Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35835 * 116.99853 * 2 1 4 4 C 1.35782 * 119.87224 * 359.97438 * 3 2 1 5 5 C 1.41812 * 120.81893 * 180.02562 * 4 3 2 6 6 C 1.40536 * 128.58421 * 180.02562 * 5 4 3 7 7 C 1.32439 * 115.88392 * 180.02562 * 6 5 4 8 8 S 1.75463 * 110.87745 * 359.97438 * 7 6 5 9 9 C 1.40428 * 119.08563 * 0.02562 * 5 4 3 10 10 C 1.38771 * 120.26371 * 359.73568 * 9 5 4 11 11 C 1.50700 * 119.97314 * 180.27896 * 10 9 5 12 12 C 1.40358 * 120.05119 * 0.51651 * 10 9 5 13 13 C 1.40863 * 120.23667 * 179.76084 * 12 10 9 14 14 H 1.08000 * 120.00442 * 320.68079 * 13 12 10 15 15 C 1.39897 * 119.99858 * 140.40029 * 13 12 10 16 16 N 1.30908 * 120.00130 * 340.24902 * 15 13 12 17 17 Si 1.86800 * 120.00195 * 160.24474 * 15 13 12 18 18 H 1.48497 * 109.47184 * 59.99861 * 17 15 13 19 19 H 1.48502 * 109.47088 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46867 * 300.00070 * 17 15 13 21 21 H 1.09003 * 109.46452 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46629 * 299.99263 * 1 2 3 23 23 H 1.08993 * 109.47702 * 59.99268 * 1 2 3 24 24 H 1.07992 * 119.59025 * 0.04508 * 4 3 2 25 25 H 1.08002 * 122.05897 * 359.97438 * 6 5 4 26 26 H 1.08006 * 124.55872 * 179.97438 * 7 6 5 27 27 H 1.08997 * 109.47165 * 270.23838 * 11 10 9 28 28 H 1.09000 * 109.47259 * 30.23978 * 11 10 9 29 29 H 1.09004 * 109.47017 * 150.24019 * 11 10 9 30 30 H 0.96999 * 120.00391 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.3036 2.3474 -0.0005 5 6 1.9264 3.6214 -0.0011 6 6 1.3244 4.8913 -0.0012 7 6 2.1534 5.9242 -0.0023 8 16 3.8233 5.3856 -0.0026 9 6 3.3287 3.6958 -0.0016 10 6 4.0905 2.5359 0.0039 11 6 5.5950 2.6233 0.0096 12 6 3.4610 1.2814 -0.0009 13 6 4.2305 0.1016 -0.0004 14 1 5.1338 0.0457 -0.5898 15 6 3.8279 -0.9958 0.7683 16 7 2.9926 -0.8276 1.7621 17 14 4.4821 -2.7010 0.3764 18 1 5.9622 -2.7030 0.4961 19 1 3.9065 -3.6832 1.3301 20 1 4.0969 -3.0727 -1.0089 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 0.2257 2.2807 -0.0002 25 1 0.2517 5.0172 -0.0012 26 1 1.8432 6.9587 -0.0029 27 1 5.9615 2.6464 -1.0166 28 1 5.9042 3.5318 0.5264 29 1 6.0074 1.7548 0.5233 30 1 2.7137 -1.5884 2.2953 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396300638.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -3.476974 kcal Electronic energy + Delta-G solvation = -15838.644462 eV Core-core repulsion = 13304.296273 eV Total energy + Delta-G solvation = -2534.348189 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01555 -36.87358 -34.81632 -32.92184 -30.56069 -28.93166 -26.55672 -26.05632 -24.67813 -22.22160 -20.13577 -19.44094 -17.68013 -16.03014 -15.91859 -15.63498 -14.95590 -14.52970 -13.73987 -13.49610 -12.94001 -12.83959 -12.56253 -12.03252 -11.74332 -11.68786 -11.38280 -11.28150 -10.97831 -10.85367 -10.65909 -10.63136 -10.37794 -9.76745 -9.54000 -9.28372 -8.84414 -8.26860 -7.07081 -6.79112 -6.51274 -4.38187 1.85052 2.66509 2.76097 2.99681 3.05222 3.05960 3.10903 3.50617 3.92069 4.50738 4.59926 5.31707 5.69693 5.82206 5.88427 5.92961 6.07100 6.17246 6.40161 6.47834 6.61762 6.64098 6.73464 6.89198 6.98683 7.07183 7.26733 7.47743 7.60515 7.77145 7.83308 8.29677 8.35710 8.72967 8.96042 10.12331 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.008718 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.840941 B = 3210.968094 C = 4023.062781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.281 6.281 3 C 0.105 3.895 4 C -0.175 4.175 5 C -0.167 4.167 6 C -0.079 4.079 7 C -0.264 4.264 8 S 0.005 5.995 9 C -0.080 4.080 10 C -0.171 4.171 11 C -0.079 4.079 12 C 0.130 3.870 13 C -0.445 4.445 14 H 0.087 0.913 15 C 0.087 3.913 16 N -0.757 5.757 17 Si 0.908 3.092 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.263 1.263 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.037 0.963 24 H 0.102 0.898 25 H 0.117 0.883 26 H 0.144 0.856 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 2.023 -1.726 3.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.193 6.193 3 C 0.059 3.941 4 C -0.197 4.197 5 C -0.173 4.173 6 C -0.110 4.110 7 C -0.397 4.397 8 S 0.265 5.735 9 C -0.195 4.195 10 C -0.179 4.179 11 C -0.136 4.136 12 C 0.124 3.876 13 C -0.473 4.473 14 H 0.105 0.895 15 C -0.135 4.135 16 N -0.379 5.379 17 Si 0.732 3.268 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.187 1.187 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.120 0.880 25 H 0.135 0.865 26 H 0.162 0.838 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.852 2.541 -1.511 3.077 hybrid contribution -1.677 -1.228 -0.009 2.079 sum -2.530 1.313 -1.520 3.231 Atomic orbital electron populations 1.22759 0.82437 1.01695 0.99702 1.86264 1.17455 1.27029 1.88530 1.18729 0.92426 0.82911 1.00034 1.20208 0.97596 0.91157 1.10739 1.17468 0.91523 0.92595 1.15712 1.19714 0.99088 0.91526 1.00658 1.24488 0.95634 1.01349 1.18263 1.83487 1.07883 1.00232 1.81864 1.22050 0.95858 0.94651 1.06974 1.18794 0.94119 0.89461 1.15500 1.20343 0.92558 1.00819 0.99911 1.16701 0.88146 0.92092 0.90686 1.19271 1.08665 0.95854 1.23512 0.89522 1.25760 0.93647 1.00800 0.93311 1.69741 1.23402 1.33627 1.11115 0.86366 0.79758 0.81001 0.79642 1.19084 1.20401 1.18748 0.90188 0.94023 0.94468 0.88022 0.86482 0.83826 0.93770 0.94192 0.91383 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.80 101.05 0.99 1.54 16 2 O -0.28 -6.60 7.39 -19.22 -0.14 -6.74 16 3 C 0.10 2.62 6.11 -39.14 -0.24 2.38 16 4 C -0.18 -4.08 9.02 -39.10 -0.35 -4.43 16 5 C -0.17 -3.89 5.88 -106.84 -0.63 -4.52 16 6 C -0.08 -1.60 10.12 -40.64 -0.41 -2.01 16 7 C -0.26 -4.98 11.09 28.81 0.32 -4.66 16 8 S 0.01 0.10 22.58 -107.50 -2.43 -2.32 16 9 C -0.08 -1.91 6.29 -38.56 -0.24 -2.15 16 10 C -0.17 -4.18 5.96 -103.63 -0.62 -4.80 16 11 C -0.08 -1.69 9.32 36.01 0.34 -1.35 16 12 C 0.13 3.36 5.35 -106.78 -0.57 2.79 16 13 C -0.44 -11.22 7.55 -37.97 -0.29 -11.51 16 14 H 0.09 2.09 7.49 -52.49 -0.39 1.69 16 15 C 0.09 2.10 4.40 -17.32 -0.08 2.03 16 16 N -0.76 -18.91 11.25 55.55 0.62 -18.28 16 17 Si 0.91 18.22 29.60 -169.99 -5.03 13.19 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 22 H 0.04 0.73 7.64 -51.93 -0.40 0.33 16 23 H 0.04 0.61 7.63 -51.93 -0.40 0.22 16 24 H 0.10 2.09 6.14 -52.49 -0.32 1.77 16 25 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 26 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.79 7.59 -51.93 -0.39 0.39 16 29 H 0.07 1.45 6.99 -51.93 -0.36 1.09 16 30 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -27.47 267.19 -7.82 -35.29 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.09 Total: 1.54 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -1.78 Total: -26.70 kcal Atomic # 7 Polarization: -18.91 SS G_CDS: 0.62 Total: -18.28 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.14 Total: -6.74 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.43 Total: -2.32 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.47 -7.82 -35.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396300638.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.814 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds