Wall clock time and date at job start Mon Mar 30 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47224 * 2 1 4 4 S 1.75459 * 124.59283 * 269.97607 * 3 2 1 5 5 C 1.76048 * 91.60978 * 180.02562 * 4 3 2 6 6 C 1.38843 * 130.40410 * 180.02562 * 5 4 3 7 7 C 1.40399 * 119.97769 * 179.21753 * 6 5 4 8 8 C 1.40959 * 120.20211 * 180.23085 * 7 6 5 9 9 H 1.07999 * 120.00172 * 330.57057 * 8 7 6 10 10 C 1.39819 * 119.99990 * 150.57198 * 8 7 6 11 11 N 1.30922 * 120.00200 * 161.71990 * 10 8 7 12 12 Si 1.86799 * 119.99803 * 341.72282 * 10 8 7 13 13 H 1.48501 * 109.47244 * 95.42071 * 12 10 8 14 14 H 1.48501 * 109.47188 * 215.41614 * 12 10 8 15 15 H 1.48496 * 109.47532 * 335.41761 * 12 10 8 16 16 C 1.41265 * 119.59073 * 0.69657 * 7 6 5 17 17 C 1.35167 * 120.38723 * 359.55199 * 16 7 6 18 18 C 1.40375 * 109.45032 * 359.74476 * 5 4 3 19 19 C 1.32996 * 124.59203 * 90.00214 * 3 2 1 20 20 O 1.36131 * 122.12487 * 359.97438 * 19 3 2 21 21 H 1.09002 * 109.47043 * 299.99920 * 1 2 3 22 22 H 1.09006 * 109.47010 * 59.99379 * 1 2 3 23 23 H 1.08992 * 109.47249 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47043 * 240.00080 * 2 1 3 25 25 H 1.08996 * 109.47512 * 120.00040 * 2 1 3 26 26 H 1.08007 * 120.00963 * 359.97404 * 6 5 4 27 27 H 0.96997 * 119.99876 * 179.97438 * 11 10 8 28 28 H 1.08001 * 119.80839 * 179.53022 * 16 7 6 29 29 H 1.08002 * 119.56714 * 179.97438 * 17 16 7 30 30 H 0.96699 * 113.99439 * 90.02601 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3650 2.3598 -1.4444 5 6 2.8576 3.7519 -0.4860 6 6 3.3012 5.0063 -0.8830 7 6 3.6258 5.9733 0.0818 8 6 4.0720 7.2498 -0.3160 9 1 4.6093 7.3688 -1.2453 10 6 3.8190 8.3621 0.4925 11 7 4.5137 9.4601 0.3316 12 14 2.4897 8.2816 1.8025 13 1 3.1021 7.9270 3.1080 14 1 1.8217 9.6033 1.9119 15 1 1.4885 7.2504 1.4290 16 6 3.5120 5.6557 1.4536 17 6 3.0849 4.4326 1.8391 18 6 2.7422 3.4443 0.8788 19 6 2.2841 2.1326 1.0948 20 8 2.1042 1.6255 2.3453 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.3848 5.2421 -1.9336 27 1 4.3379 10.2318 0.8922 28 1 3.7681 6.3944 2.1987 29 1 3.0032 4.2039 2.8914 30 1 2.8852 1.1845 2.7068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396306551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:04 Heat of formation + Delta-G solvation = -40.711698 kcal Electronic energy + Delta-G solvation = -15255.945756 eV Core-core repulsion = 12719.982948 eV Total energy + Delta-G solvation = -2535.962808 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69154 -38.72061 -35.92315 -35.22570 -33.53935 -31.81135 -30.09832 -27.01049 -24.40859 -24.04898 -22.25046 -21.29394 -19.66106 -18.51861 -18.11883 -17.16073 -16.63056 -16.18415 -15.55019 -15.09903 -14.83131 -14.55129 -14.48111 -14.21598 -13.98201 -13.49199 -13.14359 -12.89832 -12.72850 -12.37526 -12.17751 -12.05238 -11.80154 -11.62132 -11.38278 -11.17060 -10.96729 -10.31708 -9.21462 -9.05175 -8.49458 -6.55888 -0.05628 0.62086 0.76409 1.13571 1.19602 1.27328 1.43124 1.52468 2.04776 2.46611 3.30251 3.54908 3.82907 4.09705 4.29119 4.35609 4.49796 4.61792 4.71141 4.79488 4.91847 4.99283 5.08059 5.09833 5.27223 5.35066 5.38626 5.61949 5.68435 5.74368 5.98203 6.16088 6.54691 6.63580 6.86557 8.01678 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.006692 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.479042 B = 4182.789109 C = 4590.669588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.034 4.034 3 C -0.242 4.242 4 S 0.066 5.934 5 C -0.083 4.083 6 C -0.221 4.221 7 C 0.095 3.905 8 C -0.461 4.461 9 H 0.067 0.933 10 C 0.054 3.946 11 N -0.826 5.826 12 Si 0.959 3.041 13 H -0.248 1.248 14 H -0.269 1.269 15 H -0.260 1.260 16 C -0.222 4.222 17 C -0.035 4.035 18 C -0.230 4.230 19 C 0.130 3.870 20 O -0.487 6.487 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.301 0.699 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -13.447 3.212 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.358 4.358 4 S 0.327 5.673 5 C -0.198 4.198 6 C -0.248 4.248 7 C 0.089 3.911 8 C -0.489 4.489 9 H 0.085 0.915 10 C -0.164 4.164 11 N -0.450 5.450 12 Si 0.782 3.218 13 H -0.173 1.173 14 H -0.195 1.195 15 H -0.184 1.184 16 C -0.242 4.242 17 C -0.055 4.055 18 C -0.236 4.236 19 C 0.075 3.925 20 O -0.299 6.299 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.499 -13.312 1.679 14.501 hybrid contribution 0.531 0.927 1.644 1.961 sum -4.968 -12.385 3.323 13.752 Atomic orbital electron populations 1.21734 0.94348 1.02502 1.01353 1.19944 0.96163 0.87752 1.03491 1.24197 1.14740 1.02373 0.94473 1.83520 1.71528 1.04184 1.08072 1.22330 1.02996 0.98031 0.96454 1.20289 1.13127 0.93126 0.98215 1.17715 0.88511 0.93016 0.91810 1.19464 1.31179 0.91580 1.06716 0.91528 1.26817 0.97143 0.94116 0.98326 1.69723 1.34167 1.04535 1.36548 0.85589 0.79180 0.78376 0.78671 1.17281 1.19522 1.18376 1.20842 1.09843 0.97811 0.95662 1.20531 0.94795 0.91770 0.98412 1.18265 1.15599 0.96867 0.92917 1.16817 1.00687 0.89896 0.85114 1.84787 1.41293 1.76275 1.27532 0.93751 0.93467 0.90032 0.90169 0.89186 0.87797 0.88841 0.86899 0.85115 0.74201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.89 71.98 0.71 -2.42 16 2 C -0.03 -0.81 6.22 29.85 0.19 -0.62 16 3 C -0.24 -7.80 5.69 24.52 0.14 -7.66 16 4 S 0.07 2.35 23.26 -56.49 -1.31 1.04 16 5 C -0.08 -3.67 6.46 22.94 0.15 -3.52 16 6 C -0.22 -10.73 9.81 22.94 0.23 -10.50 16 7 C 0.10 4.85 5.09 -21.34 -0.11 4.74 16 8 C -0.46 -24.98 9.54 23.32 0.22 -24.76 16 9 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 10 C 0.05 2.76 5.40 85.21 0.46 3.22 16 11 N -0.83 -42.68 13.93 21.81 0.30 -42.38 16 12 Si 0.96 40.72 24.51 68.60 1.68 42.40 16 13 H -0.25 -9.72 6.70 99.48 0.67 -9.05 16 14 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.26 -11.70 6.87 99.48 0.68 -11.02 16 16 C -0.22 -10.34 7.06 22.31 0.16 -10.19 16 17 C -0.04 -1.49 9.91 22.49 0.22 -1.26 16 18 C -0.23 -9.74 5.89 -21.25 -0.13 -9.86 16 19 C 0.13 4.63 6.70 21.68 0.15 4.77 16 20 O -0.49 -14.26 13.02 -95.05 -1.24 -15.49 16 21 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 1.82 7.88 -2.39 -0.02 1.80 16 26 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 27 H 0.30 13.79 8.30 -92.71 -0.77 13.02 16 28 H 0.11 5.04 4.72 -2.91 -0.01 5.03 16 29 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.40 7.71 9.07 -74.06 -0.67 7.04 16 Total: -1.00 -59.32 269.76 2.25 -57.07 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.44 Total: 15.43 kcal Atomic # 6 Polarization: -60.45 SS G_CDS: 2.38 Total: -58.06 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.30 Total: -42.38 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -1.24 Total: -15.49 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.68 Total: 42.40 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -59.32 2.25 -57.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396306551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.355 kcal (2) G-P(sol) polarization free energy of solvation -59.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds