Wall clock time and date at job start Mon Mar 30 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47128 * 2 1 4 4 C 1.35785 * 119.57656 * 264.99896 * 3 2 1 5 5 C 1.41107 * 120.10530 * 179.97438 * 4 3 2 6 6 C 1.41257 * 120.07388 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99984 * 330.10942 * 6 5 4 8 8 C 1.39860 * 120.00393 * 150.11058 * 6 5 4 9 9 N 1.30899 * 120.00079 * 161.66474 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 341.67318 * 8 6 5 11 11 H 1.48492 * 109.47427 * 95.40445 * 10 8 6 12 12 H 1.48503 * 109.46937 * 215.40742 * 10 8 6 13 13 H 1.48500 * 109.47055 * 335.40265 * 10 8 6 14 14 C 1.39975 * 119.86043 * 359.97438 * 5 4 3 15 15 C 1.40481 * 119.98623 * 0.02562 * 14 5 4 16 16 C 1.45521 * 129.13165 * 180.02562 * 15 14 5 17 17 C 1.32399 * 114.76307 * 179.97438 * 16 15 14 18 18 O 1.35705 * 124.27088 * 179.97438 * 17 16 15 19 19 S 1.75248 * 111.45592 * 359.97438 * 17 16 15 20 20 C 1.40239 * 119.04106 * 359.74218 * 15 14 5 21 21 H 1.08996 * 109.47476 * 299.99743 * 1 2 3 22 22 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47283 * 59.99905 * 1 2 3 24 24 H 1.09004 * 109.47283 * 120.00095 * 2 1 3 25 25 H 1.09007 * 109.47284 * 239.99820 * 2 1 3 26 26 H 1.08001 * 119.94809 * 359.95668 * 4 3 2 27 27 H 0.96996 * 120.00521 * 180.02562 * 9 8 6 28 28 H 1.08003 * 120.00706 * 180.02562 * 14 5 4 29 29 H 1.08005 * 122.62024 * 0.02562 * 16 15 14 30 30 H 0.96693 * 114.00273 * 90.00050 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3527 2.0183 -1.1764 5 6 2.8236 3.3485 -1.1894 6 6 3.1573 3.9693 -2.4136 7 1 3.5209 3.3751 -3.2390 8 6 3.0169 5.3534 -2.5570 9 7 3.6417 5.9781 -3.5227 10 14 1.9379 6.3106 -1.3700 11 1 2.7772 6.8739 -0.2822 12 1 1.2620 7.4155 -2.0965 13 1 0.9165 5.4033 -0.7879 14 6 2.9594 4.0515 0.0133 15 6 2.6276 3.4323 1.2298 16 6 2.6904 3.9693 2.5809 17 6 2.3055 3.1300 3.5297 18 8 2.2876 3.4291 4.8533 19 16 1.8221 1.5841 2.8607 20 6 2.1571 2.1112 1.2152 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 2.2473 1.4746 -2.1036 27 1 3.5447 6.9381 -3.6220 28 1 3.3192 5.0698 0.0060 29 1 3.0242 4.9744 2.7929 30 1 1.4526 3.8088 5.1595 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396313910.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:04 Heat of formation + Delta-G solvation = -21.302642 kcal Electronic energy + Delta-G solvation = -15390.467765 eV Core-core repulsion = 12855.346597 eV Total energy + Delta-G solvation = -2535.121168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.75094 -37.68482 -34.33525 -34.29690 -32.20643 -29.12799 -27.94802 -25.41841 -23.42636 -22.28579 -20.54914 -19.77874 -18.29673 -17.05100 -16.35596 -15.31367 -15.06084 -14.96131 -14.00458 -13.90944 -13.30128 -13.16642 -12.81677 -12.60349 -12.21771 -11.86394 -11.59566 -11.45493 -11.15578 -10.82454 -10.61985 -10.46174 -10.08889 -9.95443 -9.86745 -9.56541 -9.15088 -8.50107 -7.56588 -7.06450 -6.95343 -4.58814 1.45433 2.06469 2.34515 2.77653 2.92141 3.06987 3.21018 3.26179 3.90752 4.28755 4.48284 5.17741 5.36187 5.43821 5.76723 5.79890 5.92725 6.11179 6.15434 6.19854 6.32248 6.38353 6.43289 6.56886 6.78009 6.98709 7.11589 7.24466 7.38462 7.59324 7.68735 7.84204 8.21412 8.46066 8.66257 9.95241 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.009326 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.520970 B = 3001.792467 C = 3973.133454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.023 4.023 4 C -0.160 4.160 5 C 0.095 3.905 6 C -0.439 4.439 7 H 0.094 0.906 8 C 0.085 3.915 9 N -0.802 5.802 10 Si 0.910 3.090 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.243 1.243 14 C -0.224 4.224 15 C -0.021 4.021 16 C -0.144 4.144 17 C 0.017 3.983 18 O -0.462 6.462 19 S 0.007 5.993 20 C -0.219 4.219 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.287 0.713 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -4.283 8.101 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.027 4.027 4 C -0.180 4.180 5 C 0.091 3.909 6 C -0.467 4.467 7 H 0.112 0.888 8 C -0.135 4.135 9 N -0.425 5.425 10 Si 0.736 3.264 11 H -0.195 1.195 12 H -0.218 1.218 13 H -0.166 1.166 14 C -0.246 4.246 15 C -0.027 4.027 16 C -0.177 4.177 17 C -0.142 4.142 18 O -0.271 6.271 19 S 0.265 5.735 20 C -0.333 4.333 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.154 0.846 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.300 -5.593 8.591 11.541 hybrid contribution -0.255 2.208 -0.074 2.224 sum -5.555 -3.385 8.517 10.717 Atomic orbital electron populations 1.21708 0.95280 1.00754 1.02355 1.20532 0.95929 0.93815 1.01859 1.18568 0.98983 0.94263 0.90900 1.20698 1.05080 0.96744 0.95520 1.17508 0.88964 0.91822 0.92581 1.19464 1.36536 0.92329 0.98418 0.88761 1.26177 0.94032 0.97983 0.95348 1.69716 1.32337 1.11365 1.29091 0.86297 0.81609 0.78848 0.79601 1.19520 1.21754 1.16618 1.20747 1.13250 1.00364 0.90222 1.18583 0.99382 0.92702 0.92018 1.21507 1.04090 1.00386 0.91750 1.21896 1.09294 0.96979 0.85986 1.84815 1.40096 1.83062 1.19091 1.83532 1.73719 1.16088 1.00163 1.21561 1.19515 0.98142 0.94093 0.92654 0.93140 0.92444 0.91976 0.91340 0.87030 0.90248 0.87691 0.84612 0.76164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 37.15 0.37 -1.73 16 2 C -0.08 -1.37 5.85 -27.89 -0.16 -1.53 16 3 C -0.02 -0.47 5.12 -104.72 -0.54 -1.01 16 4 C -0.16 -3.52 9.30 -39.37 -0.37 -3.89 16 5 C 0.10 2.34 5.09 -107.01 -0.55 1.79 16 6 C -0.44 -11.39 9.55 -37.83 -0.36 -11.75 16 7 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 8 C 0.08 2.15 5.39 -17.34 -0.09 2.05 16 9 N -0.80 -20.71 13.93 55.54 0.77 -19.94 16 10 Si 0.91 20.39 24.52 -169.99 -4.17 16.22 16 11 H -0.27 -5.90 6.71 56.52 0.38 -5.52 16 12 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.24 -5.62 6.87 56.52 0.39 -5.23 16 14 C -0.22 -5.38 7.23 -38.09 -0.28 -5.66 16 15 C -0.02 -0.48 6.03 -105.40 -0.64 -1.11 16 16 C -0.14 -2.82 10.41 -38.60 -0.40 -3.22 16 17 C 0.02 0.31 7.45 28.81 0.21 0.52 16 18 O -0.46 -6.90 13.64 -18.82 -0.26 -7.16 16 19 S 0.01 0.13 22.61 -107.50 -2.43 -2.30 16 20 C -0.22 -4.63 6.33 -38.05 -0.24 -4.87 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 25 H 0.07 1.03 8.02 -51.92 -0.42 0.61 16 26 H 0.11 2.26 8.03 -52.49 -0.42 1.84 16 27 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 28 H 0.11 2.53 4.71 -52.48 -0.25 2.28 16 29 H 0.14 2.42 8.06 -52.48 -0.42 2.00 16 30 H 0.38 3.69 9.06 45.56 0.41 4.10 16 LS Contribution 269.45 15.07 4.06 4.06 Total: -1.00 -27.78 269.45 -7.42 -35.20 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -2.36 Total: 4.33 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -3.04 Total: -30.41 kcal Atomic # 7 Polarization: -20.71 SS G_CDS: 0.77 Total: -19.94 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.26 Total: -7.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.17 Total: 16.22 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.43 Total: -2.30 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.78 -7.42 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313910.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.894 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds