Wall clock time and date at job start Mon Mar 30 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35829 * 116.99792 * 2 1 4 4 C 1.35783 * 119.87684 * 0.02562 * 3 2 1 5 5 C 1.41813 * 120.82033 * 179.74624 * 4 3 2 6 6 C 1.40532 * 128.57892 * 179.97438 * 5 4 3 7 7 C 1.50701 * 122.05809 * 359.97438 * 6 5 4 8 8 C 1.32439 * 115.88573 * 179.97438 * 6 5 4 9 9 S 1.75468 * 110.87665 * 0.02562 * 8 6 5 10 10 C 1.40428 * 119.09169 * 359.97353 * 5 4 3 11 11 C 1.38762 * 120.25924 * 0.03906 * 10 5 4 12 12 C 1.40369 * 120.05391 * 359.94981 * 11 10 5 13 13 C 1.40865 * 120.23712 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99971 * 204.92445 * 13 12 11 15 15 C 1.39897 * 119.99690 * 24.91674 * 13 12 11 16 16 N 1.30901 * 120.00521 * 17.84980 * 15 13 12 17 17 Si 1.86808 * 119.99883 * 197.84016 * 15 13 12 18 18 H 1.48501 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46683 * 120.00379 * 17 15 13 20 20 H 1.48499 * 109.47411 * 240.00881 * 17 15 13 21 21 H 1.08994 * 109.46844 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46531 * 299.99573 * 1 2 3 23 23 H 1.08997 * 109.47354 * 59.99706 * 1 2 3 24 24 H 1.08000 * 119.58639 * 359.72055 * 4 3 2 25 25 H 1.09000 * 109.47471 * 90.00413 * 7 6 5 26 26 H 1.08997 * 109.47124 * 209.99964 * 7 6 5 27 27 H 1.08994 * 109.47293 * 330.00001 * 7 6 5 28 28 H 1.08004 * 124.56238 * 180.02562 * 8 6 5 29 29 H 1.08005 * 119.97214 * 180.02562 * 11 10 5 30 30 H 0.96999 * 120.00819 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.3036 2.3474 0.0005 5 6 1.9265 3.6214 0.0059 6 6 1.3244 4.8913 0.0068 7 6 -0.1723 5.0669 0.0011 8 6 2.1534 5.9242 0.0129 9 16 3.8234 5.3857 0.0176 10 6 3.3288 3.6958 0.0113 11 6 4.0906 2.5360 0.0105 12 6 3.4610 1.2814 0.0054 13 6 4.2305 0.1016 0.0051 14 1 3.8164 -0.8131 -0.3926 15 6 5.5312 0.1148 0.5200 16 7 5.9147 1.0896 1.3049 17 14 6.7209 -1.2591 0.0875 18 1 6.0479 -2.2325 -0.8096 19 1 7.9061 -0.6887 -0.6016 20 1 7.1543 -1.9479 1.3297 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.2257 2.2808 -0.0036 25 1 -0.5374 5.1066 1.0273 26 1 -0.4273 5.9944 -0.5114 27 1 -0.6347 4.2267 -0.5168 28 1 1.8432 6.9587 0.0147 29 1 5.1688 2.5986 0.0151 30 1 6.8165 1.0986 1.6622 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396194443.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:35 Heat of formation + Delta-G solvation = -25.396485 kcal Electronic energy + Delta-G solvation = -15508.890641 eV Core-core repulsion = 12973.591951 eV Total energy + Delta-G solvation = -2535.298690 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80875 -38.81572 -36.85793 -34.68838 -31.27329 -30.96949 -28.71790 -27.98168 -26.81251 -23.45994 -22.64462 -20.40232 -19.56442 -18.22655 -17.75330 -16.94995 -16.55860 -16.32501 -15.57497 -14.92353 -14.76802 -14.66997 -14.22637 -13.78034 -13.71052 -13.41126 -12.97624 -12.89325 -12.67567 -12.47952 -12.32057 -12.14891 -11.89007 -11.50150 -11.33478 -11.22620 -10.72845 -10.02484 -9.03556 -8.72204 -8.23346 -6.29564 0.15889 0.91318 1.02775 1.31723 1.38354 1.46481 1.54221 1.78507 2.18013 2.65777 2.79213 3.51180 4.09007 4.22447 4.41491 4.45991 4.48360 4.67002 4.75280 4.80981 4.89778 4.97919 5.04223 5.15172 5.25169 5.32465 5.48162 5.66941 5.83819 6.00193 6.07745 6.32824 6.62777 6.75593 7.06483 8.22180 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.008813 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.919156 B = 3176.214541 C = 4351.222098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.334 6.334 3 C 0.037 3.963 4 C -0.153 4.153 5 C -0.182 4.182 6 C -0.066 4.066 7 C -0.087 4.087 8 C -0.249 4.249 9 S 0.002 5.998 10 C -0.120 4.120 11 C -0.175 4.175 12 C 0.083 3.917 13 C -0.457 4.457 14 H 0.084 0.916 15 C 0.030 3.970 16 N -0.812 5.812 17 Si 0.987 3.013 18 H -0.255 1.255 19 H -0.263 1.263 20 H -0.262 1.262 21 H 0.116 0.884 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.137 0.863 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.183 0.817 29 H 0.108 0.892 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 2.523 -1.812 8.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.249 6.249 3 C -0.008 4.008 4 C -0.174 4.174 5 C -0.189 4.189 6 C -0.078 4.078 7 C -0.146 4.146 8 C -0.382 4.382 9 S 0.263 5.737 10 C -0.234 4.234 11 C -0.202 4.202 12 C 0.077 3.923 13 C -0.486 4.486 14 H 0.102 0.898 15 C -0.186 4.186 16 N -0.436 5.436 17 Si 0.807 3.193 18 H -0.179 1.179 19 H -0.187 1.187 20 H -0.187 1.187 21 H 0.135 0.865 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.154 0.846 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.200 0.800 29 H 0.126 0.874 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.769 3.252 -1.651 6.825 hybrid contribution -0.612 -1.039 0.078 1.208 sum -6.381 2.214 -1.572 6.935 Atomic orbital electron populations 1.23179 0.78168 1.04699 1.01259 1.86001 1.21921 1.27104 1.89869 1.18825 0.92222 0.84308 1.05451 1.20461 0.99020 0.90232 1.07674 1.17849 0.91244 0.93890 1.15881 1.18898 0.98310 0.90410 1.00142 1.20554 0.88216 1.03062 1.02789 1.24800 0.93580 1.02797 1.16997 1.83508 1.09740 0.98291 1.82112 1.22581 0.97063 0.96704 1.07085 1.20189 0.98214 0.89192 1.12570 1.17289 0.88898 0.93886 0.92237 1.19721 0.98202 0.96484 1.34209 0.89783 1.26896 1.00066 0.99760 0.91879 1.69914 1.20164 1.32208 1.21358 0.85077 0.77212 0.77595 0.79421 1.17851 1.18736 1.18698 0.86530 0.92888 0.92520 0.84559 0.90527 0.89686 0.91578 0.80001 0.87425 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.80 113.37 1.11 1.77 16 2 O -0.33 -14.84 9.76 -91.63 -0.89 -15.74 16 3 C 0.04 1.84 6.66 22.56 0.15 1.99 16 4 C -0.15 -6.77 8.60 22.58 0.19 -6.58 16 5 C -0.18 -8.36 5.86 -21.30 -0.12 -8.48 16 6 C -0.07 -2.47 5.82 -20.42 -0.12 -2.59 16 7 C -0.09 -2.33 9.91 71.24 0.71 -1.63 16 8 C -0.25 -8.92 10.80 66.70 0.72 -8.20 16 9 S 0.00 0.07 23.29 -56.49 -1.32 -1.24 16 10 C -0.12 -6.04 6.46 22.93 0.15 -5.89 16 11 C -0.18 -9.74 8.71 22.91 0.20 -9.54 16 12 C 0.08 4.59 5.57 -21.26 -0.12 4.47 16 13 C -0.46 -24.93 8.69 23.31 0.20 -24.73 16 14 H 0.08 4.49 7.64 -2.92 -0.02 4.47 16 15 C 0.03 1.54 5.13 85.23 0.44 1.97 16 16 N -0.81 -42.82 10.98 21.82 0.24 -42.58 16 17 Si 0.99 38.08 29.60 68.60 2.03 40.11 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 22 H 0.05 1.49 7.64 -2.38 -0.02 1.47 16 23 H 0.06 1.54 7.63 -2.39 -0.02 1.53 16 24 H 0.14 4.94 5.45 -2.91 -0.02 4.92 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 27 H 0.07 1.70 7.30 -2.39 -0.02 1.68 16 28 H 0.18 5.04 8.06 -2.91 -0.02 5.01 16 29 H 0.11 6.25 6.16 -2.91 -0.02 6.23 16 30 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 Total: -1.00 -63.72 269.53 4.73 -58.99 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.16 Total: 17.87 kcal Atomic # 6 Polarization: -60.92 SS G_CDS: 3.51 Total: -57.42 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.24 Total: -42.58 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.89 Total: -15.74 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.32 Total: -1.24 kcal Total: -63.72 4.73 -58.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396194443.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.597 kcal (2) G-P(sol) polarization free energy of solvation -63.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds