Wall clock time and date at job start Mon Mar 30 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35543 * 116.99786 * 2 1 4 4 C 1.33673 * 124.71088 * 179.97438 * 3 2 1 5 5 C 1.39735 * 115.66747 * 180.02562 * 4 3 2 6 6 C 1.39919 * 112.78045 * 0.02562 * 5 4 3 7 7 S 1.75509 * 124.70922 * 0.02562 * 3 2 1 8 8 C 1.39319 * 120.05568 * 180.02562 * 6 5 4 9 9 C 1.50707 * 119.25483 * 179.97438 * 8 6 5 10 10 C 1.38325 * 121.49034 * 0.02562 * 8 6 5 11 11 C 1.37491 * 121.11064 * 359.97438 * 10 8 6 12 12 C 1.40405 * 120.11921 * 0.02562 * 11 10 8 13 13 C 1.40532 * 120.41525 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99430 * 154.30429 * 13 12 11 15 15 C 1.39921 * 120.00068 * 334.30648 * 13 12 11 16 16 N 1.30887 * 120.00086 * 343.30558 * 15 13 12 17 17 Si 1.86796 * 119.99580 * 163.30325 * 15 13 12 18 18 H 1.48499 * 109.47323 * 90.00014 * 17 15 13 19 19 H 1.48500 * 109.46939 * 209.99772 * 17 15 13 20 20 H 1.48496 * 109.47682 * 329.99933 * 17 15 13 21 21 H 1.09002 * 109.47068 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47672 * 300.00042 * 1 2 3 23 23 H 1.09003 * 109.47305 * 60.00822 * 1 2 3 24 24 H 1.08004 * 122.16443 * 359.97438 * 4 3 2 25 25 H 1.09001 * 109.46891 * 89.99973 * 9 8 6 26 26 H 1.09004 * 109.46566 * 209.99737 * 9 8 6 27 27 H 1.08995 * 109.47098 * 329.99796 * 9 8 6 28 28 H 1.08005 * 119.44658 * 179.97438 * 10 8 6 29 29 H 1.08003 * 119.94308 * 179.97438 * 11 10 8 30 30 H 0.96999 * 120.00146 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.3690 1.3871 0.0005 5 6 3.7997 2.7164 0.0010 6 6 2.7395 3.6295 0.0014 7 16 1.2124 2.7531 0.0006 8 6 2.9977 4.9985 0.0013 9 6 1.8421 5.9659 0.0012 10 6 4.2907 5.4900 0.0004 11 6 5.3730 4.6420 -0.0001 12 6 5.1785 3.2515 -0.0001 13 6 6.2803 2.3791 -0.0011 14 1 6.1806 1.3831 0.4044 15 6 7.5062 2.8009 -0.5275 16 7 7.5581 3.8548 -1.3019 17 14 9.0687 1.8598 -0.1247 18 1 9.2816 0.7964 -1.1392 19 1 10.2246 2.7921 -0.1350 20 1 8.9424 1.2428 1.2201 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 4.0614 0.5583 0.0013 25 1 1.5634 6.1992 1.0289 26 1 2.1349 6.8816 -0.5126 27 1 0.9923 5.5168 -0.5126 28 1 4.4528 6.5578 -0.0001 29 1 6.3745 5.0462 -0.0013 30 1 8.4080 4.1474 -1.6665 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396201063.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:39 Heat of formation + Delta-G solvation = -22.704643 kcal Electronic energy + Delta-G solvation = -15287.257500 eV Core-core repulsion = 12752.075537 eV Total energy + Delta-G solvation = -2535.181963 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14894 -39.39335 -36.07240 -35.47217 -32.58973 -29.90038 -29.19474 -27.55934 -25.67152 -24.08429 -22.34387 -21.14014 -19.81211 -18.45379 -17.18589 -16.91266 -16.72451 -16.62048 -15.74288 -15.02593 -14.83639 -14.62104 -14.21086 -13.72916 -13.51395 -13.30082 -13.22917 -13.00575 -12.76192 -12.57401 -12.33959 -12.11954 -11.91569 -11.50251 -11.28723 -11.23960 -10.87024 -9.89144 -8.87408 -8.75195 -8.43576 -6.27783 0.14958 0.57260 0.86834 1.02917 1.37258 1.46202 1.53260 1.77720 2.15866 2.39813 2.60045 3.57838 4.29390 4.30676 4.32889 4.40364 4.57867 4.67795 4.70410 4.82447 4.93148 5.04208 5.06630 5.13075 5.30354 5.37597 5.53758 5.83557 5.95457 6.09603 6.15598 6.23936 6.56854 6.75669 6.89565 8.17471 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.008139 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.969603 B = 3439.400001 C = 4580.610205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.303 6.303 3 C -0.030 4.030 4 C -0.143 4.143 5 C -0.184 4.184 6 C -0.109 4.109 7 S 0.055 5.945 8 C -0.201 4.201 9 C -0.082 4.082 10 C -0.070 4.070 11 C -0.209 4.209 12 C 0.115 3.885 13 C -0.465 4.465 14 H 0.079 0.921 15 C 0.036 3.964 16 N -0.802 5.802 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.259 1.259 20 H -0.258 1.258 21 H 0.134 0.866 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.123 0.877 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 -1.534 1.651 7.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.218 6.218 3 C -0.188 4.188 4 C -0.173 4.173 5 C -0.190 4.190 6 C -0.223 4.223 7 S 0.312 5.688 8 C -0.208 4.208 9 C -0.139 4.139 10 C -0.091 4.091 11 C -0.230 4.230 12 C 0.111 3.889 13 C -0.492 4.492 14 H 0.097 0.903 15 C -0.182 4.182 16 N -0.426 5.426 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.183 1.183 20 H -0.182 1.182 21 H 0.152 0.848 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.141 0.859 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.738 -1.266 1.491 8.954 hybrid contribution 2.095 -0.694 -0.059 2.207 sum -6.643 -1.960 1.431 7.073 Atomic orbital electron populations 1.23452 0.76263 1.06203 1.02116 1.85814 1.22981 1.22612 1.90430 1.22687 0.94479 0.88413 1.13231 1.19162 0.92906 0.96878 1.08346 1.19000 0.93995 0.91176 1.14850 1.22188 0.94355 0.97437 1.08352 1.83012 1.07326 0.95668 1.82753 1.18814 0.95468 0.90516 1.15999 1.20475 0.94604 0.97406 1.01432 1.20661 0.91540 0.98757 0.98115 1.21021 0.98177 0.92761 1.11069 1.18776 0.89376 0.93127 0.87648 1.19758 0.94850 1.00752 1.33869 0.90278 1.26867 1.03773 0.95794 0.91746 1.69879 1.29897 1.22191 1.20637 0.85133 0.75543 0.78711 0.80033 1.18561 1.18303 1.18193 0.84773 0.92054 0.92214 0.85884 0.91927 0.91117 0.93061 0.86005 0.87055 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.24 113.37 1.16 1.53 16 2 O -0.30 -10.95 10.56 -88.48 -0.93 -11.88 16 3 C -0.03 -1.28 7.18 66.78 0.48 -0.80 16 4 C -0.14 -6.94 9.79 21.60 0.21 -6.72 16 5 C -0.18 -9.60 6.02 -19.95 -0.12 -9.72 16 6 C -0.11 -5.13 6.28 22.94 0.14 -4.98 16 7 S 0.05 2.11 21.21 -56.49 -1.20 0.91 16 8 C -0.20 -8.88 5.91 -19.58 -0.12 -9.00 16 9 C -0.08 -2.79 9.83 71.24 0.70 -2.09 16 10 C -0.07 -3.23 9.57 22.11 0.21 -3.02 16 11 C -0.21 -10.92 8.65 22.62 0.20 -10.72 16 12 C 0.12 6.35 5.75 -19.63 -0.11 6.24 16 13 C -0.46 -24.88 8.81 23.24 0.20 -24.68 16 14 H 0.08 4.13 7.53 -2.91 -0.02 4.11 16 15 C 0.04 1.77 5.15 85.24 0.44 2.21 16 16 N -0.80 -40.32 10.96 21.83 0.24 -40.08 16 17 Si 0.99 36.82 29.59 68.60 2.03 38.85 16 18 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 19 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 21 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 22 H 0.06 1.39 8.03 -2.39 -0.02 1.37 16 23 H 0.06 1.37 8.03 -2.39 -0.02 1.35 16 24 H 0.12 5.92 7.73 -2.91 -0.02 5.90 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 27 H 0.05 1.65 7.53 -2.39 -0.02 1.63 16 28 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.11 5.93 6.19 -2.91 -0.02 5.91 16 30 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 Total: -1.00 -60.84 272.57 4.69 -56.15 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 1.15 Total: 17.80 kcal Atomic # 6 Polarization: -65.15 SS G_CDS: 3.40 Total: -61.75 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.24 Total: -40.08 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.93 Total: -11.88 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.20 Total: 0.91 kcal Total: -60.84 4.69 -56.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396201063.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.448 kcal (2) G-P(sol) polarization free energy of solvation -60.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds