Wall clock time and date at job start Mon Mar 30 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35699 * 116.99885 * 2 1 4 4 C 1.38804 * 119.34652 * 359.97438 * 3 2 1 5 5 C 1.37429 * 120.99256 * 179.97438 * 4 3 2 6 6 C 1.40412 * 120.20759 * 0.02562 * 5 4 3 7 7 C 1.40474 * 120.33512 * 180.02562 * 6 5 4 8 8 H 1.08006 * 120.00459 * 138.28055 * 7 6 5 9 9 C 1.39908 * 120.00109 * 318.27527 * 7 6 5 10 10 N 1.30920 * 119.99855 * 181.96005 * 9 7 6 11 11 Si 1.86797 * 119.99747 * 1.96310 * 9 7 6 12 12 H 1.48500 * 109.47250 * 84.25652 * 11 9 7 13 13 H 1.48504 * 109.47006 * 204.25388 * 11 9 7 14 14 H 1.48495 * 109.47357 * 324.25267 * 11 9 7 15 15 C 1.47945 * 119.33300 * 359.75667 * 6 5 4 16 16 C 1.40061 * 129.16794 * 179.63015 * 15 6 5 17 17 C 1.50699 * 122.10004 * 0.62307 * 16 15 6 18 18 C 1.32668 * 115.79898 * 180.35372 * 16 15 6 19 19 S 1.75517 * 110.63412 * 0.26993 * 18 16 15 20 20 C 1.39468 * 118.11233 * 0.50822 * 15 6 5 21 21 H 1.09001 * 109.46585 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47007 * 299.99440 * 1 2 3 23 23 H 1.08997 * 109.47291 * 60.00284 * 1 2 3 24 24 H 1.08002 * 119.50821 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.90147 * 179.97438 * 5 4 3 26 26 H 0.97002 * 119.99916 * 180.02562 * 10 9 7 27 27 H 1.08997 * 109.46791 * 277.25794 * 17 16 15 28 28 H 1.09004 * 109.47246 * 157.26233 * 17 16 15 29 29 H 1.08997 * 109.47008 * 37.26314 * 17 16 15 30 30 H 1.08002 * 124.68428 * 180.24844 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2758 2.3645 -0.0005 5 6 1.8642 3.6064 0.0000 6 6 3.2633 3.7253 0.0005 7 6 3.8676 4.9934 0.0016 8 1 4.7300 5.1802 0.6244 9 6 3.3525 6.0145 -0.8043 10 7 3.9386 7.1848 -0.8324 11 14 1.8285 5.7079 -1.8400 12 1 0.6152 5.9228 -1.0111 13 1 1.8147 6.6468 -2.9904 14 1 1.8439 4.3104 -2.3419 15 6 4.0946 2.5015 0.0060 16 6 5.4899 2.3798 0.0005 17 6 6.3986 3.5821 0.0010 18 6 5.9614 1.1398 0.0004 19 16 4.6459 -0.0221 -0.0003 20 6 3.4463 1.2666 -0.0004 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.1986 2.2864 -0.0005 25 1 1.2487 4.4939 -0.0009 26 1 3.5812 7.8929 -1.3909 27 1 6.5103 3.9534 -1.0176 28 1 7.3753 3.2992 0.3937 29 1 5.9674 4.3630 0.6273 30 1 7.0099 0.8809 0.0004 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396202050.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:19 Heat of formation + Delta-G solvation = -12.206660 kcal Electronic energy + Delta-G solvation = -15723.932390 eV Core-core repulsion = 13189.205653 eV Total energy + Delta-G solvation = -2534.726737 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79509 -39.07377 -36.38927 -35.15977 -32.24042 -30.68662 -29.04930 -27.80432 -26.25616 -23.84208 -22.80003 -20.46127 -19.84592 -18.59860 -17.50227 -16.80359 -16.54807 -16.47554 -16.18264 -15.35785 -14.98941 -14.62607 -14.33958 -13.85940 -13.60175 -13.48047 -13.21229 -13.13126 -12.67675 -12.53795 -12.18548 -12.13421 -11.95739 -11.60062 -11.32780 -11.09404 -10.91804 -9.71506 -9.24667 -8.84455 -8.28095 -6.35976 -0.08064 0.62663 0.84763 1.25833 1.28890 1.33642 1.46125 1.64337 2.11938 2.53783 2.63636 3.25206 4.04097 4.11106 4.29858 4.40879 4.45425 4.49852 4.57067 4.73525 4.79632 4.85447 4.93842 5.11387 5.16148 5.27315 5.43805 5.50096 5.67003 5.85368 5.98943 6.32739 6.49694 6.73133 6.79412 8.21568 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.019870 B = 0.011401 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.786394 B = 2455.347412 C = 3694.766404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.340 6.340 3 C 0.034 3.966 4 C -0.136 4.136 5 C -0.235 4.235 6 C 0.093 3.907 7 C -0.459 4.459 8 H 0.088 0.912 9 C 0.051 3.949 10 N -0.848 5.848 11 Si 0.953 3.047 12 H -0.253 1.253 13 H -0.284 1.284 14 H -0.258 1.258 15 C -0.144 4.144 16 C -0.068 4.068 17 C -0.091 4.091 18 C -0.241 4.241 19 S 0.074 5.926 20 C -0.137 4.137 21 H 0.120 0.880 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.143 0.857 25 H 0.114 0.886 26 H 0.293 0.707 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -9.001 -0.195 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.256 6.256 3 C -0.015 4.015 4 C -0.157 4.157 5 C -0.257 4.257 6 C 0.088 3.912 7 C -0.488 4.488 8 H 0.106 0.894 9 C -0.164 4.164 10 N -0.475 5.475 11 Si 0.778 3.222 12 H -0.178 1.178 13 H -0.211 1.211 14 H -0.182 1.182 15 C -0.151 4.151 16 C -0.079 4.079 17 C -0.149 4.149 18 C -0.374 4.374 19 S 0.337 5.663 20 C -0.252 4.252 21 H 0.138 0.862 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.161 0.839 25 H 0.132 0.868 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.013 -10.535 -0.259 10.960 hybrid contribution -0.695 2.038 -0.382 2.187 sum -3.708 -8.496 -0.641 9.292 Atomic orbital electron populations 1.23189 0.77413 1.04936 1.01528 1.85859 1.22622 1.26572 1.90528 1.17781 0.88817 0.84786 1.10120 1.20840 0.99619 0.91300 1.03988 1.20819 0.94212 0.96747 1.13937 1.18698 0.91176 0.91340 0.89940 1.19450 1.13907 0.93026 1.22421 0.89410 1.26621 0.99296 0.93505 0.96938 1.69645 1.39182 1.03684 1.34975 0.85706 0.79243 0.79084 0.78170 1.17792 1.21073 1.18205 1.19354 0.93048 0.92089 1.10653 1.18776 0.92590 0.96221 1.00314 1.20732 0.97236 0.94701 1.02279 1.25123 1.03048 0.94462 1.14732 1.83403 0.94872 1.08049 1.79927 1.22018 0.95126 0.97227 1.10872 0.86209 0.92450 0.92726 0.83915 0.86800 0.89641 0.92226 0.90237 0.91347 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.79 113.37 1.11 1.71 16 2 O -0.34 -12.50 10.45 -90.19 -0.94 -13.45 16 3 C 0.03 1.45 6.72 22.90 0.15 1.61 16 4 C -0.14 -5.61 8.94 22.21 0.20 -5.41 16 5 C -0.24 -10.89 6.84 22.61 0.15 -10.73 16 6 C 0.09 4.68 5.23 -19.63 -0.10 4.58 16 7 C -0.46 -24.08 8.27 23.22 0.19 -23.89 16 8 H 0.09 4.82 5.26 -2.91 -0.02 4.81 16 9 C 0.05 2.59 5.52 85.23 0.47 3.06 16 10 N -0.85 -44.27 13.93 21.83 0.30 -43.97 16 11 Si 0.95 41.42 24.47 68.60 1.68 43.10 16 12 H -0.25 -10.23 6.65 99.48 0.66 -9.56 16 13 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 14 H -0.26 -11.71 6.58 99.48 0.65 -11.06 16 15 C -0.14 -6.85 6.01 -19.97 -0.12 -6.97 16 16 C -0.07 -2.85 5.81 -20.59 -0.12 -2.97 16 17 C -0.09 -3.54 9.13 71.24 0.65 -2.89 16 18 C -0.24 -8.67 10.81 66.65 0.72 -7.95 16 19 S 0.07 2.74 23.26 -56.49 -1.31 1.43 16 20 C -0.14 -6.15 6.43 23.06 0.15 -6.00 16 21 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 22 H 0.06 1.34 7.62 -2.39 -0.02 1.32 16 23 H 0.05 1.30 7.61 -2.39 -0.02 1.28 16 24 H 0.14 4.75 6.14 -2.91 -0.02 4.74 16 25 H 0.11 5.09 4.66 -2.91 -0.01 5.07 16 26 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.48 8.07 -2.38 -0.02 2.46 16 29 H 0.07 2.99 4.89 -2.39 -0.01 2.98 16 30 H 0.19 5.26 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -59.06 258.85 4.26 -54.80 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.08 Total: 13.93 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 3.46 Total: -55.85 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.30 Total: -43.97 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.94 Total: -13.45 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.68 Total: 43.10 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.31 Total: 1.43 kcal Total: -59.06 4.26 -54.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202050.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.597 kcal (2) G-P(sol) polarization free energy of solvation -59.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds