Wall clock time and date at job start Mon Mar 30 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35914 * 116.99753 * 2 1 4 4 C 1.38683 * 119.51917 * 359.97438 * 3 2 1 5 5 C 1.39533 * 121.39703 * 179.97438 * 4 3 2 6 6 S 1.76075 * 130.56699 * 180.02562 * 5 4 3 7 7 C 1.75515 * 91.51453 * 179.82542 * 6 5 4 8 8 C 1.32722 * 110.67978 * 0.33310 * 7 6 5 9 9 C 1.50692 * 122.09275 * 179.86493 * 8 7 6 10 10 C 1.39792 * 120.11944 * 0.03038 * 5 4 3 11 11 C 1.47881 * 118.15000 * 0.02562 * 10 5 4 12 12 C 1.40580 * 120.36436 * 179.97438 * 11 10 5 13 13 H 1.07998 * 119.99975 * 327.02198 * 12 11 10 14 14 C 1.39970 * 119.99859 * 147.01342 * 12 11 10 15 15 N 1.30847 * 120.00161 * 350.23613 * 14 12 11 16 16 Si 1.86803 * 119.99828 * 170.23789 * 14 12 11 17 17 H 1.48493 * 109.46993 * 59.99763 * 16 14 12 18 18 H 1.48494 * 109.46879 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46508 * 299.99906 * 16 14 12 20 20 C 1.38054 * 119.51278 * 180.02562 * 3 2 1 21 21 H 1.09000 * 109.46794 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46976 * 300.00018 * 1 2 3 23 23 H 1.09004 * 109.46650 * 60.00180 * 1 2 3 24 24 H 1.07999 * 119.30087 * 0.02562 * 4 3 2 25 25 H 1.07997 * 124.65692 * 180.22451 * 7 6 5 26 26 H 1.08998 * 109.47356 * 263.53505 * 9 8 7 27 27 H 1.09006 * 109.47439 * 143.53885 * 9 8 7 28 28 H 1.08994 * 109.47274 * 23.53765 * 9 8 7 29 29 H 0.96998 * 120.00479 * 180.02562 * 15 14 12 30 30 H 1.07995 * 119.95686 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2810 2.3677 -0.0005 5 6 1.8733 3.6311 0.0000 6 16 1.1484 5.2357 0.0001 7 6 2.7282 6.0003 0.0062 8 6 3.6910 5.0869 0.0006 9 6 5.1505 5.4620 0.0010 10 6 3.2659 3.7529 0.0004 11 6 4.0746 2.5148 -0.0003 12 6 5.4787 2.5831 -0.0004 13 1 5.9799 3.3932 -0.5092 14 6 6.2272 1.6012 0.6590 15 7 5.6288 0.7318 1.4323 16 14 8.0805 1.5321 0.4350 17 1 8.6823 2.8100 0.8930 18 1 8.6340 0.4093 1.2337 19 1 8.3979 1.3218 -1.0003 20 6 3.4253 1.2716 -0.0005 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 0.2039 2.2889 -0.0005 25 1 2.8939 7.0675 0.0118 26 1 5.5302 5.4456 -1.0205 27 1 5.7089 4.7490 0.6076 28 1 5.2683 6.4629 0.4163 29 1 6.1475 0.0515 1.8896 30 1 4.0051 0.3605 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396190393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:12 Heat of formation + Delta-G solvation = -22.822624 kcal Electronic energy + Delta-G solvation = -15606.321824 eV Core-core repulsion = 13071.134744 eV Total energy + Delta-G solvation = -2535.187079 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.64823 -39.05399 -36.28406 -34.99878 -31.91538 -30.18590 -28.99136 -27.53890 -26.86373 -23.46522 -22.74763 -20.15584 -19.89691 -18.09349 -17.56806 -16.84754 -16.48283 -16.41951 -16.01859 -14.94600 -14.74851 -14.68624 -14.02127 -13.57208 -13.49444 -13.28913 -13.19425 -12.85208 -12.75141 -12.58487 -12.36056 -12.07040 -11.78221 -11.69971 -11.20823 -11.13447 -10.72257 -9.88266 -8.82488 -8.65160 -8.33394 -6.41756 0.22759 0.82259 0.94820 1.39179 1.41516 1.52588 1.54107 1.81042 2.17754 2.61118 2.70970 3.50898 4.26383 4.30548 4.39352 4.41402 4.58319 4.67798 4.73431 4.80382 4.87270 4.97234 5.11531 5.15292 5.33072 5.42133 5.53254 5.70923 5.90980 5.95599 6.04858 6.37675 6.73041 6.77034 6.91083 8.22774 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.010611 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.322982 B = 2638.055585 C = 4124.691624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.343 6.343 3 C 0.168 3.832 4 C -0.315 4.315 5 C -0.075 4.075 6 S 0.037 5.963 7 C -0.273 4.273 8 C -0.048 4.048 9 C -0.098 4.098 10 C -0.222 4.222 11 C 0.154 3.846 12 C -0.457 4.457 13 H 0.108 0.892 14 C 0.031 3.969 15 N -0.808 5.808 16 Si 0.987 3.013 17 H -0.249 1.249 18 H -0.271 1.271 19 H -0.256 1.256 20 C -0.249 4.249 21 H 0.122 0.878 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.121 0.879 25 H 0.180 0.820 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.293 0.707 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 3.479 -1.617 4.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.257 6.257 3 C 0.121 3.879 4 C -0.341 4.341 5 C -0.190 4.190 6 S 0.299 5.701 7 C -0.406 4.406 8 C -0.059 4.059 9 C -0.157 4.157 10 C -0.228 4.228 11 C 0.149 3.851 12 C -0.484 4.484 13 H 0.126 0.874 14 C -0.187 4.187 15 N -0.432 5.432 16 Si 0.806 3.194 17 H -0.173 1.173 18 H -0.195 1.195 19 H -0.180 1.180 20 C -0.271 4.271 21 H 0.140 0.860 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.139 0.861 25 H 0.197 0.803 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.202 3.737 -1.446 5.129 hybrid contribution 1.507 -0.847 0.152 1.735 sum -1.695 2.889 -1.294 3.591 Atomic orbital electron populations 1.23185 0.77514 1.04810 1.01449 1.86012 1.22888 1.27755 1.89058 1.18725 0.92035 0.83335 0.93838 1.19732 0.98246 0.89666 1.26450 1.22367 0.96377 0.97070 1.03161 1.83125 1.09823 0.95812 1.81335 1.24768 0.93432 1.02788 1.19565 1.18777 0.97917 0.90872 0.98312 1.20814 0.90513 1.01810 1.02517 1.19507 0.91957 0.94110 1.17265 1.18492 0.93288 0.88184 0.85158 1.20054 0.90990 1.09201 1.28161 0.87394 1.27010 1.06676 0.92755 0.92218 1.69908 1.41011 1.12863 1.19400 0.85160 0.74697 0.79646 0.79880 1.17268 1.19494 1.18005 1.20207 0.90246 0.98236 1.18428 0.86024 0.92934 0.92516 0.86124 0.80262 0.90989 0.90807 0.90461 0.89607 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.79 113.37 1.11 1.89 16 2 O -0.34 -15.19 10.48 -92.58 -0.97 -16.16 16 3 C 0.17 8.43 6.65 22.33 0.15 8.58 16 4 C -0.31 -14.85 9.03 22.69 0.20 -14.64 16 5 C -0.07 -3.57 6.48 22.96 0.15 -3.42 16 6 S 0.04 1.44 23.30 -56.49 -1.32 0.12 16 7 C -0.27 -10.31 10.81 66.65 0.72 -9.59 16 8 C -0.05 -2.05 5.81 -20.61 -0.12 -2.17 16 9 C -0.10 -3.54 8.54 71.23 0.61 -2.93 16 10 C -0.22 -11.15 6.02 -19.92 -0.12 -11.27 16 11 C 0.15 8.28 5.68 -19.66 -0.11 8.17 16 12 C -0.46 -22.84 7.24 23.26 0.17 -22.67 16 13 H 0.11 4.95 5.49 -2.91 -0.02 4.93 16 14 C 0.03 1.48 5.24 85.26 0.45 1.93 16 15 N -0.81 -41.10 11.08 21.83 0.24 -40.85 16 16 Si 0.99 35.26 29.57 68.60 2.03 37.29 16 17 H -0.25 -8.36 7.11 99.48 0.71 -7.66 16 18 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 19 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 20 C -0.25 -13.65 8.51 22.72 0.19 -13.46 16 21 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 22 H 0.05 1.58 7.62 -2.39 -0.02 1.56 16 23 H 0.06 1.65 7.62 -2.38 -0.02 1.63 16 24 H 0.12 4.97 6.15 -2.91 -0.02 4.95 16 25 H 0.18 5.40 8.06 -2.91 -0.02 5.38 16 26 H 0.07 2.42 7.98 -2.39 -0.02 2.40 16 27 H 0.07 2.94 5.73 -2.38 -0.01 2.92 16 28 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 29 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 30 H 0.11 6.12 6.50 -2.91 -0.02 6.10 16 Total: -1.00 -60.57 265.21 4.55 -56.02 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 1.17 Total: 23.18 kcal Atomic # 6 Polarization: -63.00 SS G_CDS: 3.40 Total: -59.60 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.24 Total: -40.85 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.97 Total: -16.16 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.32 Total: 0.12 kcal Total: -60.57 4.55 -56.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.201 kcal (2) G-P(sol) polarization free energy of solvation -60.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds