Wall clock time and date at job start Mon Mar 30 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36122 * 116.99659 * 2 1 4 4 C 1.32993 * 122.13045 * 0.02562 * 3 2 1 5 5 S 1.75466 * 110.82493 * 179.97438 * 4 3 2 6 6 C 1.76047 * 91.60982 * 359.97438 * 5 4 3 7 7 C 1.40402 * 109.44903 * 359.97438 * 6 5 4 8 8 C 1.41965 * 119.02312 * 179.97438 * 7 6 5 9 9 C 1.35204 * 120.87016 * 359.80815 * 8 7 6 10 10 C 1.41223 * 120.38804 * 0.45457 * 9 8 7 11 11 C 1.40960 * 120.20543 * 179.79456 * 10 9 8 12 12 H 1.08008 * 120.00192 * 206.56125 * 11 10 9 13 13 C 1.39809 * 120.00084 * 26.55721 * 11 10 9 14 14 N 1.30921 * 120.00124 * 16.47579 * 13 11 10 15 15 Si 1.86804 * 120.00263 * 196.48084 * 13 11 10 16 16 H 1.48501 * 109.46915 * 265.19080 * 15 13 11 17 17 H 1.48506 * 109.46854 * 25.18935 * 15 13 11 18 18 H 1.48499 * 109.47179 * 145.18936 * 15 13 11 19 19 C 1.38813 * 130.40400 * 180.02562 * 6 5 4 20 20 C 1.50704 * 120.00787 * 359.93624 * 19 6 5 21 21 H 1.09003 * 109.47222 * 300.00645 * 1 2 3 22 22 H 1.09006 * 109.46849 * 60.00308 * 1 2 3 23 23 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 24 24 H 1.07997 * 124.58469 * 359.94137 * 4 3 2 25 25 H 1.08003 * 119.56353 * 179.97438 * 8 7 6 26 26 H 1.08003 * 119.80599 * 180.24454 * 9 8 7 27 27 H 0.96997 * 120.00500 * 180.02562 * 14 13 11 28 28 H 1.09001 * 109.46982 * 270.01624 * 20 19 6 29 29 H 1.08994 * 109.47708 * 30.02356 * 20 19 6 30 30 H 1.09000 * 109.46523 * 150.02731 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2129 0.0000 4 6 1.3645 2.3544 0.0005 5 16 2.4520 3.7314 0.0011 6 6 3.8637 2.6794 0.0014 7 6 3.4475 1.3385 0.0016 8 6 4.4289 0.3127 0.0014 9 6 5.7470 0.6137 -0.0030 10 6 6.1723 1.9604 0.0023 11 6 7.5475 2.2698 0.0020 12 1 7.8912 3.2028 0.4239 13 6 8.4666 1.3690 -0.5442 14 7 8.0530 0.4086 -1.3320 15 14 10.2850 1.5355 -0.1499 16 1 10.9529 2.3224 -1.2175 17 1 10.4474 2.2303 1.1525 18 1 10.9000 0.1861 -0.0712 19 6 5.2168 2.9894 0.0024 20 6 5.6600 4.4298 0.0019 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.2868 2.4243 0.0000 25 1 4.1185 -0.7217 0.0020 26 1 6.4790 -0.1804 -0.0072 27 1 8.6906 -0.2166 -1.7107 28 1 5.7674 4.7766 -1.0259 29 1 4.9161 5.0391 0.5151 30 1 6.6173 4.5154 0.5161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396194532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:36 Heat of formation + Delta-G solvation = -11.919013 kcal Electronic energy + Delta-G solvation = -15380.341725 eV Core-core repulsion = 12845.627462 eV Total energy + Delta-G solvation = -2534.714263 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22595 -37.59815 -34.48717 -32.63627 -31.25822 -28.67257 -27.38758 -26.11097 -24.83118 -22.00060 -20.32062 -19.66540 -17.61146 -16.36640 -16.14332 -15.46059 -15.26444 -14.81918 -14.00388 -13.53571 -13.27890 -12.96918 -12.39948 -11.96152 -11.85606 -11.72452 -11.51956 -11.26905 -11.19386 -11.07818 -10.73390 -10.56426 -10.38262 -9.82497 -9.70692 -9.37817 -9.16785 -8.05301 -7.36945 -7.07594 -6.45998 -4.54941 1.89068 2.64450 2.80074 2.85830 2.95273 3.00299 3.04753 3.47711 3.74359 3.96665 4.43269 5.36661 5.37723 5.44254 5.61501 5.75700 6.08361 6.25074 6.29309 6.57866 6.62548 6.72402 6.76536 6.84193 6.93783 7.01577 7.34702 7.50511 7.67005 7.80112 7.94903 8.06917 8.33480 8.59090 8.67913 9.88526 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.006865 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.632256 B = 4077.461479 C = 4810.594232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.175 3.825 4 C -0.384 4.384 5 S 0.019 5.981 6 C -0.043 4.043 7 C -0.214 4.214 8 C -0.054 4.054 9 C -0.147 4.147 10 C 0.141 3.859 11 C -0.432 4.432 12 H 0.090 0.910 13 C 0.072 3.928 14 N -0.775 5.775 15 Si 0.914 3.086 16 H -0.267 1.267 17 H -0.257 1.257 18 H -0.273 1.273 19 C -0.195 4.195 20 C -0.080 4.080 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.145 0.855 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.287 0.713 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 0.580 1.575 5.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.517 4.517 5 S 0.276 5.724 6 C -0.157 4.157 7 C -0.220 4.220 8 C -0.075 4.075 9 C -0.166 4.166 10 C 0.135 3.865 11 C -0.461 4.461 12 H 0.108 0.892 13 C -0.148 4.148 14 N -0.398 5.398 15 Si 0.738 3.262 16 H -0.192 1.192 17 H -0.181 1.181 18 H -0.197 1.197 19 C -0.204 4.204 20 C -0.137 4.137 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.163 0.837 25 H 0.116 0.884 26 H 0.142 0.858 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.108 1.670 1.417 5.558 hybrid contribution 0.505 -1.454 -0.026 1.539 sum -4.604 0.216 1.391 4.814 Atomic orbital electron populations 1.22886 0.79750 1.02751 1.00879 1.86050 1.20104 1.27315 1.89160 1.17731 0.91097 0.83317 0.95854 1.24133 1.01823 0.95341 1.30439 1.83330 0.96259 1.09061 1.83709 1.21825 0.95975 0.94062 1.03871 1.16986 0.89249 0.93519 1.22207 1.20300 0.92440 0.96088 0.98647 1.20914 0.94111 0.97268 1.04355 1.17417 0.92443 0.90537 0.86115 1.19714 0.90918 1.03912 1.31532 0.89169 1.26063 1.02446 0.93662 0.92665 1.69856 1.37955 1.12267 1.19748 0.86178 0.80681 0.78981 0.80370 1.19219 1.18060 1.19746 1.18979 0.89073 0.95177 1.17137 1.20342 1.00195 0.92886 1.00271 0.93301 0.93298 0.89100 0.83698 0.88386 0.85783 0.90192 0.93374 0.94328 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.91 101.05 1.00 1.46 16 2 O -0.31 -6.12 10.48 -20.13 -0.21 -6.33 16 3 C 0.17 3.83 6.66 -40.50 -0.27 3.56 16 4 C -0.38 -7.71 9.97 28.91 0.29 -7.42 16 5 S 0.02 0.39 22.57 -107.50 -2.43 -2.03 16 6 C -0.04 -1.02 6.29 -38.55 -0.24 -1.26 16 7 C -0.21 -5.20 5.89 -106.76 -0.63 -5.83 16 8 C -0.05 -1.31 9.91 -39.24 -0.39 -1.70 16 9 C -0.15 -3.70 8.56 -39.53 -0.34 -4.04 16 10 C 0.14 3.58 5.54 -106.91 -0.59 2.99 16 11 C -0.43 -10.52 8.41 -37.96 -0.32 -10.84 16 12 H 0.09 2.07 6.26 -52.48 -0.33 1.74 16 13 C 0.07 1.67 5.14 -17.35 -0.09 1.58 16 14 N -0.77 -18.55 11.00 55.54 0.61 -17.94 16 15 Si 0.91 17.09 29.59 -169.99 -5.03 12.06 16 16 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 17 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 18 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 19 C -0.19 -4.74 5.96 -103.58 -0.62 -5.35 16 20 C -0.08 -1.67 9.48 36.01 0.34 -1.33 16 21 H 0.05 0.62 7.82 -51.93 -0.41 0.22 16 22 H 0.05 0.63 7.82 -51.93 -0.41 0.22 16 23 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.15 2.48 6.88 -52.49 -0.36 2.12 16 25 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 26 H 0.12 3.12 6.24 -52.48 -0.33 2.79 16 27 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.74 7.59 -51.93 -0.39 0.34 16 30 H 0.06 1.23 6.25 -51.93 -0.32 0.91 16 LS Contribution 268.18 15.07 4.04 4.04 Total: -1.00 -27.03 268.18 -7.82 -34.85 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.95 Total: 3.56 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -1.86 Total: -28.20 kcal Atomic # 7 Polarization: -18.55 SS G_CDS: 0.61 Total: -17.94 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.21 Total: -6.33 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.43 Total: -2.03 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.03 -7.82 -34.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396194532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.929 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds