Wall clock time and date at job start Mon Mar 30 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35914 * 116.99753 * 2 1 4 4 C 1.38683 * 119.51917 * 359.97438 * 3 2 1 5 5 C 1.39533 * 121.39703 * 179.97438 * 4 3 2 6 6 S 1.76075 * 130.56699 * 180.02562 * 5 4 3 7 7 C 1.75515 * 91.51453 * 179.82542 * 6 5 4 8 8 C 1.32722 * 110.67978 * 0.33310 * 7 6 5 9 9 C 1.50692 * 122.09275 * 179.86493 * 8 7 6 10 10 C 1.39792 * 120.11944 * 0.03038 * 5 4 3 11 11 C 1.47881 * 118.15000 * 0.02562 * 10 5 4 12 12 C 1.40580 * 120.36436 * 179.97438 * 11 10 5 13 13 H 1.07998 * 119.99975 * 327.02198 * 12 11 10 14 14 C 1.39970 * 119.99859 * 147.01342 * 12 11 10 15 15 N 1.30847 * 120.00161 * 350.23613 * 14 12 11 16 16 Si 1.86803 * 119.99828 * 170.23789 * 14 12 11 17 17 H 1.48493 * 109.46993 * 59.99763 * 16 14 12 18 18 H 1.48494 * 109.46879 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46508 * 299.99906 * 16 14 12 20 20 C 1.38054 * 119.51278 * 180.02562 * 3 2 1 21 21 H 1.09000 * 109.46794 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46976 * 300.00018 * 1 2 3 23 23 H 1.09004 * 109.46650 * 60.00180 * 1 2 3 24 24 H 1.07999 * 119.30087 * 0.02562 * 4 3 2 25 25 H 1.07997 * 124.65692 * 180.22451 * 7 6 5 26 26 H 1.08998 * 109.47356 * 263.53505 * 9 8 7 27 27 H 1.09006 * 109.47439 * 143.53885 * 9 8 7 28 28 H 1.08994 * 109.47274 * 23.53765 * 9 8 7 29 29 H 0.96998 * 120.00479 * 180.02562 * 15 14 12 30 30 H 1.07995 * 119.95686 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2810 2.3677 -0.0005 5 6 1.8733 3.6311 0.0000 6 16 1.1484 5.2357 0.0001 7 6 2.7282 6.0003 0.0062 8 6 3.6910 5.0869 0.0006 9 6 5.1505 5.4620 0.0010 10 6 3.2659 3.7529 0.0004 11 6 4.0746 2.5148 -0.0003 12 6 5.4787 2.5831 -0.0004 13 1 5.9799 3.3932 -0.5092 14 6 6.2272 1.6012 0.6590 15 7 5.6288 0.7318 1.4323 16 14 8.0805 1.5321 0.4350 17 1 8.6823 2.8100 0.8930 18 1 8.6340 0.4093 1.2337 19 1 8.3979 1.3218 -1.0003 20 6 3.4253 1.2716 -0.0005 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 0.2039 2.2889 -0.0005 25 1 2.8939 7.0675 0.0118 26 1 5.5302 5.4456 -1.0205 27 1 5.7089 4.7490 0.6076 28 1 5.2683 6.4629 0.4163 29 1 6.1475 0.0515 1.8896 30 1 4.0051 0.3605 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396190393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:12 Heat of formation + Delta-G solvation = -8.410692 kcal Electronic energy + Delta-G solvation = -15605.696876 eV Core-core repulsion = 13071.134744 eV Total energy + Delta-G solvation = -2534.562131 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.93180 -37.37783 -34.54012 -33.28075 -30.12508 -28.51319 -27.41232 -26.01825 -25.11173 -21.70403 -20.98725 -18.46385 -18.15644 -16.32714 -15.93637 -15.19007 -14.90826 -14.78574 -14.27244 -13.39415 -13.13655 -13.03342 -12.35445 -11.98108 -11.86331 -11.70761 -11.56685 -11.30396 -11.16215 -10.93577 -10.83339 -10.55902 -10.15276 -9.97784 -9.50574 -9.40808 -9.02942 -8.10111 -7.06599 -6.89748 -6.60857 -4.57761 1.96919 2.62370 2.66077 2.95974 2.97800 3.04638 3.08297 3.56382 3.75452 4.20678 4.43032 5.34779 5.63030 5.69244 5.86710 5.86874 5.98135 6.22136 6.34247 6.41832 6.51288 6.56342 6.79554 6.87495 6.99523 7.17916 7.28710 7.45453 7.70523 7.74362 7.84133 8.16561 8.53297 8.57307 8.70951 9.94184 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.010611 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.322982 B = 2638.055585 C = 4124.691624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.173 3.827 4 C -0.306 4.306 5 C -0.041 4.041 6 S -0.009 6.009 7 C -0.287 4.287 8 C -0.019 4.019 9 C -0.104 4.104 10 C -0.199 4.199 11 C 0.182 3.818 12 C -0.438 4.438 13 H 0.097 0.903 14 C 0.071 3.929 15 N -0.771 5.771 16 Si 0.915 3.085 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.214 4.214 21 H 0.085 0.915 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.144 0.856 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.288 0.712 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 1.841 -1.415 3.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.238 6.238 3 C 0.126 3.874 4 C -0.333 4.333 5 C -0.156 4.156 6 S 0.253 5.747 7 C -0.420 4.420 8 C -0.030 4.030 9 C -0.162 4.162 10 C -0.206 4.206 11 C 0.176 3.824 12 C -0.466 4.466 13 H 0.115 0.885 14 C -0.150 4.150 15 N -0.394 5.394 16 Si 0.739 3.261 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.236 4.236 21 H 0.103 0.897 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.118 0.882 25 H 0.161 0.839 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.234 2.096 -1.242 4.049 hybrid contribution 1.698 -0.392 0.083 1.745 sum -1.535 1.704 -1.159 2.570 Atomic orbital electron populations 1.22813 0.80493 1.02098 1.00781 1.86047 1.19796 1.28663 1.89338 1.18642 0.92198 0.82109 0.94456 1.19520 0.97273 0.89946 1.26519 1.21898 0.95768 0.95018 1.02928 1.83365 1.10364 0.98659 1.82305 1.24240 0.93941 1.01230 1.22566 1.18486 0.95834 0.91742 0.96910 1.20856 0.92618 1.00746 1.02027 1.19095 0.91319 0.93067 1.17071 1.18112 0.92118 0.87609 0.84534 1.19741 0.91086 1.08107 1.27619 0.88514 1.26080 1.01971 0.93757 0.93233 1.69820 1.38978 1.12093 1.18503 0.86228 0.80861 0.79174 0.79881 1.18540 1.20008 1.18432 1.20248 0.89222 0.98669 1.15492 0.89651 0.93446 0.93482 0.88224 0.83852 0.91930 0.89022 0.93488 0.90127 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.79 101.05 0.99 1.54 16 2 O -0.32 -7.06 10.48 -19.47 -0.20 -7.26 16 3 C 0.17 4.20 6.65 -39.48 -0.26 3.93 16 4 C -0.31 -7.17 9.03 -38.93 -0.35 -7.52 16 5 C -0.04 -0.99 6.48 -38.52 -0.25 -1.24 16 6 S -0.01 -0.18 23.30 -107.50 -2.50 -2.68 16 7 C -0.29 -5.86 10.81 28.85 0.31 -5.54 16 8 C -0.02 -0.41 5.81 -105.85 -0.62 -1.03 16 9 C -0.10 -1.97 8.54 36.00 0.31 -1.66 16 10 C -0.20 -4.97 6.02 -104.71 -0.63 -5.60 16 11 C 0.18 4.71 5.68 -104.31 -0.59 4.11 16 12 C -0.44 -10.67 7.24 -38.05 -0.28 -10.94 16 13 H 0.10 2.19 5.49 -52.49 -0.29 1.90 16 14 C 0.07 1.65 5.24 -17.32 -0.09 1.56 16 15 N -0.77 -18.87 11.08 55.55 0.62 -18.25 16 16 Si 0.92 17.22 29.57 -169.99 -5.03 12.19 16 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 18 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 20 C -0.21 -5.58 8.51 -38.89 -0.33 -5.91 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 23 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 24 H 0.10 2.09 6.15 -52.49 -0.32 1.77 16 25 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 26 H 0.06 1.11 7.98 -51.93 -0.41 0.69 16 27 H 0.09 1.85 5.73 -51.93 -0.30 1.56 16 28 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 30 H 0.13 3.43 6.50 -52.49 -0.34 3.09 16 LS Contribution 265.21 15.07 4.00 4.00 Total: -1.00 -27.26 265.21 -7.77 -35.03 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.85 Total: 5.27 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -1.79 Total: -28.29 kcal Atomic # 7 Polarization: -18.87 SS G_CDS: 0.62 Total: -18.25 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.20 Total: -7.26 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.50 Total: -2.68 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.26 -7.77 -35.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.618 kcal (2) G-P(sol) polarization free energy of solvation -27.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds