Wall clock time and date at job start Mon Mar 30 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35829 * 116.99792 * 2 1 4 4 C 1.35783 * 119.87684 * 0.02562 * 3 2 1 5 5 C 1.41813 * 120.82033 * 179.74624 * 4 3 2 6 6 C 1.40532 * 128.57892 * 179.97438 * 5 4 3 7 7 C 1.50701 * 122.05809 * 359.97438 * 6 5 4 8 8 C 1.32439 * 115.88573 * 179.97438 * 6 5 4 9 9 S 1.75468 * 110.87665 * 0.02562 * 8 6 5 10 10 C 1.40428 * 119.09169 * 359.97353 * 5 4 3 11 11 C 1.38762 * 120.25924 * 0.03906 * 10 5 4 12 12 C 1.40369 * 120.05391 * 359.94981 * 11 10 5 13 13 C 1.40865 * 120.23712 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99971 * 204.92445 * 13 12 11 15 15 C 1.39897 * 119.99690 * 24.91674 * 13 12 11 16 16 N 1.30901 * 120.00521 * 17.84980 * 15 13 12 17 17 Si 1.86808 * 119.99883 * 197.84016 * 15 13 12 18 18 H 1.48501 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46683 * 120.00379 * 17 15 13 20 20 H 1.48499 * 109.47411 * 240.00881 * 17 15 13 21 21 H 1.08994 * 109.46844 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46531 * 299.99573 * 1 2 3 23 23 H 1.08997 * 109.47354 * 59.99706 * 1 2 3 24 24 H 1.08000 * 119.58639 * 359.72055 * 4 3 2 25 25 H 1.09000 * 109.47471 * 90.00413 * 7 6 5 26 26 H 1.08997 * 109.47124 * 209.99964 * 7 6 5 27 27 H 1.08994 * 109.47293 * 330.00001 * 7 6 5 28 28 H 1.08004 * 124.56238 * 180.02562 * 8 6 5 29 29 H 1.08005 * 119.97214 * 180.02562 * 11 10 5 30 30 H 0.96999 * 120.00819 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.3036 2.3474 0.0005 5 6 1.9265 3.6214 0.0059 6 6 1.3244 4.8913 0.0068 7 6 -0.1723 5.0669 0.0011 8 6 2.1534 5.9242 0.0129 9 16 3.8234 5.3857 0.0176 10 6 3.3288 3.6958 0.0113 11 6 4.0906 2.5360 0.0105 12 6 3.4610 1.2814 0.0054 13 6 4.2305 0.1016 0.0051 14 1 3.8164 -0.8131 -0.3926 15 6 5.5312 0.1148 0.5200 16 7 5.9147 1.0896 1.3049 17 14 6.7209 -1.2591 0.0875 18 1 6.0479 -2.2325 -0.8096 19 1 7.9061 -0.6887 -0.6016 20 1 7.1543 -1.9479 1.3297 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.2257 2.2808 -0.0036 25 1 -0.5374 5.1066 1.0273 26 1 -0.4273 5.9944 -0.5114 27 1 -0.6347 4.2267 -0.5168 28 1 1.8432 6.9587 0.0147 29 1 5.1688 2.5986 0.0151 30 1 6.8165 1.0986 1.6622 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396194443.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:35 Heat of formation + Delta-G solvation = -10.209178 kcal Electronic energy + Delta-G solvation = -15508.232070 eV Core-core repulsion = 12973.591951 eV Total energy + Delta-G solvation = -2534.640119 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.08965 -37.17472 -35.11685 -32.95385 -29.57142 -29.20535 -27.31105 -26.47791 -25.07361 -21.69641 -20.89087 -18.77315 -17.75625 -16.46208 -16.12355 -15.25762 -14.88010 -14.78192 -13.89233 -13.42894 -13.33826 -12.98116 -12.63555 -12.16437 -12.09021 -11.84702 -11.37166 -11.36251 -11.12716 -10.94415 -10.81366 -10.58968 -10.21878 -9.79237 -9.58730 -9.49677 -9.00612 -8.26886 -7.21630 -6.93788 -6.50863 -4.38775 1.86593 2.75110 2.77915 2.91156 3.01554 3.07760 3.14610 3.47193 3.82296 4.32132 4.46404 5.37548 5.61743 5.67641 5.70929 5.72423 5.87841 6.00119 6.01150 6.05654 6.28291 6.46690 6.77804 6.92677 6.98013 7.08476 7.24316 7.46911 7.57450 7.76778 7.90831 8.19385 8.46221 8.61181 8.82782 9.97766 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.008813 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.919156 B = 3176.214541 C = 4351.222098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.047 3.953 4 C -0.151 4.151 5 C -0.178 4.178 6 C -0.049 4.049 7 C -0.091 4.091 8 C -0.268 4.268 9 S 0.000 6.000 10 C -0.082 4.082 11 C -0.153 4.153 12 C 0.117 3.883 13 C -0.420 4.420 14 H 0.091 0.909 15 C 0.069 3.931 16 N -0.774 5.774 17 Si 0.914 3.086 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.272 1.272 21 H 0.085 0.915 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.143 0.857 29 H 0.129 0.871 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 1.626 -1.580 5.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.226 6.226 3 C 0.003 3.997 4 C -0.173 4.173 5 C -0.184 4.184 6 C -0.061 4.061 7 C -0.151 4.151 8 C -0.401 4.401 9 S 0.261 5.739 10 C -0.197 4.197 11 C -0.179 4.179 12 C 0.111 3.889 13 C -0.449 4.449 14 H 0.109 0.891 15 C -0.151 4.151 16 N -0.398 5.398 17 Si 0.738 3.262 18 H -0.180 1.180 19 H -0.195 1.195 20 H -0.197 1.197 21 H 0.103 0.897 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.147 0.853 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.847 2.352 -1.420 4.727 hybrid contribution -1.029 -0.943 0.004 1.396 sum -4.875 1.409 -1.416 5.269 Atomic orbital electron populations 1.22795 0.81334 1.02110 1.00195 1.86045 1.18629 1.27887 1.89994 1.18727 0.92507 0.82890 1.05582 1.20152 0.97416 0.91039 1.08650 1.17274 0.91548 0.92049 1.17534 1.18500 0.95459 0.91976 1.00170 1.20482 0.91954 1.01310 1.01330 1.24260 0.95307 1.00937 1.19587 1.83564 1.07607 1.00343 1.82345 1.22236 0.95870 0.95428 1.06191 1.20312 0.98966 0.88034 1.10614 1.16917 0.87180 0.93545 0.91286 1.19597 0.96621 0.96642 1.32012 0.89101 1.26049 0.99024 0.97325 0.92733 1.69862 1.19397 1.30228 1.20265 0.86144 0.79735 0.80824 0.79503 1.18043 1.19452 1.19729 0.89672 0.93872 0.93944 0.87907 0.92001 0.92468 0.92164 0.83967 0.85308 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.80 101.05 0.99 1.50 16 2 O -0.31 -6.88 9.76 -19.20 -0.19 -7.07 16 3 C 0.05 1.15 6.66 -39.14 -0.26 0.89 16 4 C -0.15 -3.41 8.60 -39.10 -0.34 -3.75 16 5 C -0.18 -4.17 5.86 -106.84 -0.63 -4.80 16 6 C -0.05 -0.99 5.82 -105.68 -0.61 -1.61 16 7 C -0.09 -1.44 9.91 36.01 0.36 -1.08 16 8 C -0.27 -5.24 10.80 28.81 0.31 -4.93 16 9 S 0.00 -0.01 23.29 -107.50 -2.50 -2.51 16 10 C -0.08 -2.04 6.46 -38.56 -0.25 -2.29 16 11 C -0.15 -4.03 8.71 -38.59 -0.34 -4.36 16 12 C 0.12 3.09 5.57 -106.78 -0.60 2.50 16 13 C -0.42 -10.86 8.69 -37.97 -0.33 -11.19 16 14 H 0.09 2.30 7.64 -52.49 -0.40 1.89 16 15 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16 16 N -0.77 -19.41 10.98 55.55 0.61 -18.80 16 17 Si 0.91 18.01 29.60 -169.99 -5.03 12.97 16 18 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.04 0.66 7.64 -51.93 -0.40 0.26 16 23 H 0.04 0.63 7.63 -51.93 -0.40 0.23 16 24 H 0.10 2.00 5.45 -52.49 -0.29 1.71 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 27 H 0.06 0.91 7.30 -51.93 -0.38 0.53 16 28 H 0.14 2.35 8.06 -52.48 -0.42 1.92 16 29 H 0.13 3.48 6.16 -52.48 -0.32 3.16 16 30 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 269.53 15.07 4.06 4.06 Total: -1.00 -28.00 269.53 -7.84 -35.84 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.01 Total: 3.04 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -1.78 Total: -27.53 kcal Atomic # 7 Polarization: -19.41 SS G_CDS: 0.61 Total: -18.80 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.19 Total: -7.07 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.50 Total: -2.51 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.00 -7.84 -35.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396194443.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.631 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds