Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35835 * 116.99853 * 2 1 4 4 C 1.35782 * 119.87224 * 359.97438 * 3 2 1 5 5 C 1.41812 * 120.81893 * 180.02562 * 4 3 2 6 6 C 1.40536 * 128.58421 * 180.02562 * 5 4 3 7 7 C 1.32439 * 115.88392 * 180.02562 * 6 5 4 8 8 S 1.75463 * 110.87745 * 359.97438 * 7 6 5 9 9 C 1.40428 * 119.08563 * 0.02562 * 5 4 3 10 10 C 1.38771 * 120.26371 * 359.73568 * 9 5 4 11 11 C 1.50700 * 119.97314 * 180.27896 * 10 9 5 12 12 C 1.40358 * 120.05119 * 0.51651 * 10 9 5 13 13 C 1.40863 * 120.23667 * 179.76084 * 12 10 9 14 14 H 1.08000 * 120.00442 * 320.68079 * 13 12 10 15 15 C 1.39897 * 119.99858 * 140.40029 * 13 12 10 16 16 N 1.30908 * 120.00130 * 340.24902 * 15 13 12 17 17 Si 1.86800 * 120.00195 * 160.24474 * 15 13 12 18 18 H 1.48497 * 109.47184 * 59.99861 * 17 15 13 19 19 H 1.48502 * 109.47088 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46867 * 300.00070 * 17 15 13 21 21 H 1.09003 * 109.46452 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46629 * 299.99263 * 1 2 3 23 23 H 1.08993 * 109.47702 * 59.99268 * 1 2 3 24 24 H 1.07992 * 119.59025 * 0.04508 * 4 3 2 25 25 H 1.08002 * 122.05897 * 359.97438 * 6 5 4 26 26 H 1.08006 * 124.55872 * 179.97438 * 7 6 5 27 27 H 1.08997 * 109.47165 * 270.23838 * 11 10 9 28 28 H 1.09000 * 109.47259 * 30.23978 * 11 10 9 29 29 H 1.09004 * 109.47017 * 150.24019 * 11 10 9 30 30 H 0.96999 * 120.00391 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.3036 2.3474 -0.0005 5 6 1.9264 3.6214 -0.0011 6 6 1.3244 4.8913 -0.0012 7 6 2.1534 5.9242 -0.0023 8 16 3.8233 5.3856 -0.0026 9 6 3.3287 3.6958 -0.0016 10 6 4.0905 2.5359 0.0039 11 6 5.5950 2.6233 0.0096 12 6 3.4610 1.2814 -0.0009 13 6 4.2305 0.1016 -0.0004 14 1 5.1338 0.0457 -0.5898 15 6 3.8279 -0.9958 0.7683 16 7 2.9926 -0.8276 1.7621 17 14 4.4821 -2.7010 0.3764 18 1 5.9622 -2.7030 0.4961 19 1 3.9065 -3.6832 1.3301 20 1 4.0969 -3.0727 -1.0089 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 0.2257 2.2807 -0.0002 25 1 0.2517 5.0172 -0.0012 26 1 1.8432 6.9587 -0.0029 27 1 5.9615 2.6464 -1.0166 28 1 5.9042 3.5318 0.5264 29 1 6.0074 1.7548 0.5233 30 1 2.7137 -1.5884 2.2953 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396300638.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -17.483897 kcal Electronic energy + Delta-G solvation = -15839.251848 eV Core-core repulsion = 13304.296273 eV Total energy + Delta-G solvation = -2534.955575 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73380 -38.54963 -36.52180 -34.65465 -32.28295 -30.65260 -28.11807 -27.76746 -26.39155 -23.92454 -21.84190 -21.10522 -19.44197 -17.73708 -17.55846 -17.35005 -16.63257 -16.13848 -15.41808 -15.02996 -14.62825 -14.50792 -14.22717 -13.66801 -13.39359 -13.33493 -13.08006 -12.90479 -12.65514 -12.49496 -12.27268 -12.20659 -11.96877 -11.41901 -11.25625 -11.00120 -10.54819 -9.96299 -8.83920 -8.54155 -8.18632 -6.22056 0.18061 0.94344 1.02597 1.39790 1.42424 1.44852 1.53001 1.83709 2.26960 2.80190 2.94531 3.51143 4.12571 4.31141 4.44013 4.48734 4.53059 4.72939 4.75640 4.84917 4.91650 4.95265 5.01456 5.19156 5.29256 5.34015 5.55044 5.76437 5.87318 6.00332 6.07564 6.47892 6.60978 6.93405 7.22959 8.40139 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.008718 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.840941 B = 3210.968094 C = 4023.062781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.089 3.911 4 C -0.187 4.187 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.238 4.238 8 S 0.032 5.968 9 C -0.121 4.121 10 C -0.189 4.189 11 C -0.072 4.072 12 C 0.092 3.908 13 C -0.478 4.478 14 H 0.083 0.917 15 C 0.054 3.946 16 N -0.792 5.792 17 Si 0.971 3.029 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.266 1.266 21 H 0.104 0.896 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.124 0.876 25 H 0.148 0.852 26 H 0.186 0.814 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 3.307 -2.007 4.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.043 3.957 4 C -0.208 4.208 5 C -0.181 4.181 6 C -0.131 4.131 7 C -0.371 4.371 8 S 0.292 5.708 9 C -0.236 4.236 10 C -0.197 4.197 11 C -0.129 4.129 12 C 0.087 3.913 13 C -0.507 4.507 14 H 0.101 0.899 15 C -0.165 4.165 16 N -0.416 5.416 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.190 1.190 21 H 0.123 0.877 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.142 0.858 25 H 0.165 0.835 26 H 0.203 0.797 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.577 3.833 -1.794 4.517 hybrid contribution -1.541 -1.346 0.049 2.047 sum -3.118 2.487 -1.745 4.354 Atomic orbital electron populations 1.23027 0.80035 1.03662 1.00441 1.86208 1.20053 1.26829 1.88502 1.18926 0.92607 0.83854 1.00358 1.20489 0.98745 0.90987 1.10616 1.18012 0.91875 0.93952 1.14275 1.19951 1.00981 0.90287 1.01872 1.25081 0.94523 1.03124 1.14385 1.83358 1.08829 0.97400 1.81228 1.22418 0.96559 0.96550 1.08058 1.19217 0.95593 0.89790 1.15060 1.20294 0.91099 1.00899 1.00592 1.17123 0.89246 0.92966 0.91970 1.19385 1.09287 0.97011 1.25012 0.89934 1.26432 0.93691 1.03752 0.92628 1.69792 1.25120 1.34565 1.12100 0.85410 0.79363 0.76771 0.79136 1.18447 1.19493 1.19022 0.87732 0.93829 0.92955 0.85844 0.83473 0.79670 0.92666 0.93062 0.92229 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.85 9.80 113.37 1.11 1.96 16 2 O -0.30 -14.49 7.39 -91.70 -0.68 -15.17 16 3 C 0.09 4.52 6.11 22.56 0.14 4.66 16 4 C -0.19 -8.66 9.02 22.58 0.20 -8.46 16 5 C -0.17 -7.94 5.88 -21.30 -0.13 -8.07 16 6 C -0.10 -3.75 10.12 21.71 0.22 -3.53 16 7 C -0.24 -7.98 11.09 66.70 0.74 -7.24 16 8 S 0.03 1.19 22.58 -56.49 -1.28 -0.09 16 9 C -0.12 -5.68 6.29 22.93 0.14 -5.54 16 10 C -0.19 -9.43 5.96 -19.22 -0.11 -9.55 16 11 C -0.07 -3.11 9.32 71.24 0.66 -2.44 16 12 C 0.09 4.94 5.35 -21.26 -0.11 4.83 16 13 C -0.48 -25.07 7.55 23.31 0.18 -24.89 16 14 H 0.08 4.17 7.49 -2.91 -0.02 4.15 16 15 C 0.05 2.66 4.40 85.23 0.38 3.03 16 16 N -0.79 -40.66 11.25 21.82 0.25 -40.42 16 17 Si 0.97 38.04 29.60 68.60 2.03 40.07 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 21 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 22 H 0.04 1.50 7.64 -2.39 -0.02 1.48 16 23 H 0.05 1.67 7.63 -2.39 -0.02 1.65 16 24 H 0.12 4.96 6.14 -2.91 -0.02 4.94 16 25 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 26 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.02 7.59 -2.39 -0.02 2.00 16 29 H 0.06 2.62 6.99 -2.39 -0.02 2.61 16 30 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 Total: -1.00 -59.92 267.19 4.90 -55.02 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.15 Total: 15.82 kcal Atomic # 6 Polarization: -58.65 SS G_CDS: 3.42 Total: -55.24 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.25 Total: -40.42 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.68 Total: -15.17 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.28 Total: -0.09 kcal Total: -59.92 4.90 -55.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396300638.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.541 kcal (2) G-P(sol) polarization free energy of solvation -59.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds