Wall clock time and date at job start Mon Mar 30 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46918 * 2 1 4 4 O 1.21321 * 120.00146 * 0.02562 * 3 2 1 5 5 C 1.46703 * 119.99990 * 180.02562 * 3 2 1 6 6 C 1.39318 * 120.56455 * 354.43881 * 5 3 2 7 7 C 1.39487 * 119.77297 * 179.75129 * 6 5 3 8 8 C 1.47599 * 119.51087 * 180.25459 * 7 6 5 9 9 O 1.21492 * 120.00415 * 0.27527 * 8 7 6 10 10 O 1.34764 * 119.99767 * 180.27077 * 8 7 6 11 11 C 1.40046 * 120.97165 * 0.53060 * 7 6 5 12 12 C 1.36224 * 121.19177 * 359.72438 * 11 7 6 13 13 C 1.40893 * 120.14495 * 0.02562 * 12 11 7 14 14 C 1.40597 * 120.47555 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99626 * 147.47931 * 14 13 12 16 16 C 1.40559 * 120.00316 * 327.47549 * 14 13 12 17 17 N 1.30460 * 120.00074 * 350.31252 * 16 14 13 18 18 Si 1.86796 * 120.00094 * 170.30896 * 16 14 13 19 19 H 1.48503 * 109.47403 * 90.00614 * 18 16 14 20 20 H 1.48506 * 109.47205 * 210.00129 * 18 16 14 21 21 H 1.48495 * 109.47435 * 330.00302 * 18 16 14 22 22 H 1.09000 * 109.46693 * 299.99595 * 1 2 3 23 23 H 1.09000 * 109.47100 * 59.99939 * 1 2 3 24 24 H 1.09005 * 109.46933 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47185 * 240.00569 * 2 1 3 26 26 H 1.09002 * 109.47506 * 119.99740 * 2 1 3 27 27 H 1.07997 * 120.11069 * 359.97438 * 6 5 3 28 28 H 0.96694 * 116.99660 * 180.02562 * 10 8 7 29 29 H 1.07997 * 119.39949 * 179.69836 * 11 7 6 30 30 H 1.08005 * 119.92540 * 179.97438 * 12 11 7 31 31 H 0.96998 * 120.00600 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2439 2.3429 0.0005 5 6 3.4746 1.6889 -0.0006 6 6 4.3894 0.6445 0.1151 7 6 5.7572 0.9178 0.1075 8 6 6.7213 -0.1936 0.2248 9 8 6.3217 -1.3368 0.3219 10 8 8.0449 0.0597 0.2240 11 6 6.2290 2.2316 -0.0040 12 6 5.3697 3.2829 -0.1141 13 6 3.9782 3.0621 -0.1168 14 6 3.0851 4.1420 -0.2295 15 1 2.1412 4.0114 -0.7381 16 6 3.4203 5.3916 0.3198 17 7 4.4647 5.5052 1.0933 18 14 2.3705 6.8898 -0.0577 19 1 1.2951 7.0099 0.9593 20 1 3.2184 8.1087 -0.0277 21 1 1.7635 6.7422 -1.4049 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0407 -0.3735 0.2068 28 1 8.6374 -0.7005 0.3027 29 1 7.2934 2.4146 -0.0023 30 1 5.7560 4.2880 -0.1985 31 1 4.6959 6.3674 1.4728 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396126709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:09 Heat of formation + Delta-G solvation = -145.642216 kcal Electronic energy + Delta-G solvation = -17494.695734 eV Core-core repulsion = 14511.429926 eV Total energy + Delta-G solvation = -2983.265808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01973 -40.20914 -38.36010 -36.83372 -35.89775 -33.68462 -32.09282 -31.60417 -28.32253 -25.85917 -24.53752 -23.30426 -21.77759 -20.31252 -19.48117 -18.68956 -17.92709 -17.25818 -16.36137 -16.34449 -16.09517 -16.03983 -15.57628 -14.75963 -14.57168 -14.25148 -14.03271 -13.66048 -13.24836 -13.00178 -12.91599 -12.71821 -12.55857 -12.40808 -12.31395 -11.95897 -11.94103 -11.80705 -11.38796 -11.26685 -10.09267 -9.64669 -9.44072 -8.95637 -6.66826 0.20756 0.37851 1.32622 1.34281 1.48009 1.79404 2.07664 2.10726 2.47098 2.64016 3.49293 3.54572 4.20289 4.30835 4.34803 4.38883 4.58386 4.70108 4.87304 4.94664 5.01453 5.02795 5.12892 5.18601 5.36597 5.48871 5.62990 5.69922 5.87733 5.88135 6.04250 6.41369 6.56813 6.70811 7.15234 7.26997 7.97212 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.008904 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.155533 B = 3143.737587 C = 4688.785058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.163 4.163 3 C 0.388 3.612 4 O -0.506 6.506 5 C -0.328 4.328 6 C 0.040 3.960 7 C -0.291 4.291 8 C 0.539 3.461 9 O -0.575 6.575 10 O -0.513 6.513 11 C -0.032 4.032 12 C -0.190 4.190 13 C 0.123 3.877 14 C -0.408 4.408 15 H 0.097 0.903 16 C 0.031 3.969 17 N -0.778 5.778 18 Si 0.990 3.010 19 H -0.264 1.264 20 H -0.251 1.251 21 H -0.257 1.257 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.423 0.577 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -3.377 -1.331 3.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.200 4.200 3 C 0.273 3.727 4 O -0.387 6.387 5 C -0.330 4.330 6 C 0.021 3.979 7 C -0.293 4.293 8 C 0.390 3.610 9 O -0.472 6.472 10 O -0.326 6.326 11 C -0.051 4.051 12 C -0.208 4.208 13 C 0.118 3.882 14 C -0.433 4.433 15 H 0.115 0.885 16 C -0.191 4.191 17 N -0.401 5.401 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.175 1.175 21 H -0.181 1.181 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.150 0.850 28 H 0.283 0.717 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.158 -2.702 -1.184 2.954 hybrid contribution 0.350 0.131 0.149 0.402 sum 0.508 -2.571 -1.035 2.817 Atomic orbital electron populations 1.21527 0.93416 1.02416 1.01722 1.21968 0.98333 0.94609 1.05137 1.22420 0.87660 0.91490 0.71154 1.90393 1.58931 1.48673 1.40738 1.21338 0.94510 0.93824 1.23324 1.21158 0.91056 0.97819 0.87849 1.18348 0.91712 0.91711 1.27554 1.20870 0.81458 0.87696 0.70947 1.90746 1.80497 1.24520 1.51396 1.84567 1.17561 1.44841 1.85600 1.20794 0.99277 0.91323 0.93711 1.20995 0.92807 0.98337 1.08707 1.19189 0.92950 0.91469 0.84551 1.20577 1.03621 0.93604 1.25518 0.88508 1.27166 0.96307 1.03230 0.92382 1.69632 1.22465 1.29094 1.18867 0.85074 0.78434 0.75402 0.80228 1.18897 1.17481 1.18085 0.93623 0.93381 0.89670 0.87619 0.87937 0.84979 0.71670 0.85809 0.86712 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.20 71.98 0.66 -3.15 16 2 C -0.16 -5.22 5.12 29.85 0.15 -5.06 16 3 C 0.39 16.94 7.08 27.90 0.20 17.14 16 4 O -0.51 -24.97 13.39 -3.16 -0.04 -25.02 16 5 C -0.33 -15.49 6.06 -18.59 -0.11 -15.60 16 6 C 0.04 1.71 8.99 22.83 0.21 1.92 16 7 C -0.29 -12.50 5.87 -20.07 -0.12 -12.61 16 8 C 0.54 20.69 8.26 70.29 0.58 21.27 16 9 O -0.58 -23.80 17.07 19.86 0.34 -23.46 16 10 O -0.51 -15.38 12.60 -56.75 -0.71 -16.10 16 11 C -0.03 -1.40 9.48 22.24 0.21 -1.19 16 12 C -0.19 -9.20 8.58 22.45 0.19 -9.01 16 13 C 0.12 6.33 5.67 -19.84 -0.11 6.22 16 14 C -0.41 -21.11 7.85 23.41 0.18 -20.93 16 15 H 0.10 5.18 5.96 -2.91 -0.02 5.16 16 16 C 0.03 1.44 5.26 85.46 0.45 1.89 16 17 N -0.78 -36.68 11.05 21.93 0.24 -36.44 16 18 Si 0.99 35.99 29.57 68.60 2.03 38.02 16 19 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.25 -8.22 7.11 99.48 0.71 -7.51 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 23 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 24 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.10 2.97 7.93 -2.39 -0.02 2.95 16 27 H 0.13 5.08 6.57 -2.91 -0.02 5.06 16 28 H 0.42 7.88 9.11 -74.06 -0.67 7.21 16 29 H 0.12 4.80 7.52 -2.91 -0.02 4.78 16 30 H 0.11 5.63 6.48 -2.91 -0.02 5.61 16 31 H 0.30 12.59 8.29 -92.71 -0.77 11.82 16 Total: -1.00 -61.90 276.78 4.85 -57.05 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.50 Total: 25.06 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 2.49 Total: -19.12 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.24 Total: -36.44 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -0.42 Total: -64.57 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -61.90 4.85 -57.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396126709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.596 kcal (2) G-P(sol) polarization free energy of solvation -61.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds