 0.3027 29 1 7.2934 2.4146 -0.0023 30 1 5.7560 4.2880 -0.1985 31 1 4.6959 6.3674 1.4728 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396126709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:09 Heat of formation + Delta-G solvation = -129.056279 kcal Electronic energy + Delta-G solvation = -17493.976514 eV Core-core repulsion = 14511.429926 eV Total energy + Delta-G solvation = -2982.546587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40849 -38.53171 -36.63259 -35.31616 -34.16296 -32.24122 -30.33705 -29.90826 -26.58226 -24.34707 -22.87666 -21.67114 -20.12065 -18.70136 -17.69908 -17.13818 -16.30127 -15.57193 -14.80262 -14.73689 -14.62459 -14.33449 -13.97427 -13.07897 -12.89687 -12.68959 -12.45201 -12.00572 -11.69916 -11.50038 -11.38196 -11.17687 -11.07145 -10.92846 -10.67570 -10.63089 -10.24511 -10.14891 -9.71328 -9.57699 -8.38276 -7.87220 -7.64576 -7.24718 -4.84216 1.95135 2.09368 2.85752 2.88813 2.95236 3.47893 3.65683 3.76199 3.92733 4.37714 5.03663 5.29739 5.56983 5.62414 5.89807 5.98342 6.07799 6.21336 6.22592 6.39007 6.56873 6.60573 6.69021 6.75561 6.86384 7.12992 7.25101 7.38224 7.58805 7.68096 7.82141 8.20448 8.38390 8.51002 8.73226 8.83801 9.64571 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.008904 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.155533 B = 3143.737587 C = 4688.785058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.171 4.171 3 C 0.395 3.605 4 O -0.474 6.474 5 C -0.305 4.305 6 C 0.038 3.962 7 C -0.278 4.278 8 C 0.529 3.471 9 O -0.560 6.560 10 O -0.523 6.523 11 C -0.039 4.039 12 C -0.170 4.170 13 C 0.150 3.850 14 C -0.376 4.376 15 H 0.113 0.887 16 C 0.064 3.936 17 N -0.754 5.754 18 Si 0.926 3.074 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.254 1.254 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.396 0.604 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -2.445 -1.375 2.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.209 4.209 3 C 0.278 3.722 4 O -0.354 6.354 5 C -0.308 4.308 6 C 0.020 3.980 7 C -0.281 4.281 8 C 0.380 3.620 9 O -0.455 6.455 10 O -0.334 6.334 11 C -0.059 4.059 12 C -0.189 4.189 13 C 0.145 3.855 14 C -0.401 4.401 15 H 0.130 0.870 16 C -0.160 4.160 17 N -0.375 5.375 18 Si 0.749 3.251 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.177 1.177 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.252 0.748 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.329 -1.741 -1.232 2.159 hybrid contribution 0.346 -0.034 0.145 0.377 sum 0.017 -1.775 -1.088 2.082 Atomic orbital electron populations 1.21533 0.94767 1.00488 1.02683 1.21976 0.97191 0.98150 1.03549 1.21806 0.88436 0.89459 0.72484 1.90414 1.58516 1.47054 1.39411 1.20946 0.92917 0.93912 1.22983 1.20974 0.91100 0.97337 0.88636 1.18036 0.90880 0.91030 1.28122 1.21284 0.80500 0.88741 0.71458 1.90747 1.79819 1.24175 1.50776 1.84651 1.18932 1.43268 1.86500 1.20603 0.98510 0.91592 0.95162 1.21014 0.92800 0.98088 1.07018 1.18786 0.92190 0.90356 0.84162 1.20533 1.03778 0.92047 1.23727 0.86966 1.26448 0.95175 1.01357 0.93038 1.69638 1.21495 1.27818 1.18583 0.85981 0.79991 0.78178 0.80976 1.18669 1.19672 1.17717 0.92480 0.92494 0.93150 0.89547 0.89592 0.86913 0.74832 0.87785 0.85947 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 37.16 0.34 -1.74 16 2 C -0.17 -2.88 5.12 -27.88 -0.14 -3.02 16 3 C 0.40 8.57 7.08 -30.89 -0.22 8.35 16 4 O -0.47 -11.39 13.39 5.52 0.07 -11.31 16 5 C -0.31 -7.13 6.06 -102.65 -0.62 -7.75 16 6 C 0.04 0.84 8.99 -38.71 -0.35 0.49 16 7 C -0.28 -6.16 5.87 -104.94 -0.62 -6.78 16 8 C 0.53 10.82 8.26 34.55 0.29 11.10 16 9 O -0.56 -12.34 17.07 -19.26 -0.33 -12.67 16 10 O -0.52 -8.72 12.60 -40.67 -0.51 -9.23 16 11 C -0.04 -0.87 9.48 -39.63 -0.38 -1.25 16 12 C -0.17 -4.05 8.58 -39.30 -0.34 -4.39 16 13 C 0.15 3.75 5.67 -104.58 -0.59 3.15 16 14 C -0.38 -9.35 7.85 -37.82 -0.30 -9.65 16 15 H 0.11 2.85 5.96 -52.48 -0.31 2.54 16 16 C 0.06 1.47 5.26 -17.26 -0.09 1.38 16 17 N -0.75 -17.47 11.05 55.58 0.61 -16.86 16 18 Si 0.93 17.39 29.57 -169.99 -5.03 12.36 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.25 -4.76 7.11 56.52 0.40 -4.36 16 22 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 23 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 27 H 0.11 2.28 6.57 -52.49 -0.34 1.93 16 28 H 0.40 4.46 9.11 45.56 0.42 4.88 16 29 H 0.10 2.10 7.52 -52.49 -0.39 1.70 16 30 H 0.12 2.91 6.48 -52.48 -0.34 2.57 16 31 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -28.46 276.78 -6.23 -34.70 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -2.21 Total: 8.95 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.01 Total: -10.11 kcal Atomic # 7 Polarization: -17.47 SS G_CDS: 0.61 Total: -16.86 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.77 Total: -33.21 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.46 -6.23 -34.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396126709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.359 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds