Wall clock time and date at job start Mon Mar 30 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47249 * 2 1 4 4 C 1.38333 * 120.07668 * 269.97409 * 3 2 1 5 5 O 1.35963 * 119.68077 * 0.02866 * 4 3 2 6 6 C 1.38265 * 120.63488 * 180.02562 * 4 3 2 7 7 C 1.41370 * 120.85740 * 359.92688 * 6 4 3 8 8 C 1.45471 * 129.11351 * 180.02562 * 7 6 4 9 9 C 1.31871 * 114.88602 * 180.02562 * 8 7 6 10 10 S 1.75292 * 111.33218 * 0.02562 * 9 8 7 11 11 C 1.39386 * 119.04083 * 0.07613 * 7 6 4 12 12 C 1.40303 * 120.07896 * 89.99702 * 3 2 1 13 13 C 1.40924 * 120.07140 * 0.02562 * 12 3 2 14 14 H 1.07997 * 119.99565 * 316.20096 * 13 12 3 15 15 C 1.39904 * 120.00077 * 136.20271 * 13 12 3 16 16 N 1.30872 * 119.99987 * 152.63393 * 15 13 12 17 17 Si 1.86796 * 119.99937 * 332.62938 * 15 13 12 18 18 H 1.48496 * 109.47168 * 94.57179 * 17 15 13 19 19 H 1.48503 * 109.47193 * 214.57112 * 17 15 13 20 20 H 1.48502 * 109.47286 * 334.56714 * 17 15 13 21 21 H 1.09006 * 109.46866 * 59.99973 * 1 2 3 22 22 H 1.08994 * 109.47364 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47208 * 300.00483 * 1 2 3 24 24 H 1.08996 * 109.46749 * 239.99757 * 2 1 3 25 25 H 1.08999 * 109.46493 * 119.99944 * 2 1 3 26 26 H 0.96694 * 114.00432 * 89.99846 * 5 4 3 27 27 H 1.07998 * 119.56889 * 180.02562 * 6 4 3 28 28 H 1.08009 * 122.55781 * 0.02562 * 8 7 6 29 29 H 1.08003 * 124.33289 * 180.02562 * 9 8 7 30 30 H 0.96994 * 120.00262 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2640 2.0742 -1.1971 5 8 2.0357 1.4286 -2.3717 6 6 2.7254 3.3775 -1.2105 7 6 2.9696 4.0728 -0.0041 8 6 3.4499 5.4320 0.1908 9 6 3.5788 5.7998 1.4506 10 16 3.1215 4.5068 2.5423 11 6 2.7400 3.4250 1.2085 12 6 2.2667 2.0838 1.2141 13 6 2.0334 1.4223 2.4364 14 1 1.1385 0.8324 2.5688 15 6 2.9609 1.5299 3.4782 16 7 2.5665 1.4101 4.7204 17 14 4.7621 1.8445 3.0964 18 1 5.0353 3.3025 3.1647 19 1 5.6097 1.1351 4.0882 20 1 5.0735 1.3458 1.7327 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 1.1369 1.5366 -2.7116 27 1 2.9000 3.8713 -2.1550 28 1 3.6832 6.0898 -0.6335 29 1 3.9222 6.7730 1.7690 30 1 3.2095 1.4851 5.4427 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:37 Heat of formation + Delta-G solvation = -34.777624 kcal Electronic energy + Delta-G solvation = -15920.754196 eV Core-core repulsion = 13385.048709 eV Total energy + Delta-G solvation = -2535.705487 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60389 -38.08622 -36.62673 -34.91284 -33.31219 -31.54096 -28.93111 -27.23883 -24.75774 -23.38614 -22.37656 -20.89369 -19.80247 -18.26839 -17.88681 -17.11456 -16.71180 -15.81159 -15.68551 -15.27172 -14.72433 -14.41011 -14.25681 -14.00119 -13.72714 -13.44476 -13.17840 -13.08591 -12.79401 -12.33380 -12.24087 -11.98358 -11.61388 -11.34233 -11.21170 -11.13734 -10.88396 -9.82324 -9.02965 -8.91561 -8.32073 -6.45563 0.07258 0.55799 0.86307 1.22116 1.35411 1.38704 1.49639 1.62521 2.14245 2.54257 3.19004 3.50938 4.04579 4.27753 4.33366 4.44570 4.60542 4.70958 4.81579 4.89325 5.06666 5.09073 5.16642 5.19584 5.32478 5.42918 5.57082 5.70138 5.72187 5.94221 6.03725 6.27427 6.63820 6.76609 7.08960 8.14928 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.013874 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.878102 B = 2017.669462 C = 3016.409191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 C -0.207 4.207 4 C 0.141 3.859 5 O -0.503 6.503 6 C -0.215 4.215 7 C -0.055 4.055 8 C -0.132 4.132 9 C -0.199 4.199 10 S 0.032 5.968 11 C -0.227 4.227 12 C 0.117 3.883 13 C -0.491 4.491 14 H 0.071 0.929 15 C 0.084 3.916 16 N -0.827 5.827 17 Si 0.858 3.142 18 H -0.186 1.186 19 H -0.265 1.265 20 H -0.276 1.276 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.401 0.599 27 H 0.134 0.866 28 H 0.169 0.831 29 H 0.195 0.805 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 5.148 -7.605 9.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.212 4.212 4 C 0.095 3.905 5 O -0.315 6.315 6 C -0.237 4.237 7 C -0.063 4.063 8 C -0.163 4.163 9 C -0.332 4.332 10 S 0.295 5.705 11 C -0.342 4.342 12 C 0.112 3.888 13 C -0.520 4.520 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.452 5.452 17 Si 0.680 3.320 18 H -0.109 1.109 19 H -0.190 1.190 20 H -0.201 1.201 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.258 0.742 27 H 0.152 0.848 28 H 0.186 0.814 29 H 0.212 0.788 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.318 4.909 -5.641 7.593 hybrid contribution 0.100 -0.064 -1.121 1.128 sum 1.418 4.845 -6.762 8.439 Atomic orbital electron populations 1.21590 0.94727 1.01474 1.00916 1.20032 0.96127 0.92117 1.00988 1.20298 1.11760 0.97649 0.91471 1.17831 0.98255 0.89957 0.84438 1.84679 1.36949 1.73794 1.36081 1.20806 1.12131 0.94432 0.96320 1.19392 1.00199 0.94217 0.92502 1.21159 1.03082 0.94134 0.97890 1.25478 1.07624 1.03576 0.96517 1.84385 1.70112 1.05522 1.10492 1.23086 1.16775 0.98825 0.95489 1.16976 0.89962 0.88574 0.93310 1.19046 1.07615 1.29959 0.95397 0.91060 1.26173 1.02929 0.90744 0.93589 1.69796 1.38249 1.36512 1.00642 0.87125 0.80723 0.85008 0.79169 1.10937 1.19017 1.20080 0.92039 0.91489 0.95048 0.91275 0.93324 0.74212 0.84778 0.81354 0.78838 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.90 71.98 0.71 -3.74 16 2 C -0.06 -2.22 5.32 29.85 0.16 -2.07 16 3 C -0.21 -9.38 5.20 -19.34 -0.10 -9.48 16 4 C 0.14 5.68 6.64 22.30 0.15 5.83 16 5 O -0.50 -16.57 12.49 -93.13 -1.16 -17.74 16 6 C -0.22 -8.44 10.03 23.05 0.23 -8.21 16 7 C -0.06 -2.30 6.03 -20.37 -0.12 -2.43 16 8 C -0.13 -4.45 10.39 23.32 0.24 -4.21 16 9 C -0.20 -6.59 11.02 67.00 0.74 -5.85 16 10 S 0.03 1.37 18.04 -56.49 -1.02 0.35 16 11 C -0.23 -10.79 4.97 23.54 0.12 -10.67 16 12 C 0.12 5.95 4.62 -21.13 -0.10 5.85 16 13 C -0.49 -26.82 7.91 23.33 0.18 -26.63 16 14 H 0.07 4.16 7.34 -2.91 -0.02 4.13 16 15 C 0.08 4.44 4.58 85.24 0.39 4.83 16 16 N -0.83 -44.53 13.93 21.82 0.30 -44.22 16 17 Si 0.86 40.36 25.06 68.60 1.72 42.08 16 18 H -0.19 -8.07 5.33 98.03 0.52 -7.55 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 21 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.03 1.21 7.67 -2.39 -0.02 1.19 16 24 H 0.07 2.54 7.51 -2.39 -0.02 2.52 16 25 H 0.05 2.17 7.05 -2.39 -0.02 2.15 16 26 H 0.40 9.05 9.06 -74.06 -0.67 8.37 16 27 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.17 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.19 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 Total: -1.00 -62.03 263.07 2.75 -59.28 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.31 Total: 17.02 kcal Atomic # 6 Polarization: -59.37 SS G_CDS: 2.60 Total: -56.76 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.30 Total: -44.22 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.16 Total: -17.74 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.72 Total: 42.08 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.02 Total: 0.35 kcal Total: -62.03 2.75 -59.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.499 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds