Wall clock time and date at job start Mon Mar 30 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35543 * 116.99786 * 2 1 4 4 C 1.33673 * 124.71088 * 179.97438 * 3 2 1 5 5 C 1.39735 * 115.66747 * 180.02562 * 4 3 2 6 6 C 1.39919 * 112.78045 * 0.02562 * 5 4 3 7 7 S 1.75509 * 124.70922 * 0.02562 * 3 2 1 8 8 C 1.39319 * 120.05568 * 180.02562 * 6 5 4 9 9 C 1.50707 * 119.25483 * 179.97438 * 8 6 5 10 10 C 1.38325 * 121.49034 * 0.02562 * 8 6 5 11 11 C 1.37491 * 121.11064 * 359.97438 * 10 8 6 12 12 C 1.40405 * 120.11921 * 0.02562 * 11 10 8 13 13 C 1.40532 * 120.41525 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99430 * 154.30429 * 13 12 11 15 15 C 1.39921 * 120.00068 * 334.30648 * 13 12 11 16 16 N 1.30887 * 120.00086 * 343.30558 * 15 13 12 17 17 Si 1.86796 * 119.99580 * 163.30325 * 15 13 12 18 18 H 1.48499 * 109.47323 * 90.00014 * 17 15 13 19 19 H 1.48500 * 109.46939 * 209.99772 * 17 15 13 20 20 H 1.48496 * 109.47682 * 329.99933 * 17 15 13 21 21 H 1.09002 * 109.47068 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47672 * 300.00042 * 1 2 3 23 23 H 1.09003 * 109.47305 * 60.00822 * 1 2 3 24 24 H 1.08004 * 122.16443 * 359.97438 * 4 3 2 25 25 H 1.09001 * 109.46891 * 89.99973 * 9 8 6 26 26 H 1.09004 * 109.46566 * 209.99737 * 9 8 6 27 27 H 1.08995 * 109.47098 * 329.99796 * 9 8 6 28 28 H 1.08005 * 119.44658 * 179.97438 * 10 8 6 29 29 H 1.08003 * 119.94308 * 179.97438 * 11 10 8 30 30 H 0.96999 * 120.00146 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.3690 1.3871 0.0005 5 6 3.7997 2.7164 0.0010 6 6 2.7395 3.6295 0.0014 7 16 1.2124 2.7531 0.0006 8 6 2.9977 4.9985 0.0013 9 6 1.8421 5.9659 0.0012 10 6 4.2907 5.4900 0.0004 11 6 5.3730 4.6420 -0.0001 12 6 5.1785 3.2515 -0.0001 13 6 6.2803 2.3791 -0.0011 14 1 6.1806 1.3831 0.4044 15 6 7.5062 2.8009 -0.5275 16 7 7.5581 3.8548 -1.3019 17 14 9.0687 1.8598 -0.1247 18 1 9.2816 0.7964 -1.1392 19 1 10.2246 2.7921 -0.1350 20 1 8.9424 1.2428 1.2201 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 4.0614 0.5583 0.0013 25 1 1.5634 6.1992 1.0289 26 1 2.1349 6.8816 -0.5126 27 1 0.9923 5.5168 -0.5126 28 1 4.4528 6.5578 -0.0001 29 1 6.3745 5.0462 -0.0013 30 1 8.4080 4.1474 -1.6665 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396201063.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:40 Heat of formation + Delta-G solvation = -8.587257 kcal Electronic energy + Delta-G solvation = -15286.645325 eV Core-core repulsion = 12752.075537 eV Total energy + Delta-G solvation = -2534.569788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.48919 -37.74193 -34.29831 -33.76004 -30.83704 -28.24657 -27.58047 -26.14724 -23.94098 -22.33450 -20.60368 -19.38611 -18.08119 -16.78446 -15.50991 -15.31877 -15.27217 -14.93941 -14.04254 -13.40053 -13.18375 -13.02720 -12.55839 -12.13890 -11.98188 -11.68633 -11.63360 -11.59677 -11.13769 -10.98819 -10.79620 -10.58605 -10.21676 -9.72857 -9.55613 -9.51444 -9.14139 -8.13276 -7.12213 -7.00573 -6.67350 -4.42510 1.93769 2.27782 2.63474 2.78865 2.96045 2.99420 3.07243 3.60036 3.75486 3.85223 4.38069 5.35136 5.37690 5.44594 5.62649 5.95818 6.02397 6.33210 6.34811 6.38500 6.52198 6.60798 6.84050 6.89471 7.02520 7.18704 7.33108 7.56345 7.74116 7.85931 7.89679 8.02568 8.40147 8.59427 8.73200 9.88817 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.008139 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.969603 B = 3439.400001 C = 4580.610205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.292 6.292 3 C -0.051 4.051 4 C -0.100 4.100 5 C -0.166 4.166 6 C -0.070 4.070 7 S -0.017 6.017 8 C -0.200 4.200 9 C -0.086 4.086 10 C -0.062 4.062 11 C -0.186 4.186 12 C 0.150 3.850 13 C -0.428 4.428 14 H 0.086 0.914 15 C 0.072 3.928 16 N -0.770 5.770 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.257 1.257 21 H 0.095 0.905 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.131 0.869 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -1.429 1.506 6.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.207 6.207 3 C -0.207 4.207 4 C -0.129 4.129 5 C -0.172 4.172 6 C -0.184 4.184 7 S 0.240 5.760 8 C -0.207 4.207 9 C -0.143 4.143 10 C -0.083 4.083 11 C -0.208 4.208 12 C 0.145 3.855 13 C -0.456 4.456 14 H 0.104 0.896 15 C -0.149 4.149 16 N -0.393 5.393 17 Si 0.738 3.262 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.181 1.181 21 H 0.114 0.886 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.148 0.852 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.141 0.859 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.962 -1.167 1.348 7.187 hybrid contribution 1.850 -0.663 -0.010 1.965 sum -5.112 -1.830 1.338 5.592 Atomic orbital electron populations 1.22989 0.79406 1.03185 1.01251 1.85798 1.19872 1.23897 1.91164 1.22428 0.94478 0.86707 1.17100 1.19145 0.91660 0.97367 1.04776 1.18703 0.93583 0.89954 1.14919 1.21726 0.92474 0.96635 1.07609 1.83448 1.10608 0.98108 1.83820 1.18281 0.94239 0.89934 1.18242 1.20441 0.96202 0.97695 0.99949 1.20350 0.91669 0.97616 0.98662 1.21014 0.97886 0.92576 1.09277 1.18397 0.88365 0.92285 0.86422 1.19592 0.93442 1.00684 1.31876 0.89610 1.26067 1.01292 0.94946 0.92574 1.69852 1.28656 1.20855 1.19950 0.86181 0.79491 0.79965 0.80547 1.19098 1.19735 1.18051 0.88611 0.93095 0.93104 0.85158 0.93630 0.93106 0.93796 0.88642 0.85891 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.24 101.05 1.04 1.43 16 2 O -0.29 -5.57 10.56 -18.32 -0.19 -5.77 16 3 C -0.05 -1.09 7.18 29.13 0.21 -0.88 16 4 C -0.10 -2.36 9.79 -40.62 -0.40 -2.75 16 5 C -0.17 -4.19 6.02 -104.75 -0.63 -4.82 16 6 C -0.07 -1.66 6.28 -38.55 -0.24 -1.90 16 7 S -0.02 -0.35 21.21 -107.50 -2.28 -2.63 16 8 C -0.20 -4.51 5.91 -104.18 -0.62 -5.13 16 9 C -0.09 -1.58 9.83 36.01 0.35 -1.23 16 10 C -0.06 -1.43 9.57 -39.82 -0.38 -1.81 16 11 C -0.19 -4.68 8.65 -39.04 -0.34 -5.01 16 12 C 0.15 3.94 5.75 -104.26 -0.60 3.34 16 13 C -0.43 -10.85 8.81 -38.09 -0.34 -11.19 16 14 H 0.09 2.09 7.53 -52.49 -0.40 1.70 16 15 C 0.07 1.71 5.15 -17.32 -0.09 1.62 16 16 N -0.77 -18.67 10.96 55.55 0.61 -18.06 16 17 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.05 0.67 8.03 -51.93 -0.42 0.26 16 23 H 0.05 0.68 8.03 -51.93 -0.42 0.26 16 24 H 0.13 2.96 7.73 -52.48 -0.41 2.55 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 0.78 7.53 -51.93 -0.39 0.39 16 28 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.12 3.11 6.19 -52.48 -0.32 2.78 16 30 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 LS Contribution 272.57 15.07 4.11 4.11 Total: -1.00 -27.31 272.57 -7.99 -35.30 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.17 Total: 2.87 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -2.03 Total: -28.32 kcal Atomic # 7 Polarization: -18.67 SS G_CDS: 0.61 Total: -18.06 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.19 Total: -5.77 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.28 Total: -2.63 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.31 -7.99 -35.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396201063.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.709 kcal (2) G-P(sol) polarization free energy of solvation -27.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds