Wall clock time and date at job start Mon Mar 30 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47153 * 2 1 4 4 S 1.69985 * 124.03292 * 273.07852 * 3 2 1 5 5 C 1.75796 * 93.22234 * 179.97438 * 4 3 2 6 6 C 1.39898 * 130.16197 * 179.97438 * 5 4 3 7 7 C 1.37645 * 120.49681 * 180.02562 * 6 5 4 8 8 C 1.38550 * 120.24478 * 359.97438 * 7 6 5 9 9 C 1.38027 * 120.19758 * 359.97438 * 8 7 6 10 10 O 1.35823 * 119.90089 * 180.02562 * 9 8 7 11 11 C 1.39263 * 110.18509 * 0.02562 * 5 4 3 12 12 C 1.36479 * 124.03459 * 92.78095 * 3 2 1 13 13 C 1.40816 * 123.30063 * 359.97438 * 12 3 2 14 14 H 1.07998 * 119.99849 * 49.38312 * 13 12 3 15 15 C 1.39678 * 119.99839 * 229.38014 * 13 12 3 16 16 N 1.31097 * 120.00277 * 15.71383 * 15 13 12 17 17 Si 1.86798 * 120.00096 * 195.70827 * 15 13 12 18 18 H 1.48509 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47315 * 120.00239 * 17 15 13 20 20 H 1.48504 * 109.47426 * 240.00287 * 17 15 13 21 21 H 1.09002 * 109.47117 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47648 * 300.00548 * 1 2 3 23 23 H 1.09002 * 109.47165 * 60.00135 * 1 2 3 24 24 H 1.09005 * 109.46533 * 119.99484 * 2 1 3 25 25 H 1.08994 * 109.47713 * 239.99620 * 2 1 3 26 26 H 1.08007 * 119.75016 * 0.02562 * 6 5 4 27 27 H 1.07993 * 119.88420 * 179.97438 * 7 6 5 28 28 H 1.07998 * 119.90064 * 179.97438 * 8 7 6 29 29 H 0.96705 * 113.99839 * 270.02543 * 10 9 8 30 30 H 0.96996 * 120.00356 * 174.49577 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.2781 2.3430 -1.4067 5 6 2.8263 3.7506 -0.5075 6 6 3.2441 5.0056 -0.9629 7 6 3.6382 5.9769 -0.0707 8 6 3.6244 5.7207 1.2908 9 6 3.2148 4.4896 1.7615 10 8 3.2031 4.2451 3.0975 11 6 2.8103 3.4839 0.8593 12 6 2.3387 2.1227 1.1297 13 6 2.2168 1.5903 2.4276 14 1 2.6403 0.6236 2.6567 15 6 1.5480 2.3124 3.4187 16 7 0.7769 3.3199 3.0882 17 14 1.7523 1.8427 5.2151 18 1 2.6693 0.6794 5.3214 19 1 2.3211 2.9911 5.9654 20 1 0.4293 1.4845 5.7866 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8932 -0.5138 0.8901 25 1 1.8934 -0.5138 -0.8899 26 1 3.2576 5.2140 -2.0226 27 1 3.9593 6.9421 -0.4332 28 1 3.9352 6.4867 1.9859 29 1 4.0315 3.8802 3.4378 30 1 0.2505 3.7707 3.7668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:53 Heat of formation + Delta-G solvation = -31.197328 kcal Electronic energy + Delta-G solvation = -15992.362187 eV Core-core repulsion = 13456.811953 eV Total energy + Delta-G solvation = -2535.550234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51444 -37.46280 -36.92450 -34.48827 -33.17945 -30.54598 -29.36556 -27.48308 -24.46450 -23.66600 -22.31788 -20.98835 -19.23736 -18.15878 -17.31419 -16.87806 -16.25417 -16.21080 -15.61088 -15.16266 -14.81084 -14.26088 -14.15371 -13.80986 -13.20842 -13.04293 -12.97959 -12.94989 -12.56696 -12.36858 -12.03326 -11.92997 -11.66347 -11.37348 -11.23218 -10.90279 -10.50475 -9.76180 -8.96718 -8.41548 -8.04838 -6.13812 0.24319 0.45555 1.14392 1.36221 1.44793 1.55018 1.83445 1.98110 2.38197 2.90456 3.37969 3.65328 4.14645 4.23512 4.43903 4.47178 4.50587 4.73648 4.76395 4.96400 5.02611 5.15304 5.30685 5.41231 5.42728 5.51876 5.54804 5.65363 5.75798 6.08575 6.24875 6.53136 6.95999 7.15169 7.20839 8.68269 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.013727 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.857582 B = 2039.236512 C = 3354.074638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.009 4.009 3 C -0.375 4.375 4 S 0.067 5.933 5 C -0.153 4.153 6 C -0.120 4.120 7 C -0.094 4.094 8 C -0.181 4.181 9 C 0.159 3.841 10 O -0.482 6.482 11 C -0.109 4.109 12 C 0.107 3.893 13 C -0.505 4.505 14 H 0.064 0.936 15 C 0.085 3.915 16 N -0.826 5.826 17 Si 0.958 3.042 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.284 1.284 21 H 0.068 0.932 22 H 0.028 0.972 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.142 0.858 27 H 0.164 0.836 28 H 0.143 0.857 29 H 0.382 0.618 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 2.331 -3.298 6.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 C -0.490 4.490 4 S 0.331 5.669 5 C -0.268 4.268 6 C -0.143 4.143 7 C -0.114 4.114 8 C -0.202 4.202 9 C 0.112 3.888 10 O -0.292 6.292 11 C -0.118 4.118 12 C 0.098 3.902 13 C -0.539 4.539 14 H 0.082 0.918 15 C -0.130 4.130 16 N -0.453 5.453 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.210 1.210 21 H 0.087 0.913 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.160 0.840 27 H 0.181 0.819 28 H 0.160 0.840 29 H 0.238 0.762 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.607 2.335 -4.746 6.402 hybrid contribution 0.387 -0.192 2.623 2.659 sum 3.994 2.144 -2.122 5.005 Atomic orbital electron populations 1.21583 0.95769 1.00785 1.00379 1.19466 0.95157 0.90157 1.00111 1.23517 1.25118 1.04479 0.95917 1.81372 1.72710 1.03190 1.09615 1.22916 1.07077 1.00008 0.96803 1.20726 1.02211 0.90708 1.00690 1.21070 0.99114 0.99561 0.91643 1.21389 1.05145 0.96542 0.97160 1.18495 0.95775 0.91784 0.82707 1.84882 1.40037 1.85442 1.18813 1.20248 1.02286 0.96860 0.92426 1.17509 0.90324 0.88423 0.93978 1.18663 1.36965 1.04308 0.93949 0.91771 1.25920 0.92317 0.92201 1.02598 1.69842 1.20244 1.18904 1.36343 0.85563 0.78265 0.78723 0.79233 1.18846 1.19157 1.20976 0.91318 0.95259 0.93664 0.92693 0.92385 0.84031 0.81866 0.83965 0.76160 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.89 71.98 0.71 -4.34 16 2 C -0.01 -0.40 6.06 29.85 0.18 -0.22 16 3 C -0.37 -18.20 5.56 25.27 0.14 -18.06 16 4 S 0.07 2.88 22.89 -56.49 -1.29 1.59 16 5 C -0.15 -6.82 6.44 22.92 0.15 -6.67 16 6 C -0.12 -4.33 10.06 22.53 0.23 -4.10 16 7 C -0.09 -3.01 10.02 22.20 0.22 -2.78 16 8 C -0.18 -6.61 9.95 22.29 0.22 -6.39 16 9 C 0.16 7.15 6.28 22.91 0.14 7.29 16 10 O -0.48 -21.35 9.28 -91.56 -0.85 -22.20 16 11 C -0.11 -5.40 5.59 -20.17 -0.11 -5.52 16 12 C 0.11 5.69 5.19 -20.88 -0.11 5.58 16 13 C -0.51 -27.00 7.87 23.25 0.18 -26.81 16 14 H 0.06 3.44 7.52 -2.91 -0.02 3.42 16 15 C 0.08 4.33 3.19 85.15 0.27 4.60 16 16 N -0.83 -45.18 11.40 21.79 0.25 -44.93 16 17 Si 0.96 40.21 29.45 68.60 2.02 42.23 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 2.42 7.22 -2.38 -0.02 2.40 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 27 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.38 13.89 9.06 -74.05 -0.67 13.22 16 30 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -63.04 269.30 2.85 -60.20 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.49 Total: 20.54 kcal Atomic # 6 Polarization: -59.66 SS G_CDS: 2.23 Total: -57.43 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.25 Total: -44.93 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.85 Total: -22.20 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.02 Total: 42.23 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.29 Total: 1.59 kcal Total: -63.04 2.85 -60.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.999 kcal (2) G-P(sol) polarization free energy of solvation -63.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds