Wall clock time and date at job start Mon Mar 30 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35837 * 117.00153 * 2 1 4 4 C 1.35719 * 119.61777 * 0.02562 * 3 2 1 5 5 C 1.41117 * 120.33699 * 180.02562 * 4 3 2 6 6 C 1.40998 * 120.17207 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99486 * 205.74189 * 6 5 4 8 8 C 1.39828 * 120.00263 * 25.73604 * 6 5 4 9 9 N 1.30910 * 120.00082 * 15.51871 * 8 6 5 10 10 Si 1.86795 * 120.00069 * 195.52181 * 8 6 5 11 11 H 1.48501 * 109.47487 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47371 * 120.00255 * 10 8 6 13 13 H 1.48509 * 109.47139 * 239.99711 * 10 8 6 14 14 C 1.40453 * 119.64929 * 0.17856 * 5 4 3 15 15 C 1.50698 * 119.96213 * 179.76719 * 14 5 4 16 16 C 1.38901 * 120.07537 * 359.59146 * 14 5 4 17 17 S 1.76063 * 130.43157 * 180.12089 * 16 14 5 18 18 C 1.75481 * 91.53994 * 180.28636 * 17 16 14 19 19 C 1.32570 * 110.81485 * 0.02562 * 18 17 16 20 20 C 1.40290 * 120.19551 * 0.43430 * 16 14 5 21 21 H 1.08997 * 109.47429 * 300.00632 * 1 2 3 22 22 H 1.09006 * 109.46921 * 60.00160 * 1 2 3 23 23 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.83308 * 359.97438 * 4 3 2 25 25 H 0.97001 * 120.00540 * 179.97438 * 9 8 6 26 26 H 1.09001 * 109.47057 * 269.82966 * 15 14 5 27 27 H 1.09000 * 109.47008 * 29.82214 * 15 14 5 28 28 H 1.08997 * 109.47693 * 149.82676 * 15 14 5 29 29 H 1.08001 * 124.59703 * 180.02562 * 18 17 16 30 30 H 1.08004 * 122.05937 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2990 2.3436 0.0005 5 6 1.9238 3.6089 0.0000 6 6 1.1447 4.7840 0.0000 7 1 1.5484 5.6995 -0.4066 8 6 -0.1506 4.7641 0.5263 9 7 -0.5344 3.7674 1.2832 10 14 -1.3335 6.1598 0.1492 11 1 -0.6612 7.1569 -0.7219 12 1 -2.5296 5.6206 -0.5464 13 1 -1.7502 6.8116 1.4169 14 6 3.3259 3.6914 -0.0049 15 6 4.0006 5.0389 -0.0108 16 6 4.0914 2.5324 -0.0006 17 16 5.8390 2.3181 -0.0020 18 6 5.6724 0.5713 -0.0025 19 6 4.3940 0.2200 -0.0022 20 6 3.4685 1.2753 -0.0006 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.2211 2.2768 0.0005 25 1 -1.4328 3.7537 1.6487 26 1 4.1625 5.3596 -1.0399 27 1 3.3677 5.7643 0.5004 28 1 4.9593 4.9676 0.5027 29 1 6.4991 -0.1236 -0.0030 30 1 4.0838 -0.8146 -0.0028 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396191859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:31 Heat of formation + Delta-G solvation = -12.911491 kcal Electronic energy + Delta-G solvation = -15687.600597 eV Core-core repulsion = 13152.843296 eV Total energy + Delta-G solvation = -2534.757300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.15957 -36.89386 -35.21802 -33.06290 -30.46795 -28.87303 -27.09522 -25.96840 -24.41529 -22.31661 -20.18181 -19.40717 -18.14186 -16.43140 -15.85905 -15.07868 -14.86509 -14.70384 -14.09067 -13.61931 -13.06152 -12.90918 -12.70536 -12.08692 -11.76083 -11.67065 -11.48003 -11.29743 -10.96081 -10.86715 -10.71981 -10.55678 -10.30695 -9.79978 -9.65277 -9.59747 -9.05054 -8.04805 -7.34546 -7.09960 -6.37402 -4.58704 1.94275 2.67177 2.77293 2.82772 2.93067 2.98630 3.05359 3.49667 3.72179 4.24624 4.41595 5.36736 5.74435 5.81134 5.85398 6.07053 6.10769 6.32452 6.42229 6.54924 6.63122 6.70731 6.76983 6.84471 6.97628 7.09097 7.22529 7.47850 7.67764 7.71670 7.88204 8.15329 8.40081 8.59290 8.72794 9.86690 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.008948 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.159723 B = 3128.486103 C = 4194.924098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.331 6.331 3 C 0.167 3.833 4 C -0.238 4.238 5 C 0.160 3.840 6 C -0.432 4.432 7 H 0.090 0.910 8 C 0.073 3.927 9 N -0.779 5.779 10 Si 0.914 3.086 11 H -0.257 1.257 12 H -0.270 1.270 13 H -0.271 1.271 14 C -0.211 4.211 15 C -0.080 4.080 16 C -0.037 4.037 17 S 0.004 5.996 18 C -0.281 4.281 19 C -0.054 4.054 20 C -0.220 4.220 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.285 0.715 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.144 0.856 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 -1.661 -1.469 2.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.245 6.245 3 C 0.120 3.880 4 C -0.259 4.259 5 C 0.154 3.846 6 C -0.461 4.461 7 H 0.108 0.892 8 C -0.147 4.147 9 N -0.403 5.403 10 Si 0.738 3.262 11 H -0.180 1.180 12 H -0.195 1.195 13 H -0.196 1.196 14 C -0.220 4.220 15 C -0.137 4.137 16 C -0.152 4.152 17 S 0.263 5.737 18 C -0.413 4.413 19 C -0.084 4.084 20 C -0.225 4.225 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.101 0.899 24 H 0.155 0.845 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.162 0.838 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.590 -1.090 -1.319 2.336 hybrid contribution -2.034 -0.401 -0.003 2.073 sum -0.444 -1.491 -1.322 2.042 Atomic orbital electron populations 1.22844 0.79674 1.01824 1.01724 1.85874 1.20382 1.28942 1.89271 1.18463 0.89662 0.83711 0.96138 1.21036 1.00346 0.91241 1.13255 1.17111 0.89576 0.92526 0.85410 1.19709 0.96880 0.96998 1.32513 0.89204 1.26069 0.98866 0.97317 0.92466 1.69862 1.19463 1.29882 1.21059 0.86147 0.79711 0.80900 0.79482 1.17997 1.19451 1.19635 1.18997 0.92681 0.91702 1.18573 1.20332 0.98277 0.95249 0.99793 1.21859 0.94024 0.95935 1.03408 1.83490 1.04541 1.03048 1.82596 1.24412 0.99464 0.97060 1.20397 1.19666 0.91759 0.98723 0.98232 1.17013 0.90367 0.91976 1.23151 0.92353 0.93455 0.89881 0.84537 0.90434 0.93912 0.91826 0.94267 0.83833 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.79 101.05 0.99 1.60 16 2 O -0.33 -7.19 10.35 -19.23 -0.20 -7.39 16 3 C 0.17 4.06 6.72 -38.87 -0.26 3.80 16 4 C -0.24 -5.97 7.57 -39.39 -0.30 -6.27 16 5 C 0.16 4.09 5.56 -106.93 -0.59 3.49 16 6 C -0.43 -10.55 8.10 -37.94 -0.31 -10.85 16 7 H 0.09 2.09 6.82 -52.49 -0.36 1.73 16 8 C 0.07 1.67 5.17 -17.35 -0.09 1.58 16 9 N -0.78 -18.32 10.89 55.54 0.60 -17.72 16 10 Si 0.91 17.04 29.59 -169.99 -5.03 12.02 16 11 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 12 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 13 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 14 C -0.21 -5.15 5.97 -103.54 -0.62 -5.77 16 15 C -0.08 -1.68 9.26 36.00 0.33 -1.35 16 16 C -0.04 -0.90 6.29 -38.56 -0.24 -1.14 16 17 S 0.00 0.08 22.58 -107.50 -2.43 -2.35 16 18 C -0.28 -5.51 11.10 28.83 0.32 -5.19 16 19 C -0.05 -1.16 9.96 -40.69 -0.41 -1.57 16 20 C -0.22 -5.32 5.90 -106.71 -0.63 -5.95 16 21 H 0.06 1.06 7.62 -51.93 -0.40 0.67 16 22 H 0.05 0.81 7.63 -51.93 -0.40 0.42 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.14 3.34 4.21 -52.49 -0.22 3.12 16 25 H 0.28 6.01 8.30 -40.82 -0.34 5.67 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.32 6.73 -51.93 -0.35 0.97 16 28 H 0.04 0.77 7.59 -51.93 -0.39 0.37 16 29 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 LS Contribution 267.40 15.07 4.03 4.03 Total: -1.00 -26.83 267.40 -7.76 -34.59 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.94 Total: 4.43 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -1.80 Total: -27.61 kcal Atomic # 7 Polarization: -18.32 SS G_CDS: 0.60 Total: -17.72 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.20 Total: -7.39 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.02 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.43 Total: -2.35 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.83 -7.76 -34.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396191859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.680 kcal (2) G-P(sol) polarization free energy of solvation -26.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds