Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47315 * 2 1 4 4 O 1.21227 * 119.99349 * 0.02562 * 3 2 1 5 5 C 1.47388 * 120.00176 * 179.97438 * 3 2 1 6 6 C 1.40084 * 119.59661 * 0.02562 * 5 3 2 7 7 C 1.37859 * 121.11626 * 180.02562 * 6 5 3 8 8 C 1.39439 * 120.24591 * 359.97438 * 7 6 5 9 9 C 1.47437 * 120.39869 * 179.97438 * 8 7 6 10 10 O 1.21511 * 119.99929 * 174.31043 * 9 8 7 11 11 O 1.34796 * 119.99751 * 354.31720 * 9 8 7 12 12 C 1.46409 * 119.20033 * 359.97438 * 8 7 6 13 13 C 1.40844 * 120.52686 * 180.02562 * 12 8 7 14 14 H 1.07996 * 119.99906 * 327.27924 * 13 12 8 15 15 C 1.40347 * 119.99975 * 147.55821 * 13 12 8 16 16 N 1.30586 * 119.99794 * 350.57421 * 15 13 12 17 17 Si 1.86797 * 120.00098 * 170.56939 * 15 13 12 18 18 H 1.48505 * 109.47037 * 90.00020 * 17 15 13 19 19 H 1.48494 * 109.47334 * 210.00117 * 17 15 13 20 20 H 1.48499 * 109.47265 * 330.00374 * 17 15 13 21 21 C 1.39017 * 119.59474 * 180.27784 * 5 3 2 22 22 H 1.08997 * 109.47310 * 299.99896 * 1 2 3 23 23 H 1.08999 * 109.46873 * 60.00058 * 1 2 3 24 24 H 1.08996 * 109.46866 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47310 * 240.00104 * 2 1 3 26 26 H 1.09004 * 109.47295 * 119.99923 * 2 1 3 27 27 H 1.08004 * 119.44711 * 0.02562 * 6 5 3 28 28 H 1.07997 * 119.87967 * 179.97438 * 7 6 5 29 29 H 0.96706 * 116.99460 * 180.02562 * 11 9 8 30 30 H 0.97008 * 119.99818 * 180.02562 * 16 15 13 31 31 H 1.08001 * 120.15941 * 0.02562 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2446 2.3422 0.0005 5 6 3.4815 1.6901 0.0006 6 6 4.3843 0.6190 0.0006 7 6 5.7458 0.8349 0.0016 8 6 6.2509 2.1346 0.0022 9 6 7.7065 2.3693 0.0039 10 8 8.1397 3.4998 -0.1000 11 8 8.5566 1.3298 0.1205 12 6 5.3184 3.2633 0.0011 13 6 5.7981 4.5875 0.0010 14 1 6.7214 4.8274 0.5073 15 6 5.0731 5.5964 -0.6519 16 7 4.0580 5.2837 -1.4115 17 14 5.5602 7.3866 -0.4342 18 1 6.5456 7.7621 -1.4799 19 1 4.3555 8.2460 -0.5578 20 1 6.1670 7.5748 0.9080 21 6 3.9356 3.0040 0.0064 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0073 -0.3931 -0.0003 28 1 6.4239 -0.0057 0.0020 29 1 9.5020 1.5334 0.1170 30 1 3.5572 5.9810 -1.8631 31 1 3.2302 3.8219 0.0110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396127063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -142.827033 kcal Electronic energy + Delta-G solvation = -17486.387188 eV Core-core repulsion = 14503.243455 eV Total energy + Delta-G solvation = -2983.143732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94214 -40.44361 -38.41593 -36.69860 -35.76459 -33.77072 -32.06106 -31.62842 -27.67962 -26.82532 -24.27790 -22.78305 -22.17643 -20.51907 -19.18227 -18.67409 -17.66754 -17.39243 -16.74737 -16.29517 -16.19068 -16.13069 -15.34249 -14.73072 -14.61348 -14.18351 -14.12910 -13.59009 -13.17697 -13.06602 -12.92183 -12.85231 -12.58475 -12.53395 -12.22742 -12.09728 -11.95531 -11.59413 -11.28757 -10.97961 -10.43833 -9.63055 -9.42921 -8.87787 -6.55644 -0.27203 0.93117 1.20146 1.29994 1.45097 1.51496 2.10848 2.18385 2.54784 2.65348 3.26371 3.50847 4.11318 4.30999 4.35072 4.46082 4.59773 4.80991 4.95037 4.97914 5.02664 5.09705 5.12113 5.12370 5.32731 5.38276 5.69260 5.78638 5.86569 5.95521 6.11902 6.45528 6.61215 6.70297 6.76530 7.43116 8.07006 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.008995 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.347461 B = 3112.010760 C = 4660.632794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.157 4.157 3 C 0.389 3.611 4 O -0.504 6.504 5 C -0.143 4.143 6 C -0.204 4.204 7 C -0.034 4.034 8 C -0.272 4.272 9 C 0.521 3.479 10 O -0.559 6.559 11 O -0.515 6.515 12 C 0.106 3.894 13 C -0.437 4.437 14 H 0.093 0.907 15 C 0.026 3.974 16 N -0.803 5.803 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.258 1.258 20 H -0.257 1.257 21 C -0.120 4.120 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.155 0.845 28 H 0.143 0.857 29 H 0.418 0.582 30 H 0.296 0.704 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 -9.178 1.739 9.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.194 4.194 3 C 0.271 3.729 4 O -0.382 6.382 5 C -0.144 4.144 6 C -0.223 4.223 7 C -0.052 4.052 8 C -0.275 4.275 9 C 0.372 3.628 10 O -0.453 6.453 11 O -0.328 6.328 12 C 0.102 3.898 13 C -0.464 4.464 14 H 0.111 0.889 15 C -0.192 4.192 16 N -0.427 5.427 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.182 1.182 20 H -0.180 1.180 21 C -0.139 4.139 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.110 0.890 25 H 0.138 0.862 26 H 0.142 0.858 27 H 0.173 0.827 28 H 0.160 0.840 29 H 0.278 0.722 30 H 0.108 0.892 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.621 -8.417 1.554 8.712 hybrid contribution 0.945 1.345 -0.154 1.651 sum -0.676 -7.072 1.400 7.241 Atomic orbital electron populations 1.21604 0.93736 1.02909 1.01578 1.22011 0.97935 0.92771 1.06710 1.23425 0.87688 0.92696 0.69139 1.90438 1.59159 1.49932 1.38716 1.20652 0.95385 0.94408 1.03996 1.20875 0.91807 0.98024 1.11591 1.21138 0.95799 0.94584 0.93693 1.20141 0.87984 0.94905 1.24440 1.20932 0.87944 0.81590 0.72357 1.90759 1.79551 1.25420 1.49582 1.84543 1.22923 1.39243 1.86096 1.18772 0.90936 0.92528 0.87587 1.20331 1.07027 0.92473 1.26560 0.88879 1.27076 0.92996 1.06602 0.92502 1.69710 1.15017 1.38374 1.19604 0.85102 0.79138 0.74696 0.80305 1.18603 1.18177 1.18026 1.21591 0.94980 0.95673 1.01689 0.93590 0.93876 0.89017 0.86157 0.85767 0.82743 0.83953 0.72200 0.89240 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.20 71.98 0.66 -2.61 16 2 C -0.16 -3.89 4.99 29.85 0.15 -3.74 16 3 C 0.39 14.94 7.12 28.10 0.20 15.14 16 4 O -0.50 -23.18 15.91 -2.87 -0.05 -23.23 16 5 C -0.14 -6.21 5.85 -20.23 -0.12 -6.33 16 6 C -0.20 -7.42 9.41 22.63 0.21 -7.20 16 7 C -0.03 -1.33 9.59 22.47 0.22 -1.12 16 8 C -0.27 -13.00 6.07 -18.44 -0.11 -13.11 16 9 C 0.52 23.48 8.24 70.25 0.58 24.05 16 10 O -0.56 -28.62 14.54 19.80 0.29 -28.33 16 11 O -0.51 -17.07 12.71 -57.07 -0.73 -17.80 16 12 C 0.11 5.73 5.66 -19.91 -0.11 5.62 16 13 C -0.44 -24.38 7.84 23.42 0.18 -24.19 16 14 H 0.09 5.32 5.96 -2.91 -0.02 5.31 16 15 C 0.03 1.36 5.26 85.39 0.45 1.81 16 16 N -0.80 -42.85 11.06 21.89 0.24 -42.61 16 17 Si 0.99 40.09 29.57 68.60 2.03 42.11 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 C -0.12 -6.31 8.17 23.06 0.19 -6.12 16 22 H 0.04 1.16 8.10 -2.39 -0.02 1.15 16 23 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.12 2.44 8.06 -2.39 -0.02 2.42 16 26 H 0.12 2.41 8.06 -2.38 -0.02 2.39 16 27 H 0.16 4.02 6.92 -2.91 -0.02 4.00 16 28 H 0.14 4.57 7.62 -2.91 -0.02 4.54 16 29 H 0.42 9.46 9.11 -74.05 -0.67 8.79 16 30 H 0.30 14.30 8.29 -92.70 -0.77 13.54 16 31 H 0.11 6.05 6.05 -2.91 -0.02 6.03 16 Total: -1.00 -69.92 276.95 4.79 -65.13 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.50 Total: 22.53 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 2.50 Total: -17.81 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.24 Total: -42.61 kcal Atomic # 8 Polarization: -68.88 SS G_CDS: -0.48 Total: -69.36 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Total: -69.92 4.79 -65.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396127063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.693 kcal (2) G-P(sol) polarization free energy of solvation -69.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds