Wall clock time and date at job start Mon Mar 30 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35716 * 116.99721 * 2 1 4 4 C 1.38351 * 120.01999 * 5.35960 * 3 2 1 5 5 C 1.37786 * 121.01176 * 180.02562 * 4 3 2 6 6 C 1.39861 * 121.57157 * 359.97438 * 5 4 3 7 7 S 1.76093 * 130.51081 * 180.02562 * 6 5 4 8 8 C 1.75510 * 91.51265 * 179.97438 * 7 6 5 9 9 C 1.32631 * 110.65999 * 0.02562 * 8 7 6 10 10 C 1.50694 * 122.10325 * 179.97438 * 9 8 7 11 11 C 1.39560 * 120.17318 * 0.02562 * 6 5 4 12 12 C 1.40880 * 120.01397 * 185.08771 * 3 2 1 13 13 C 1.40413 * 120.42758 * 0.02562 * 12 3 2 14 14 H 1.08000 * 120.00135 * 135.25908 * 13 12 3 15 15 C 1.39984 * 120.00267 * 315.25736 * 13 12 3 16 16 N 1.30883 * 120.00059 * 162.17230 * 15 13 12 17 17 Si 1.86804 * 119.99545 * 342.17473 * 15 13 12 18 18 H 1.48496 * 109.47116 * 95.28788 * 17 15 13 19 19 H 1.48497 * 109.46810 * 215.29019 * 17 15 13 20 20 H 1.48506 * 109.47115 * 335.28760 * 17 15 13 21 21 H 1.09001 * 109.47410 * 55.40438 * 1 2 3 22 22 H 1.09000 * 109.47200 * 175.40677 * 1 2 3 23 23 H 1.08997 * 109.46836 * 295.40479 * 1 2 3 24 24 H 1.07997 * 119.49245 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.21182 * 180.02562 * 5 4 3 26 26 H 1.08001 * 124.67295 * 179.97438 * 8 7 6 27 27 H 1.08996 * 109.47561 * 264.34630 * 10 9 8 28 28 H 1.08997 * 109.47450 * 24.34976 * 10 9 8 29 29 H 1.09005 * 109.47168 * 144.34876 * 10 9 8 30 30 H 0.97001 * 120.00028 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2966 2.3674 0.1119 5 6 1.9008 3.6057 0.1136 6 6 3.2882 3.7437 0.0035 7 16 4.2959 5.1877 -0.0193 8 6 5.7539 4.2241 -0.1814 9 6 5.4594 2.9313 -0.2122 10 6 6.5217 1.8709 -0.3462 11 6 4.0986 2.6134 -0.1124 12 6 3.4477 1.2856 -0.1082 13 6 4.2172 0.1162 -0.2170 14 1 5.0143 0.0599 -0.9436 15 6 3.9513 -0.9768 0.6161 16 7 4.4053 -2.1639 0.3033 17 14 2.9483 -0.7411 2.1744 18 1 1.5249 -1.0636 1.9004 19 1 3.4645 -1.6417 3.2362 20 1 3.0583 0.6696 2.6252 21 1 -0.3634 0.5835 -0.8459 22 1 -0.3633 -1.0244 -0.0823 23 1 -0.3633 0.4409 0.9283 24 1 0.2223 2.2998 0.1984 25 1 1.2885 4.4909 0.2029 26 1 6.7532 4.6283 -0.2479 27 1 6.6216 1.5870 -1.3938 28 1 7.4725 2.2611 0.0167 29 1 6.2393 0.9974 0.2416 30 1 4.2207 -2.9213 0.8805 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396289830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:22 Heat of formation + Delta-G solvation = -11.497255 kcal Electronic energy + Delta-G solvation = -16022.902842 eV Core-core repulsion = 13488.206868 eV Total energy + Delta-G solvation = -2534.695975 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79624 -38.94137 -35.74818 -35.56169 -32.34958 -30.40135 -28.68371 -27.74018 -26.77780 -23.31213 -22.81935 -20.26486 -19.95224 -18.12960 -17.77354 -17.01991 -16.72279 -16.32922 -15.84352 -15.10598 -14.95318 -14.62845 -14.12576 -13.83315 -13.52493 -13.37455 -13.12998 -13.07177 -12.80500 -12.58553 -12.34754 -11.94539 -11.87413 -11.62022 -11.20314 -11.09585 -10.86269 -9.73164 -8.98318 -8.82399 -8.31749 -6.27805 -0.02945 0.66871 0.92585 1.30141 1.31401 1.39866 1.49136 1.66665 2.23162 2.61622 2.85193 3.28940 4.09884 4.22257 4.36860 4.39147 4.47954 4.54498 4.70240 4.74513 4.82608 4.91582 4.99590 5.05454 5.22541 5.34724 5.47458 5.64506 5.74358 5.89225 5.93258 6.32155 6.45559 6.77045 7.05294 8.22437 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.023416 B = 0.011278 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.483507 B = 2482.111400 C = 3305.394820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C -0.014 4.014 4 C -0.136 4.136 5 C -0.174 4.174 6 C -0.134 4.134 7 S 0.055 5.945 8 C -0.246 4.246 9 C -0.065 4.065 10 C -0.093 4.093 11 C -0.159 4.159 12 C 0.084 3.916 13 C -0.453 4.453 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.839 5.839 17 Si 0.955 3.045 18 H -0.233 1.233 19 H -0.287 1.287 20 H -0.280 1.280 21 H 0.063 0.937 22 H 0.104 0.896 23 H 0.055 0.945 24 H 0.144 0.856 25 H 0.131 0.869 26 H 0.183 0.817 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 6.986 1.485 8.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C -0.061 4.061 4 C -0.157 4.157 5 C -0.199 4.199 6 C -0.249 4.249 7 S 0.317 5.683 8 C -0.379 4.379 9 C -0.076 4.076 10 C -0.152 4.152 11 C -0.166 4.166 12 C 0.079 3.921 13 C -0.481 4.481 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.465 5.465 17 Si 0.780 3.220 18 H -0.157 1.157 19 H -0.215 1.215 20 H -0.205 1.205 21 H 0.081 0.919 22 H 0.122 0.878 23 H 0.074 0.926 24 H 0.162 0.838 25 H 0.149 0.851 26 H 0.201 0.799 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.091 8.103 1.570 9.212 hybrid contribution -0.128 -1.623 0.323 1.660 sum -4.218 6.480 1.893 7.961 Atomic orbital electron populations 1.23121 0.78774 1.04248 1.01511 1.86091 1.21396 1.26839 1.89891 1.18970 0.91700 0.84702 1.10685 1.20931 0.99913 0.91388 1.03433 1.19855 0.90987 0.97202 1.11867 1.22697 0.98226 0.96116 1.07815 1.83198 0.97215 1.07509 1.80363 1.24931 1.02133 0.95067 1.15763 1.18764 0.93701 0.95223 0.99922 1.20704 0.95604 0.97106 1.01821 1.19308 0.92788 0.92642 1.11844 1.18097 0.89317 0.91467 0.93195 1.19067 1.15782 0.95372 1.17926 0.90494 1.26462 0.93531 0.93144 1.01063 1.69726 1.39044 1.00572 1.37146 0.85609 0.81337 0.78151 0.76895 1.15716 1.21453 1.20489 0.91855 0.87794 0.92641 0.83810 0.85128 0.79933 0.92105 0.90401 0.91467 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.34 113.37 1.06 1.63 16 2 O -0.33 -14.49 5.88 -90.37 -0.53 -15.02 16 3 C -0.01 -0.65 5.15 22.94 0.12 -0.53 16 4 C -0.14 -5.42 8.97 22.19 0.20 -5.22 16 5 C -0.17 -6.93 10.01 22.56 0.23 -6.70 16 6 C -0.13 -5.76 6.49 22.98 0.15 -5.61 16 7 S 0.05 1.92 23.30 -56.49 -1.32 0.61 16 8 C -0.25 -8.84 10.81 66.66 0.72 -8.12 16 9 C -0.06 -2.76 5.81 -20.58 -0.12 -2.88 16 10 C -0.09 -3.70 8.65 71.23 0.62 -3.08 16 11 C -0.16 -7.59 6.01 -19.95 -0.12 -7.71 16 12 C 0.08 4.33 4.85 -19.55 -0.09 4.24 16 13 C -0.45 -24.65 7.03 23.22 0.16 -24.49 16 14 H 0.08 4.41 6.54 -2.91 -0.02 4.39 16 15 C 0.07 3.94 4.95 85.26 0.42 4.36 16 16 N -0.84 -45.16 13.93 21.84 0.30 -44.85 16 17 Si 0.95 44.13 24.59 68.60 1.69 45.82 16 18 H -0.23 -9.93 5.83 99.48 0.58 -9.35 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 21 H 0.06 1.75 7.62 -2.39 -0.02 1.73 16 22 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 23 H 0.06 1.56 7.68 -2.39 -0.02 1.54 16 24 H 0.14 4.59 6.25 -2.91 -0.02 4.57 16 25 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 26 H 0.18 5.20 8.06 -2.91 -0.02 5.18 16 27 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 28 H 0.08 2.49 8.08 -2.39 -0.02 2.48 16 29 H 0.07 3.05 5.80 -2.38 -0.01 3.04 16 30 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -60.57 258.40 4.51 -56.06 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.03 Total: 11.49 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 3.34 Total: -54.11 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.30 Total: -44.85 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.53 Total: -15.02 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.69 Total: 45.82 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.32 Total: 0.61 kcal Total: -60.57 4.51 -56.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.560 kcal (2) G-P(sol) polarization free energy of solvation -60.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds