Wall clock time and date at job start Mon Mar 30 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35840 * 117.00344 * 2 1 4 4 C 1.35723 * 119.61623 * 0.02562 * 3 2 1 5 5 C 1.41112 * 120.33856 * 179.97438 * 4 3 2 6 6 C 1.40994 * 120.17525 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00061 * 330.09782 * 6 5 4 8 8 C 1.39835 * 120.00408 * 150.10033 * 6 5 4 9 9 N 1.30901 * 120.00142 * 161.68198 * 8 6 5 10 10 Si 1.86804 * 119.99536 * 341.68602 * 8 6 5 11 11 H 1.48504 * 109.47169 * 95.41152 * 10 8 6 12 12 H 1.48502 * 109.46957 * 215.41080 * 10 8 6 13 13 H 1.48498 * 109.47172 * 335.40921 * 10 8 6 14 14 C 1.40454 * 119.64952 * 0.02562 * 5 4 3 15 15 C 1.38915 * 120.07317 * 359.97438 * 14 5 4 16 16 S 1.76066 * 130.42823 * 179.97438 * 15 14 5 17 17 C 1.75479 * 91.53579 * 179.84370 * 16 15 14 18 18 C 1.32576 * 110.81421 * 0.33813 * 17 16 15 19 19 C 1.50703 * 122.05586 * 179.86045 * 18 17 16 20 20 C 1.40280 * 120.19739 * 0.02562 * 15 14 5 21 21 H 1.08999 * 109.47102 * 59.99101 * 1 2 3 22 22 H 1.08996 * 109.46973 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46356 * 299.99912 * 1 2 3 24 24 H 1.07995 * 119.82844 * 0.02562 * 4 3 2 25 25 H 0.97011 * 120.00014 * 180.02562 * 9 8 6 26 26 H 1.08000 * 119.96029 * 179.97438 * 14 5 4 27 27 H 1.08002 * 124.59370 * 180.23684 * 17 16 15 28 28 H 1.09001 * 109.47096 * 269.71004 * 19 18 17 29 29 H 1.09003 * 109.46917 * 149.71624 * 19 18 17 30 30 H 1.08996 * 109.47147 * 29.71732 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2991 2.3436 0.0005 5 6 1.9239 3.6089 0.0011 6 6 1.1448 4.7840 0.0022 7 1 0.1704 4.7864 -0.4637 8 6 1.6336 5.9465 0.6064 9 7 1.1064 7.1081 0.3128 10 14 3.0391 5.8417 1.8324 11 1 4.3247 6.0989 1.1349 12 1 2.8427 6.8566 2.8985 13 1 3.0673 4.4863 2.4384 14 6 3.3260 3.6914 0.0005 15 6 4.0916 2.5322 0.0000 16 16 5.8391 2.3181 -0.0013 17 6 5.6724 0.5712 0.0037 18 6 4.3941 0.2200 -0.0013 19 6 3.9612 -1.2236 -0.0017 20 6 3.4687 1.2753 -0.0005 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8901 24 1 0.2212 2.2767 0.0014 25 1 1.4458 7.9147 0.7316 26 1 3.8095 4.6572 0.0005 27 1 6.4993 -0.1236 0.0083 28 1 3.8561 -1.5711 -1.0294 29 1 3.0047 -1.3162 0.5127 30 1 4.7096 -1.8274 0.5114 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396195060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:42 Heat of formation + Delta-G solvation = -11.290403 kcal Electronic energy + Delta-G solvation = -15652.070793 eV Core-core repulsion = 13117.383788 eV Total energy + Delta-G solvation = -2534.687005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50829 -37.12913 -35.53737 -33.27172 -29.97195 -29.33741 -27.49395 -26.79172 -25.00832 -21.60390 -21.37686 -18.91736 -18.29182 -16.82175 -15.69018 -15.26548 -15.19640 -15.04689 -14.60376 -13.61686 -13.33038 -13.17545 -12.92396 -12.26575 -12.14049 -11.97179 -11.62113 -11.42721 -11.17329 -10.94582 -10.83777 -10.66271 -10.19612 -10.02503 -9.80940 -9.63486 -9.15390 -8.22596 -7.56637 -7.21500 -6.63919 -4.70741 1.74689 2.44967 2.49925 2.89364 2.95896 3.09774 3.17859 3.32238 3.86026 3.94627 4.29298 5.15359 5.48284 5.57524 5.58008 5.71423 5.78423 5.97282 6.12409 6.13353 6.29493 6.32247 6.46628 6.62780 6.78865 6.90476 6.94823 7.25901 7.45394 7.51040 7.65982 8.01018 8.10466 8.38985 8.54862 9.78040 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.010249 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.772841 B = 2731.436397 C = 3824.968914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.194 3.806 4 C -0.281 4.281 5 C 0.135 3.865 6 C -0.420 4.420 7 H 0.098 0.902 8 C 0.084 3.916 9 N -0.788 5.788 10 Si 0.912 3.088 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.240 1.240 14 C -0.253 4.253 15 C -0.028 4.028 16 S 0.005 5.995 17 C -0.278 4.278 18 C -0.025 4.025 19 C -0.094 4.094 20 C -0.220 4.220 21 H 0.052 0.948 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.116 0.884 25 H 0.291 0.709 26 H 0.107 0.893 27 H 0.147 0.853 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -8.762 1.000 9.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.147 3.853 4 C -0.301 4.301 5 C 0.128 3.872 6 C -0.447 4.447 7 H 0.115 0.885 8 C -0.138 4.138 9 N -0.410 5.410 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.163 1.163 14 C -0.280 4.280 15 C -0.143 4.143 16 S 0.267 5.733 17 C -0.411 4.411 18 C -0.036 4.036 19 C -0.153 4.153 20 C -0.225 4.225 21 H 0.071 0.929 22 H 0.107 0.893 23 H 0.071 0.929 24 H 0.134 0.866 25 H 0.102 0.898 26 H 0.125 0.875 27 H 0.164 0.836 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.165 -7.780 0.997 8.458 hybrid contribution -0.818 -0.478 0.428 1.040 sum 2.348 -8.258 1.425 8.703 Atomic orbital electron populations 1.22929 0.79781 1.02494 1.01493 1.85978 1.20272 1.28450 1.88845 1.18348 0.89723 0.83396 0.93802 1.20661 0.98688 0.91902 1.18856 1.17273 0.90629 0.92354 0.86942 1.19532 1.04067 0.91890 1.29253 0.88452 1.26276 0.96939 0.94128 0.96462 1.69712 1.37650 0.99361 1.34239 0.86257 0.80090 0.80259 0.79693 1.19096 1.21439 1.16293 1.20213 0.93185 0.94553 1.20054 1.21983 0.94586 0.96280 1.01474 1.83672 1.04007 1.03236 1.82402 1.24226 0.99054 0.96698 1.21115 1.18492 0.91809 0.95534 0.97790 1.20583 1.01661 0.91378 1.01665 1.16857 0.90042 0.91678 1.23950 0.92936 0.89326 0.92893 0.86600 0.89828 0.87548 0.83572 0.91959 0.90433 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.79 101.05 0.99 1.39 16 2 O -0.32 -5.94 7.81 -19.24 -0.15 -6.09 16 3 C 0.19 4.23 6.71 -38.87 -0.26 3.97 16 4 C -0.28 -6.34 8.68 -39.39 -0.34 -6.68 16 5 C 0.13 3.34 5.10 -106.93 -0.54 2.80 16 6 C -0.42 -10.77 9.54 -37.94 -0.36 -11.13 16 7 H 0.10 2.55 8.06 -52.48 -0.42 2.13 16 8 C 0.08 2.11 5.40 -17.35 -0.09 2.02 16 9 N -0.79 -19.83 13.93 55.54 0.77 -19.05 16 10 Si 0.91 20.51 24.52 -169.99 -4.17 16.35 16 11 H -0.27 -5.91 6.71 56.52 0.38 -5.53 16 12 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.24 -5.65 6.87 56.52 0.39 -5.26 16 14 C -0.25 -6.28 7.19 -38.50 -0.28 -6.56 16 15 C -0.03 -0.66 6.46 -38.56 -0.25 -0.91 16 16 S 0.01 0.11 23.29 -107.50 -2.50 -2.40 16 17 C -0.28 -5.26 10.81 28.83 0.31 -4.95 16 18 C -0.03 -0.50 5.82 -105.73 -0.62 -1.12 16 19 C -0.09 -1.52 9.56 36.01 0.34 -1.17 16 20 C -0.22 -4.99 5.88 -106.72 -0.63 -5.62 16 21 H 0.05 0.72 7.63 -51.93 -0.40 0.33 16 22 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.73 7.62 -51.93 -0.40 0.33 16 24 H 0.12 2.36 6.13 -52.49 -0.32 2.04 16 25 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 26 H 0.11 2.64 4.72 -52.49 -0.25 2.39 16 27 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.28 6.04 -51.93 -0.31 0.97 16 30 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 LS Contribution 262.13 15.07 3.95 3.95 Total: -1.00 -27.22 262.13 -6.78 -34.00 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -2.96 Total: 1.20 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -1.73 Total: -27.96 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.77 Total: -19.05 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.15 Total: -6.09 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.17 Total: 16.35 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.50 Total: -2.40 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.22 -6.78 -34.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.710 kcal (2) G-P(sol) polarization free energy of solvation -27.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds