Wall clock time and date at job start Mon Mar 30 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35519 * 116.99749 * 2 1 4 4 C 1.33525 * 124.62788 * 179.97438 * 3 2 1 5 5 C 1.40167 * 115.72833 * 179.97438 * 4 3 2 6 6 C 1.42115 * 128.53417 * 180.02562 * 5 4 3 7 7 C 1.35182 * 120.84786 * 179.97438 * 6 5 4 8 8 C 1.41275 * 120.36827 * 0.29362 * 7 6 5 9 9 C 1.40922 * 120.19368 * 179.70325 * 8 7 6 10 10 H 1.07998 * 119.99681 * 149.10021 * 9 8 7 11 11 C 1.39786 * 119.99761 * 329.10311 * 9 8 7 12 12 N 1.30952 * 119.99404 * 162.48995 * 11 9 8 13 13 Si 1.86797 * 120.00128 * 342.49117 * 11 9 8 14 14 H 1.48497 * 109.47159 * 95.38089 * 13 11 9 15 15 H 1.48507 * 109.46938 * 215.37599 * 13 11 9 16 16 H 1.48499 * 109.47089 * 335.37388 * 13 11 9 17 17 C 1.40465 * 119.60596 * 359.48686 * 8 7 6 18 18 C 1.50708 * 119.99198 * 180.24777 * 17 8 7 19 19 C 1.38647 * 120.01819 * 0.45767 * 17 8 7 20 20 S 1.75461 * 124.63286 * 359.97076 * 3 2 1 21 21 H 1.09003 * 109.46889 * 59.99916 * 1 2 3 22 22 H 1.08993 * 109.46986 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47406 * 300.00229 * 1 2 3 24 24 H 1.08002 * 122.13445 * 0.02562 * 4 3 2 25 25 H 1.07998 * 119.57845 * 0.02562 * 6 5 4 26 26 H 1.07991 * 119.81387 * 180.02562 * 7 6 5 27 27 H 0.97008 * 119.99802 * 179.97438 * 12 11 9 28 28 H 1.08993 * 109.46896 * 270.21274 * 18 17 8 29 29 H 1.08998 * 109.46731 * 30.20703 * 18 17 8 30 30 H 1.09002 * 109.47234 * 150.20699 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.3676 1.3848 0.0005 5 6 3.8030 2.7171 -0.0002 6 6 5.1347 3.2133 -0.0004 7 6 5.3790 4.5429 -0.0016 8 6 4.3093 5.4656 0.0036 9 6 4.5682 6.8509 0.0087 10 1 3.8778 7.5310 -0.4680 11 6 5.7186 7.3446 0.6306 12 7 6.1448 8.5518 0.3553 13 14 6.6480 6.2822 1.8541 14 1 7.7609 5.5860 1.1600 15 1 7.1979 7.1386 2.9356 16 1 5.7240 5.2778 2.4395 17 6 2.9861 4.9942 -0.0009 18 6 1.8383 5.9708 -0.0011 19 6 2.7357 3.6305 -0.0008 20 16 1.2105 2.7514 -0.0007 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 4.0584 0.5546 0.0005 25 1 5.9622 2.5194 -0.0004 26 1 6.3976 4.9016 -0.0021 27 1 6.9429 8.8946 0.7871 28 1 1.5616 6.2064 1.0265 29 1 2.1385 6.8840 -0.5149 30 1 0.9849 5.5285 -0.5150 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396202208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:44 Heat of formation + Delta-G solvation = -21.588453 kcal Electronic energy + Delta-G solvation = -15318.533314 eV Core-core repulsion = 12783.399752 eV Total energy + Delta-G solvation = -2535.133562 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44589 -39.64004 -36.56869 -34.76101 -33.30711 -30.92583 -28.51684 -27.64484 -26.12676 -24.15684 -22.33523 -21.42654 -19.65397 -18.72879 -17.64166 -16.81881 -16.75912 -16.61558 -16.03743 -15.28203 -14.88287 -14.81802 -14.46671 -13.87956 -13.61209 -13.50327 -13.15383 -13.08700 -12.91011 -12.69938 -12.47298 -12.18323 -11.88627 -11.61671 -11.40058 -11.12500 -10.82934 -10.13257 -8.96430 -8.94545 -8.52222 -6.39861 0.04524 0.49678 0.65613 0.97003 1.21620 1.33129 1.47172 1.62488 2.10368 2.35175 2.58080 3.36076 4.07549 4.28413 4.30433 4.32116 4.44592 4.60271 4.66943 4.73482 4.80222 4.90333 4.97712 5.02382 5.15565 5.17411 5.55543 5.68809 5.76230 5.82995 6.08806 6.13835 6.28207 6.65349 6.75089 8.11793 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.006910 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.864865 B = 4051.129304 C = 4540.017433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.298 6.298 3 C -0.014 4.014 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.054 4.054 7 C -0.215 4.215 8 C 0.086 3.914 9 C -0.457 4.457 10 H 0.073 0.927 11 C 0.053 3.947 12 N -0.835 5.835 13 Si 0.955 3.045 14 H -0.252 1.252 15 H -0.275 1.275 16 H -0.257 1.257 17 C -0.181 4.181 18 C -0.080 4.080 19 C -0.100 4.100 20 S 0.045 5.955 21 H 0.060 0.940 22 H 0.135 0.865 23 H 0.060 0.940 24 H 0.149 0.851 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.297 0.703 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 -11.462 1.279 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.213 6.213 3 C -0.172 4.172 4 C -0.179 4.179 5 C -0.180 4.180 6 C -0.074 4.074 7 C -0.235 4.235 8 C 0.080 3.920 9 C -0.486 4.486 10 H 0.091 0.909 11 C -0.164 4.164 12 N -0.460 5.460 13 Si 0.779 3.221 14 H -0.177 1.177 15 H -0.201 1.201 16 H -0.181 1.181 17 C -0.188 4.188 18 C -0.137 4.137 19 C -0.214 4.214 20 S 0.302 5.698 21 H 0.078 0.922 22 H 0.153 0.847 23 H 0.078 0.922 24 H 0.166 0.834 25 H 0.152 0.848 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.740 -11.086 1.278 13.581 hybrid contribution 1.759 -0.043 0.294 1.784 sum -5.981 -11.130 1.573 12.732 Atomic orbital electron populations 1.23464 0.76238 1.06305 1.02141 1.85823 1.22930 1.22371 1.90165 1.22773 0.94862 0.88135 1.11477 1.19305 0.93166 0.96389 1.09085 1.17731 0.93663 0.91405 1.15247 1.20581 0.94580 0.94952 0.97261 1.20847 0.98286 0.93759 1.10599 1.17607 0.91067 0.93215 0.90073 1.19393 1.05863 0.91994 1.31331 0.90859 1.26745 0.96085 0.96240 0.97306 1.69749 1.21665 1.18211 1.36378 0.85641 0.79290 0.78813 0.78402 1.17674 1.20134 1.18081 1.19272 0.94966 0.90684 1.13927 1.20385 0.94565 0.97672 1.01072 1.22189 0.95273 0.96878 1.07077 1.83479 1.07370 0.96163 1.82759 0.92175 0.84662 0.92183 0.83359 0.84810 0.87071 0.89269 0.92393 0.92462 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 10.24 113.37 1.16 1.44 16 2 O -0.30 -8.81 10.55 -88.22 -0.93 -9.74 16 3 C -0.01 -0.50 7.16 66.75 0.48 -0.02 16 4 C -0.15 -5.56 10.16 21.67 0.22 -5.34 16 5 C -0.17 -7.37 5.88 -21.30 -0.13 -7.49 16 6 C -0.05 -2.25 9.99 22.53 0.23 -2.03 16 7 C -0.22 -9.93 7.03 22.31 0.16 -9.78 16 8 C 0.09 4.28 5.07 -21.33 -0.11 4.17 16 9 C -0.46 -24.17 8.87 23.30 0.21 -23.96 16 10 H 0.07 4.11 6.53 -2.91 -0.02 4.09 16 11 C 0.05 2.68 5.40 85.20 0.46 3.14 16 12 N -0.83 -43.25 13.93 21.80 0.30 -42.95 16 13 Si 0.96 40.65 24.51 68.60 1.68 42.33 16 14 H -0.25 -9.98 6.72 99.48 0.67 -9.31 16 15 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 16 H -0.26 -11.45 6.85 99.48 0.68 -10.77 16 17 C -0.18 -8.41 5.96 -19.22 -0.11 -8.52 16 18 C -0.08 -3.29 9.47 71.24 0.67 -2.61 16 19 C -0.10 -4.32 6.28 22.91 0.14 -4.17 16 20 S 0.04 1.56 21.23 -56.49 -1.20 0.36 16 21 H 0.06 1.15 8.02 -2.39 -0.02 1.13 16 22 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.15 8.03 -2.39 -0.02 1.13 16 24 H 0.15 4.81 8.06 -2.91 -0.02 4.78 16 25 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 26 H 0.11 4.95 4.80 -2.92 -0.01 4.94 16 27 H 0.30 13.78 8.30 -92.70 -0.77 13.01 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.43 6.30 -2.39 -0.02 2.42 16 30 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 Total: -1.00 -57.79 264.39 4.33 -53.46 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.10 Total: 11.70 kcal Atomic # 6 Polarization: -58.54 SS G_CDS: 3.38 Total: -55.17 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.30 Total: -42.95 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.93 Total: -9.74 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.68 Total: 42.33 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.20 Total: 0.36 kcal Total: -57.79 4.33 -53.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.873 kcal (2) G-P(sol) polarization free energy of solvation -57.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds