Wall clock time and date at job start Mon Mar 30 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35837 * 117.00153 * 2 1 4 4 C 1.35719 * 119.61777 * 0.02562 * 3 2 1 5 5 C 1.41117 * 120.33699 * 180.02562 * 4 3 2 6 6 C 1.40998 * 120.17207 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99486 * 205.74189 * 6 5 4 8 8 C 1.39828 * 120.00263 * 25.73604 * 6 5 4 9 9 N 1.30910 * 120.00082 * 15.51871 * 8 6 5 10 10 Si 1.86795 * 120.00069 * 195.52181 * 8 6 5 11 11 H 1.48501 * 109.47487 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47371 * 120.00255 * 10 8 6 13 13 H 1.48509 * 109.47139 * 239.99711 * 10 8 6 14 14 C 1.40453 * 119.64929 * 0.17856 * 5 4 3 15 15 C 1.50698 * 119.96213 * 179.76719 * 14 5 4 16 16 C 1.38901 * 120.07537 * 359.59146 * 14 5 4 17 17 S 1.76063 * 130.43157 * 180.12089 * 16 14 5 18 18 C 1.75481 * 91.53994 * 180.28636 * 17 16 14 19 19 C 1.32570 * 110.81485 * 0.02562 * 18 17 16 20 20 C 1.40290 * 120.19551 * 0.43430 * 16 14 5 21 21 H 1.08997 * 109.47429 * 300.00632 * 1 2 3 22 22 H 1.09006 * 109.46921 * 60.00160 * 1 2 3 23 23 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.83308 * 359.97438 * 4 3 2 25 25 H 0.97001 * 120.00540 * 179.97438 * 9 8 6 26 26 H 1.09001 * 109.47057 * 269.82966 * 15 14 5 27 27 H 1.09000 * 109.47008 * 29.82214 * 15 14 5 28 28 H 1.08997 * 109.47693 * 149.82676 * 15 14 5 29 29 H 1.08001 * 124.59703 * 180.02562 * 18 17 16 30 30 H 1.08004 * 122.05937 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2990 2.3436 0.0005 5 6 1.9238 3.6089 0.0000 6 6 1.1447 4.7840 0.0000 7 1 1.5484 5.6995 -0.4066 8 6 -0.1506 4.7641 0.5263 9 7 -0.5344 3.7674 1.2832 10 14 -1.3335 6.1598 0.1492 11 1 -0.6612 7.1569 -0.7219 12 1 -2.5296 5.6206 -0.5464 13 1 -1.7502 6.8116 1.4169 14 6 3.3259 3.6914 -0.0049 15 6 4.0006 5.0389 -0.0108 16 6 4.0914 2.5324 -0.0006 17 16 5.8390 2.3181 -0.0020 18 6 5.6724 0.5713 -0.0025 19 6 4.3940 0.2200 -0.0022 20 6 3.4685 1.2753 -0.0006 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.2211 2.2768 0.0005 25 1 -1.4328 3.7537 1.6487 26 1 4.1625 5.3596 -1.0399 27 1 3.3677 5.7643 0.5004 28 1 4.9593 4.9676 0.5027 29 1 6.4991 -0.1236 -0.0030 30 1 4.0838 -0.8146 -0.0028 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396191859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:31 Heat of formation + Delta-G solvation = -26.527752 kcal Electronic energy + Delta-G solvation = -15688.191042 eV Core-core repulsion = 13152.843296 eV Total energy + Delta-G solvation = -2535.347746 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88185 -38.58099 -36.93680 -34.78989 -32.20902 -30.61881 -28.64912 -27.71441 -26.09576 -24.05152 -21.91718 -21.11105 -19.86832 -18.18033 -17.52754 -16.71647 -16.48696 -16.34592 -15.85656 -15.17211 -14.68644 -14.61860 -14.39565 -13.74014 -13.41263 -13.24178 -13.04857 -12.93287 -12.63407 -12.49924 -12.31265 -12.10773 -11.94363 -11.53376 -11.34966 -11.30560 -10.77717 -9.75741 -9.11840 -8.80892 -8.10410 -6.39643 0.23001 0.93346 0.98283 1.32462 1.39355 1.40198 1.54834 1.81406 2.16683 2.63203 2.67109 3.54027 4.21961 4.38620 4.42942 4.45188 4.58969 4.67979 4.77726 4.87748 4.95097 4.96795 5.05427 5.12907 5.26324 5.41179 5.48008 5.73334 5.92781 5.93604 6.07725 6.37657 6.62189 6.79520 6.94181 8.18957 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.008948 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.159723 B = 3128.486103 C = 4194.924098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.337 6.337 3 C 0.154 3.846 4 C -0.256 4.256 5 C 0.128 3.872 6 C -0.459 4.459 7 H 0.092 0.908 8 C 0.036 3.964 9 N -0.807 5.807 10 Si 0.986 3.014 11 H -0.255 1.255 12 H -0.262 1.262 13 H -0.265 1.265 14 C -0.236 4.236 15 C -0.071 4.071 16 C -0.069 4.069 17 S 0.040 5.960 18 C -0.258 4.258 19 C -0.078 4.078 20 C -0.242 4.242 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.126 0.874 24 H 0.134 0.866 25 H 0.294 0.706 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.184 0.816 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -1.921 -1.685 2.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.251 6.251 3 C 0.107 3.893 4 C -0.277 4.277 5 C 0.122 3.878 6 C -0.487 4.487 7 H 0.110 0.890 8 C -0.181 4.181 9 N -0.432 5.432 10 Si 0.806 3.194 11 H -0.178 1.178 12 H -0.187 1.187 13 H -0.190 1.190 14 C -0.244 4.244 15 C -0.128 4.128 16 C -0.184 4.184 17 S 0.299 5.701 18 C -0.390 4.390 19 C -0.108 4.108 20 C -0.247 4.247 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.151 0.849 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.201 0.799 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.137 -1.360 -1.533 2.961 hybrid contribution -2.098 -0.451 0.079 2.147 sum 0.040 -1.810 -1.454 2.322 Atomic orbital electron populations 1.23081 0.77656 1.04415 1.01070 1.85848 1.22408 1.27834 1.89036 1.18658 0.90298 0.84292 0.96045 1.21104 1.00374 0.91739 1.14469 1.17510 0.90642 0.93219 0.86398 1.19921 0.98161 0.96888 1.33741 0.88999 1.26889 0.99820 0.99763 0.91651 1.69895 1.20327 1.31496 1.21470 0.85080 0.77323 0.77637 0.79341 1.17805 1.18699 1.18995 1.19379 0.92815 0.93288 1.18956 1.20278 0.98320 0.93734 1.00488 1.22266 0.96503 0.95937 1.03670 1.83294 1.01370 1.03567 1.81831 1.24954 0.99982 0.97311 1.16798 1.19810 0.91991 0.98979 0.99981 1.17499 0.90953 0.93184 1.23105 0.93573 0.93548 0.85572 0.84863 0.89536 0.92905 0.92140 0.93205 0.79868 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 9.79 113.37 1.11 2.24 16 2 O -0.34 -14.72 10.35 -91.72 -0.95 -15.67 16 3 C 0.15 7.65 6.72 22.73 0.15 7.81 16 4 C -0.26 -13.29 7.57 22.39 0.17 -13.12 16 5 C 0.13 6.77 5.56 -21.36 -0.12 6.65 16 6 C -0.46 -22.96 8.10 23.33 0.19 -22.77 16 7 H 0.09 4.38 6.82 -2.91 -0.02 4.36 16 8 C 0.04 1.68 5.17 85.22 0.44 2.12 16 9 N -0.81 -38.75 10.89 21.81 0.24 -38.51 16 10 Si 0.99 34.84 29.59 68.60 2.03 36.87 16 11 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 12 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 13 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 14 C -0.24 -11.74 5.97 -19.17 -0.11 -11.85 16 15 C -0.07 -3.02 9.26 71.24 0.66 -2.36 16 16 C -0.07 -3.31 6.29 22.93 0.14 -3.16 16 17 S 0.04 1.54 22.58 -56.49 -1.28 0.27 16 18 C -0.26 -9.34 11.10 66.67 0.74 -8.60 16 19 C -0.08 -3.24 9.96 21.64 0.22 -3.02 16 20 C -0.24 -11.73 5.90 -21.22 -0.13 -11.86 16 21 H 0.05 1.71 7.62 -2.39 -0.02 1.69 16 22 H 0.05 1.61 7.63 -2.38 -0.02 1.59 16 23 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 24 H 0.13 6.80 4.21 -2.91 -0.01 6.78 16 25 H 0.29 12.53 8.30 -92.71 -0.77 11.76 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.54 6.73 -2.39 -0.02 2.52 16 28 H 0.05 1.93 7.59 -2.39 -0.02 1.91 16 29 H 0.18 5.11 8.06 -2.91 -0.02 5.09 16 30 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -58.27 267.40 4.67 -53.60 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 1.16 Total: 21.37 kcal Atomic # 6 Polarization: -61.39 SS G_CDS: 3.46 Total: -57.93 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.24 Total: -38.51 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.95 Total: -15.67 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.28 Total: 0.27 kcal Total: -58.27 4.67 -53.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396191859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.075 kcal (2) G-P(sol) polarization free energy of solvation -58.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds