Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47315 * 2 1 4 4 O 1.21227 * 119.99349 * 0.02562 * 3 2 1 5 5 C 1.47388 * 120.00176 * 179.97438 * 3 2 1 6 6 C 1.40084 * 119.59661 * 0.02562 * 5 3 2 7 7 C 1.37859 * 121.11626 * 180.02562 * 6 5 3 8 8 C 1.39439 * 120.24591 * 359.97438 * 7 6 5 9 9 C 1.47437 * 120.39869 * 179.97438 * 8 7 6 10 10 O 1.21511 * 119.99929 * 174.31043 * 9 8 7 11 11 O 1.34796 * 119.99751 * 354.31720 * 9 8 7 12 12 C 1.46409 * 119.20033 * 359.97438 * 8 7 6 13 13 C 1.40844 * 120.52686 * 180.02562 * 12 8 7 14 14 H 1.07996 * 119.99906 * 327.27924 * 13 12 8 15 15 C 1.40347 * 119.99975 * 147.55821 * 13 12 8 16 16 N 1.30586 * 119.99794 * 350.57421 * 15 13 12 17 17 Si 1.86797 * 120.00098 * 170.56939 * 15 13 12 18 18 H 1.48505 * 109.47037 * 90.00020 * 17 15 13 19 19 H 1.48494 * 109.47334 * 210.00117 * 17 15 13 20 20 H 1.48499 * 109.47265 * 330.00374 * 17 15 13 21 21 C 1.39017 * 119.59474 * 180.27784 * 5 3 2 22 22 H 1.08997 * 109.47310 * 299.99896 * 1 2 3 23 23 H 1.08999 * 109.46873 * 60.00058 * 1 2 3 24 24 H 1.08996 * 109.46866 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47310 * 240.00104 * 2 1 3 26 26 H 1.09004 * 109.47295 * 119.99923 * 2 1 3 27 27 H 1.08004 * 119.44711 * 0.02562 * 6 5 3 28 28 H 1.07997 * 119.87967 * 179.97438 * 7 6 5 29 29 H 0.96706 * 116.99460 * 180.02562 * 11 9 8 30 30 H 0.97008 * 119.99818 * 180.02562 * 16 15 13 31 31 H 1.08001 * 120.15941 * 0.02562 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2446 2.3422 0.0005 5 6 3.4815 1.6901 0.0006 6 6 4.3843 0.6190 0.0006 7 6 5.7458 0.8349 0.0016 8 6 6.2509 2.1346 0.0022 9 6 7.7065 2.3693 0.0039 10 8 8.1397 3.4998 -0.1000 11 8 8.5566 1.3298 0.1205 12 6 5.3184 3.2633 0.0011 13 6 5.7981 4.5875 0.0010 14 1 6.7214 4.8274 0.5073 15 6 5.0731 5.5964 -0.6519 16 7 4.0580 5.2837 -1.4115 17 14 5.5602 7.3866 -0.4342 18 1 6.5456 7.7621 -1.4799 19 1 4.3555 8.2460 -0.5578 20 1 6.1670 7.5748 0.9080 21 6 3.9356 3.0040 0.0064 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0073 -0.3931 -0.0003 28 1 6.4239 -0.0057 0.0020 29 1 9.5020 1.5334 0.1170 30 1 3.5572 5.9810 -1.8631 31 1 3.2302 3.8219 0.0110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396127063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -123.910267 kcal Electronic energy + Delta-G solvation = -17485.566895 eV Core-core repulsion = 14503.243455 eV Total energy + Delta-G solvation = -2982.323440 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23391 -38.77870 -36.68376 -34.99403 -33.99346 -32.49422 -30.35432 -29.84915 -25.88330 -25.30779 -22.74090 -21.04079 -20.57019 -18.88663 -17.44785 -16.96969 -15.91661 -15.71828 -15.12983 -14.94567 -14.56761 -14.44106 -13.62687 -13.06321 -12.90216 -12.73137 -12.51178 -11.99320 -11.85311 -11.47297 -11.33906 -11.24701 -11.13510 -10.87431 -10.74624 -10.56463 -10.43771 -9.86163 -9.51486 -9.21273 -8.80198 -7.84195 -7.61877 -7.10057 -4.66397 1.48500 2.67015 2.83051 2.97434 3.03779 3.17815 3.76834 3.93416 4.16377 4.43953 4.70014 5.30341 5.32543 5.43186 5.64408 5.96036 6.01416 6.18129 6.20104 6.21316 6.38472 6.59540 6.74040 6.81357 6.91840 7.11022 7.38362 7.47429 7.62289 7.70205 7.86012 8.30188 8.33765 8.45296 8.55129 9.09567 9.81977 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.008995 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.347461 B = 3112.010760 C = 4660.632794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.168 4.168 3 C 0.393 3.607 4 O -0.467 6.467 5 C -0.140 4.140 6 C -0.228 4.228 7 C -0.034 4.034 8 C -0.254 4.254 9 C 0.517 3.483 10 O -0.529 6.529 11 O -0.534 6.534 12 C 0.130 3.870 13 C -0.391 4.391 14 H 0.110 0.890 15 C 0.063 3.937 16 N -0.765 5.765 17 Si 0.926 3.074 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.256 1.256 21 C -0.078 4.078 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.392 0.608 30 H 0.292 0.708 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -6.089 1.577 6.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.205 4.205 3 C 0.273 3.727 4 O -0.344 6.344 5 C -0.142 4.142 6 C -0.248 4.248 7 C -0.052 4.052 8 C -0.258 4.258 9 C 0.367 3.633 10 O -0.421 6.421 11 O -0.346 6.346 12 C 0.126 3.874 13 C -0.417 4.417 14 H 0.128 0.872 15 C -0.159 4.159 16 N -0.388 5.388 17 Si 0.749 3.251 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.179 1.179 21 C -0.097 4.097 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.248 0.752 30 H 0.103 0.897 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.762 -5.286 1.387 5.742 hybrid contribution 0.922 0.691 -0.134 1.160 sum -0.839 -4.595 1.253 4.836 Atomic orbital electron populations 1.21583 0.94581 1.00947 1.02799 1.21951 0.97216 0.97130 1.04237 1.22712 0.89067 0.90242 0.70708 1.90442 1.58725 1.47960 1.37265 1.20117 0.93024 0.94983 1.06027 1.20316 0.92572 0.96409 1.15469 1.20716 0.94590 0.94987 0.94900 1.19715 0.87081 0.93937 1.25028 1.21050 0.87664 0.81405 0.73135 1.90763 1.78968 1.23894 1.48447 1.84648 1.21224 1.41599 1.87111 1.18429 0.90008 0.91643 0.87317 1.20353 1.06563 0.91086 1.23746 0.87187 1.26333 0.93241 1.03041 0.93329 1.69660 1.13693 1.37207 1.18266 0.85990 0.79086 0.79346 0.80673 1.18860 1.19772 1.17910 1.21788 0.95538 0.94693 0.97705 0.92425 0.92384 0.92699 0.88794 0.88798 0.87969 0.87479 0.75227 0.89676 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 37.16 0.34 -1.54 16 2 C -0.17 -2.44 4.99 -27.88 -0.14 -2.58 16 3 C 0.39 7.82 7.12 -30.58 -0.22 7.60 16 4 O -0.47 -10.57 15.91 5.60 0.09 -10.49 16 5 C -0.14 -3.10 5.85 -105.19 -0.62 -3.72 16 6 C -0.23 -4.59 9.41 -39.03 -0.37 -4.96 16 7 C -0.03 -0.71 9.59 -39.27 -0.38 -1.09 16 8 C -0.25 -6.13 6.07 -102.42 -0.62 -6.75 16 9 C 0.52 11.81 8.24 34.48 0.28 12.10 16 10 O -0.53 -13.31 14.54 -19.27 -0.28 -13.59 16 11 O -0.53 -9.64 12.71 -40.75 -0.52 -10.15 16 12 C 0.13 3.40 5.66 -104.70 -0.59 2.80 16 13 C -0.39 -10.28 7.84 -37.80 -0.30 -10.58 16 14 H 0.11 2.94 5.96 -52.49 -0.31 2.63 16 15 C 0.06 1.54 5.26 -17.29 -0.09 1.45 16 16 N -0.77 -19.21 11.06 55.57 0.61 -18.59 16 17 Si 0.93 18.63 29.57 -169.99 -5.03 13.61 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 21 C -0.08 -1.97 8.17 -38.37 -0.31 -2.29 16 22 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 23 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 26 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 27 H 0.10 1.69 6.92 -52.48 -0.36 1.33 16 28 H 0.11 2.00 7.62 -52.49 -0.40 1.60 16 29 H 0.39 5.05 9.11 45.56 0.42 5.47 16 30 H 0.29 6.63 8.29 -40.82 -0.34 6.29 16 31 H 0.13 3.59 6.05 -52.49 -0.32 3.28 16 LS Contribution 276.95 15.07 4.17 4.17 Total: -1.00 -29.77 276.95 -6.17 -35.94 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.21 Total: 8.65 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.01 Total: -9.55 kcal Atomic # 7 Polarization: -19.21 SS G_CDS: 0.61 Total: -18.59 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.71 Total: -34.23 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.77 -6.17 -35.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396127063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.970 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds