Wall clock time and date at job start Mon Mar 30 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35653 * 117.00237 * 2 1 4 4 C 1.38669 * 120.14266 * 357.01873 * 3 2 1 5 5 C 1.37377 * 120.68367 * 180.31646 * 4 3 2 6 6 C 1.41610 * 121.03064 * 359.68287 * 5 4 3 7 7 C 1.45463 * 129.04030 * 179.97438 * 6 5 4 8 8 C 1.50703 * 122.55894 * 359.97438 * 7 6 5 9 9 C 1.31900 * 114.88667 * 180.02562 * 7 6 5 10 10 S 1.75303 * 111.30018 * 0.02562 * 9 7 6 11 11 C 1.39241 * 119.10463 * 359.97438 * 6 5 4 12 12 C 1.40967 * 120.13980 * 176.71102 * 3 2 1 13 13 C 1.40751 * 120.14640 * 359.97438 * 12 3 2 14 14 H 1.08007 * 119.99718 * 322.75348 * 13 12 3 15 15 C 1.39853 * 120.00046 * 142.75225 * 13 12 3 16 16 N 1.30949 * 120.00189 * 332.00199 * 15 13 12 17 17 Si 1.86797 * 120.00153 * 151.99832 * 15 13 12 18 18 H 1.48498 * 109.47403 * 180.02562 * 17 15 13 19 19 H 1.48508 * 109.47090 * 300.00149 * 17 15 13 20 20 H 1.48502 * 109.47161 * 59.99819 * 17 15 13 21 21 H 1.08998 * 109.47070 * 59.99345 * 1 2 3 22 22 H 1.08994 * 109.47457 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46633 * 299.99917 * 1 2 3 24 24 H 1.08004 * 119.65812 * 359.97438 * 4 3 2 25 25 H 1.07998 * 119.48129 * 179.66726 * 5 4 3 26 26 H 1.09003 * 109.46546 * 270.04589 * 8 7 6 27 27 H 1.09005 * 109.46967 * 30.03950 * 8 7 6 28 28 H 1.08996 * 109.47163 * 150.04180 * 8 7 6 29 29 H 1.08005 * 124.34676 * 179.97438 * 9 7 6 30 30 H 0.97003 * 119.99295 * 353.12195 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2941 2.3728 -0.0624 5 6 1.9065 3.6025 -0.0696 6 6 3.3167 3.7160 -0.0070 7 6 4.1401 4.9152 -0.0039 8 6 3.5537 6.3018 -0.0729 9 6 5.4391 4.6964 0.0627 10 16 5.7933 2.9808 0.1287 11 6 4.0869 2.5582 0.0633 12 6 3.4507 1.2867 0.0699 13 6 4.2213 0.1110 0.1406 14 1 3.8661 -0.7339 0.7119 15 6 5.4469 0.0369 -0.5289 16 7 5.6469 0.7492 -1.6094 17 14 6.7988 -1.0780 0.1181 18 1 7.9890 -0.9762 -0.7640 19 1 7.1669 -0.6619 1.4953 20 1 6.3153 -2.4820 0.1379 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.2169 2.3120 -0.1113 25 1 1.3031 4.4965 -0.1240 26 1 3.4600 6.6051 -1.1157 27 1 2.5697 6.3039 0.3959 28 1 4.2073 6.9991 0.4510 29 1 6.1882 5.4743 0.0743 30 1 4.9151 1.2505 -2.0021 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396195047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:39 Heat of formation + Delta-G solvation = -29.533706 kcal Electronic energy + Delta-G solvation = -15746.538164 eV Core-core repulsion = 13211.060070 eV Total energy + Delta-G solvation = -2535.478094 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65839 -38.81037 -36.62752 -34.94535 -31.69366 -30.35958 -28.47161 -27.93634 -26.63826 -23.20015 -23.07941 -20.55481 -19.68913 -18.51061 -17.44399 -16.90053 -16.37310 -16.18054 -15.69329 -15.11229 -14.86347 -14.64351 -14.26205 -13.89015 -13.60785 -13.37129 -13.10800 -12.94188 -12.55770 -12.32355 -12.27720 -12.03097 -11.98035 -11.40780 -11.29504 -11.04058 -10.58819 -10.04927 -9.27962 -8.82388 -8.14464 -6.35458 0.19116 0.69647 1.08407 1.45780 1.48008 1.62684 1.72326 1.75192 2.32361 2.66692 2.84758 3.31207 3.90948 4.20710 4.34220 4.37873 4.44095 4.50861 4.63754 4.69601 4.85359 4.90475 4.93703 5.05061 5.18221 5.41439 5.52378 5.65202 5.76872 5.92951 6.01979 6.14371 6.41568 6.83331 7.07205 8.03710 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.013372 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.258923 B = 2093.400152 C = 3622.536587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.337 6.337 3 C 0.006 3.994 4 C -0.165 4.165 5 C -0.166 4.166 6 C -0.089 4.089 7 C -0.101 4.101 8 C -0.083 4.083 9 C -0.231 4.231 10 S 0.060 5.940 11 C -0.210 4.210 12 C 0.070 3.930 13 C -0.547 4.547 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.786 5.786 17 Si 1.092 2.908 18 H -0.264 1.264 19 H -0.264 1.264 20 H -0.260 1.260 21 H 0.054 0.946 22 H 0.111 0.889 23 H 0.055 0.945 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.183 0.817 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 5.604 2.276 7.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.252 6.252 3 C -0.042 4.042 4 C -0.185 4.185 5 C -0.187 4.187 6 C -0.097 4.097 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.365 4.365 10 S 0.326 5.674 11 C -0.326 4.326 12 C 0.064 3.936 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.212 4.212 16 N -0.408 5.408 17 Si 0.910 3.090 18 H -0.188 1.188 19 H -0.189 1.189 20 H -0.185 1.185 21 H 0.072 0.928 22 H 0.130 0.870 23 H 0.074 0.926 24 H 0.157 0.843 25 H 0.152 0.848 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.200 0.800 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.909 4.212 2.064 4.778 hybrid contribution -3.237 1.047 0.018 3.402 sum -4.146 5.259 2.082 7.013 Atomic orbital electron populations 1.23138 0.78251 1.04400 1.01209 1.85929 1.21737 1.27478 1.90066 1.19161 0.91864 0.84327 1.08833 1.20876 0.99541 0.91733 1.06312 1.20415 0.91376 0.96967 1.09923 1.19369 0.94629 0.91286 1.04379 1.20041 0.92354 0.96071 1.02982 1.20505 1.01199 0.89713 1.02766 1.25372 0.99786 1.00533 1.10767 1.84062 1.05504 0.98808 1.79035 1.22580 0.96332 0.96204 1.17499 1.16632 0.89772 0.91685 0.95544 1.20182 1.05726 1.00515 1.31155 0.91805 1.27970 1.01431 0.98792 0.93015 1.70589 1.36400 1.19714 1.14122 0.83325 0.73460 0.75086 0.77165 1.18811 1.18881 1.18469 0.92766 0.87039 0.92632 0.84290 0.84753 0.90613 0.91078 0.89818 0.80003 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 9.81 113.37 1.11 1.90 16 2 O -0.34 -15.80 9.90 -89.68 -0.89 -16.69 16 3 C 0.01 0.31 6.71 23.04 0.15 0.46 16 4 C -0.16 -7.02 8.99 22.17 0.20 -6.82 16 5 C -0.17 -6.92 9.76 22.90 0.22 -6.70 16 6 C -0.09 -4.12 6.01 -20.34 -0.12 -4.25 16 7 C -0.10 -3.92 5.97 -18.84 -0.11 -4.03 16 8 C -0.08 -2.26 10.03 71.24 0.71 -1.54 16 9 C -0.23 -8.97 10.77 66.98 0.72 -8.25 16 10 S 0.06 2.88 19.96 -56.49 -1.13 1.76 16 11 C -0.21 -11.04 5.37 23.49 0.13 -10.91 16 12 C 0.07 3.92 5.00 -21.02 -0.11 3.82 16 13 C -0.55 -31.26 8.39 23.28 0.20 -31.07 16 14 H 0.06 3.72 7.94 -2.91 -0.02 3.70 16 15 C 0.01 0.28 3.97 85.22 0.34 0.62 16 16 N -0.79 -43.66 11.50 21.82 0.25 -43.41 16 17 Si 1.09 46.21 30.01 68.60 2.06 48.26 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H 0.05 1.57 7.52 -2.39 -0.02 1.55 16 22 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 23 H 0.06 1.59 7.79 -2.38 -0.02 1.57 16 24 H 0.14 4.79 6.27 -2.91 -0.02 4.77 16 25 H 0.13 4.56 7.60 -2.91 -0.02 4.53 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.81 7.56 -2.38 -0.02 1.79 16 28 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 29 H 0.18 5.57 8.06 -2.91 -0.02 5.54 16 30 H 0.27 16.21 7.41 -92.71 -0.69 15.52 16 Total: -1.00 -65.87 268.02 4.97 -60.89 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.23 Total: 15.96 kcal Atomic # 6 Polarization: -70.22 SS G_CDS: 3.45 Total: -66.77 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.25 Total: -43.41 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.89 Total: -16.69 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.06 Total: 48.26 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.13 Total: 1.76 kcal Total: -65.87 4.97 -60.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.358 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds