Wall clock time and date at job start Mon Mar 30 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35519 * 116.99749 * 2 1 4 4 C 1.33525 * 124.62788 * 179.97438 * 3 2 1 5 5 C 1.40167 * 115.72833 * 179.97438 * 4 3 2 6 6 C 1.42115 * 128.53417 * 180.02562 * 5 4 3 7 7 C 1.35182 * 120.84786 * 179.97438 * 6 5 4 8 8 C 1.41275 * 120.36827 * 0.29362 * 7 6 5 9 9 C 1.40922 * 120.19368 * 179.70325 * 8 7 6 10 10 H 1.07998 * 119.99681 * 149.10021 * 9 8 7 11 11 C 1.39786 * 119.99761 * 329.10311 * 9 8 7 12 12 N 1.30952 * 119.99404 * 162.48995 * 11 9 8 13 13 Si 1.86797 * 120.00128 * 342.49117 * 11 9 8 14 14 H 1.48497 * 109.47159 * 95.38089 * 13 11 9 15 15 H 1.48507 * 109.46938 * 215.37599 * 13 11 9 16 16 H 1.48499 * 109.47089 * 335.37388 * 13 11 9 17 17 C 1.40465 * 119.60596 * 359.48686 * 8 7 6 18 18 C 1.50708 * 119.99198 * 180.24777 * 17 8 7 19 19 C 1.38647 * 120.01819 * 0.45767 * 17 8 7 20 20 S 1.75461 * 124.63286 * 359.97076 * 3 2 1 21 21 H 1.09003 * 109.46889 * 59.99916 * 1 2 3 22 22 H 1.08993 * 109.46986 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47406 * 300.00229 * 1 2 3 24 24 H 1.08002 * 122.13445 * 0.02562 * 4 3 2 25 25 H 1.07998 * 119.57845 * 0.02562 * 6 5 4 26 26 H 1.07991 * 119.81387 * 180.02562 * 7 6 5 27 27 H 0.97008 * 119.99802 * 179.97438 * 12 11 9 28 28 H 1.08993 * 109.46896 * 270.21274 * 18 17 8 29 29 H 1.08998 * 109.46731 * 30.20703 * 18 17 8 30 30 H 1.09002 * 109.47234 * 150.20699 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.3676 1.3848 0.0005 5 6 3.8030 2.7171 -0.0002 6 6 5.1347 3.2133 -0.0004 7 6 5.3790 4.5429 -0.0016 8 6 4.3093 5.4656 0.0036 9 6 4.5682 6.8509 0.0087 10 1 3.8778 7.5310 -0.4680 11 6 5.7186 7.3446 0.6306 12 7 6.1448 8.5518 0.3553 13 14 6.6480 6.2822 1.8541 14 1 7.7609 5.5860 1.1600 15 1 7.1979 7.1386 2.9356 16 1 5.7240 5.2778 2.4395 17 6 2.9861 4.9942 -0.0009 18 6 1.8383 5.9708 -0.0011 19 6 2.7357 3.6305 -0.0008 20 16 1.2105 2.7514 -0.0007 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 4.0584 0.5546 0.0005 25 1 5.9622 2.5194 -0.0004 26 1 6.3976 4.9016 -0.0021 27 1 6.9429 8.8946 0.7871 28 1 1.5616 6.2064 1.0265 29 1 2.1385 6.8840 -0.5149 30 1 0.9849 5.5285 -0.5150 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396202208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:44 Heat of formation + Delta-G solvation = -6.877246 kcal Electronic energy + Delta-G solvation = -15317.895388 eV Core-core repulsion = 12783.399752 eV Total energy + Delta-G solvation = -2534.495636 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.84766 -38.17324 -34.89462 -33.03003 -31.60677 -29.28223 -27.20314 -26.09473 -24.48369 -22.45109 -20.73467 -19.76373 -17.96903 -17.20449 -15.97957 -15.51718 -15.29954 -14.95259 -14.40170 -13.66499 -13.28018 -13.19077 -12.76615 -12.30189 -12.05551 -11.93588 -11.91006 -11.47302 -11.25013 -11.04761 -10.94400 -10.59151 -10.22492 -9.98160 -9.66566 -9.46327 -9.14706 -8.48347 -7.31015 -7.15220 -6.89127 -4.55342 1.69371 2.06133 2.41743 2.59651 2.90762 3.06253 3.17157 3.31596 3.64180 3.83437 4.34693 5.15804 5.20578 5.24969 5.49669 5.71627 6.01746 6.05875 6.20609 6.37837 6.45918 6.53940 6.63634 6.64732 6.82254 6.87859 7.26093 7.30971 7.45637 7.58584 7.62812 7.83843 8.13404 8.43847 8.57177 9.85086 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.006910 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.864865 B = 4051.129304 C = 4540.017433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.293 6.293 3 C -0.036 4.036 4 C -0.120 4.120 5 C -0.181 4.181 6 C -0.046 4.046 7 C -0.206 4.206 8 C 0.106 3.894 9 C -0.423 4.423 10 H 0.100 0.900 11 C 0.083 3.917 12 N -0.794 5.794 13 Si 0.908 3.092 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.241 1.241 17 C -0.167 4.167 18 C -0.085 4.085 19 C -0.063 4.063 20 S -0.003 6.003 21 H 0.053 0.947 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.128 0.872 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.289 0.711 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -8.425 0.862 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C -0.193 4.193 4 C -0.150 4.150 5 C -0.187 4.187 6 C -0.066 4.066 7 C -0.225 4.225 8 C 0.100 3.900 9 C -0.451 4.451 10 H 0.118 0.882 11 C -0.138 4.138 12 N -0.417 5.417 13 Si 0.734 3.266 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.164 1.164 17 C -0.176 4.176 18 C -0.142 4.142 19 C -0.177 4.177 20 S 0.254 5.746 21 H 0.071 0.929 22 H 0.116 0.884 23 H 0.071 0.929 24 H 0.146 0.854 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.679 -8.050 0.869 10.496 hybrid contribution 1.752 -0.633 0.481 1.924 sum -4.928 -8.683 1.350 10.074 Atomic orbital electron populations 1.23038 0.78983 1.03442 1.01525 1.85795 1.20259 1.23823 1.90894 1.22477 0.94661 0.87175 1.15004 1.19171 0.92121 0.96692 1.06980 1.17309 0.93443 0.90328 1.17573 1.20242 0.93448 0.94994 0.97943 1.20717 0.98384 0.93117 1.10267 1.17428 0.89894 0.93329 0.89327 1.19490 1.05079 0.91685 1.28848 0.88200 1.26216 0.95697 0.95425 0.96506 1.69730 1.20403 1.16944 1.34613 0.86351 0.80209 0.80246 0.79803 1.19251 1.21336 1.16429 1.18947 0.94603 0.89535 1.14466 1.20417 0.94765 0.98415 1.00599 1.21839 0.92795 0.96747 1.06344 1.83697 1.09950 0.97191 1.83753 0.92861 0.88405 0.92856 0.85440 0.87984 0.87373 0.90028 0.93019 0.91465 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.24 101.05 1.03 1.36 16 2 O -0.29 -4.95 10.55 -18.25 -0.19 -5.15 16 3 C -0.04 -0.70 7.16 29.08 0.21 -0.49 16 4 C -0.12 -2.41 10.16 -40.51 -0.41 -2.82 16 5 C -0.18 -4.00 5.88 -106.84 -0.63 -4.63 16 6 C -0.05 -1.00 9.99 -39.18 -0.39 -1.39 16 7 C -0.21 -4.76 7.03 -39.52 -0.28 -5.03 16 8 C 0.11 2.59 5.07 -106.89 -0.54 2.05 16 9 C -0.42 -10.66 8.87 -37.99 -0.34 -11.00 16 10 H 0.10 2.60 6.53 -52.49 -0.34 2.26 16 11 C 0.08 2.02 5.40 -17.35 -0.09 1.93 16 12 N -0.79 -19.78 13.93 55.54 0.77 -19.00 16 13 Si 0.91 19.57 24.51 -169.99 -4.17 15.40 16 14 H -0.27 -5.52 6.72 56.52 0.38 -5.14 16 15 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.24 -5.42 6.85 56.52 0.39 -5.03 16 17 C -0.17 -3.88 5.96 -103.63 -0.62 -4.49 16 18 C -0.09 -1.73 9.47 36.01 0.34 -1.39 16 19 C -0.06 -1.40 6.28 -38.59 -0.24 -1.65 16 20 S 0.00 -0.06 21.23 -107.50 -2.28 -2.34 16 21 H 0.05 0.63 8.02 -51.93 -0.42 0.21 16 22 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.63 8.03 -51.93 -0.42 0.21 16 24 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 25 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 26 H 0.11 2.42 4.80 -52.49 -0.25 2.17 16 27 H 0.29 6.50 8.30 -40.82 -0.34 6.17 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.37 6.30 -51.93 -0.33 1.04 16 30 H 0.04 0.72 7.58 -51.93 -0.39 0.33 16 LS Contribution 264.39 15.07 3.98 3.98 Total: -1.00 -26.75 264.39 -6.85 -33.60 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.01 Total: 1.05 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -1.96 Total: -27.55 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.77 Total: -19.00 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.19 Total: -5.15 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.17 Total: 15.40 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.28 Total: -2.34 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.75 -6.85 -33.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.726 kcal (2) G-P(sol) polarization free energy of solvation -26.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds