Wall clock time and date at job start Mon Mar 30 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47128 * 2 1 4 4 C 1.35785 * 119.57656 * 264.99896 * 3 2 1 5 5 C 1.41107 * 120.10530 * 179.97438 * 4 3 2 6 6 C 1.41257 * 120.07388 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99984 * 330.10942 * 6 5 4 8 8 C 1.39860 * 120.00393 * 150.11058 * 6 5 4 9 9 N 1.30899 * 120.00079 * 161.66474 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 341.67318 * 8 6 5 11 11 H 1.48492 * 109.47427 * 95.40445 * 10 8 6 12 12 H 1.48503 * 109.46937 * 215.40742 * 10 8 6 13 13 H 1.48500 * 109.47055 * 335.40265 * 10 8 6 14 14 C 1.39975 * 119.86043 * 359.97438 * 5 4 3 15 15 C 1.40481 * 119.98623 * 0.02562 * 14 5 4 16 16 C 1.45521 * 129.13165 * 180.02562 * 15 14 5 17 17 C 1.32399 * 114.76307 * 179.97438 * 16 15 14 18 18 O 1.35705 * 124.27088 * 179.97438 * 17 16 15 19 19 S 1.75248 * 111.45592 * 359.97438 * 17 16 15 20 20 C 1.40239 * 119.04106 * 359.74218 * 15 14 5 21 21 H 1.08996 * 109.47476 * 299.99743 * 1 2 3 22 22 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47283 * 59.99905 * 1 2 3 24 24 H 1.09004 * 109.47283 * 120.00095 * 2 1 3 25 25 H 1.09007 * 109.47284 * 239.99820 * 2 1 3 26 26 H 1.08001 * 119.94809 * 359.95668 * 4 3 2 27 27 H 0.96996 * 120.00521 * 180.02562 * 9 8 6 28 28 H 1.08003 * 120.00706 * 180.02562 * 14 5 4 29 29 H 1.08005 * 122.62024 * 0.02562 * 16 15 14 30 30 H 0.96693 * 114.00273 * 90.00050 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3527 2.0183 -1.1764 5 6 2.8236 3.3485 -1.1894 6 6 3.1573 3.9693 -2.4136 7 1 3.5209 3.3751 -3.2390 8 6 3.0169 5.3534 -2.5570 9 7 3.6417 5.9781 -3.5227 10 14 1.9379 6.3106 -1.3700 11 1 2.7772 6.8739 -0.2822 12 1 1.2620 7.4155 -2.0965 13 1 0.9165 5.4033 -0.7879 14 6 2.9594 4.0515 0.0133 15 6 2.6276 3.4323 1.2298 16 6 2.6904 3.9693 2.5809 17 6 2.3055 3.1300 3.5297 18 8 2.2876 3.4291 4.8533 19 16 1.8221 1.5841 2.8607 20 6 2.1571 2.1112 1.2152 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 2.2473 1.4746 -2.1036 27 1 3.5447 6.9381 -3.6220 28 1 3.3192 5.0698 0.0060 29 1 3.0242 4.9744 2.7929 30 1 1.4526 3.8088 5.1595 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313910.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:04 Heat of formation + Delta-G solvation = -38.595862 kcal Electronic energy + Delta-G solvation = -15391.217655 eV Core-core repulsion = 12855.346597 eV Total energy + Delta-G solvation = -2535.871058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37494 -39.05224 -36.09602 -35.75312 -33.91212 -30.67286 -29.56295 -27.22179 -24.84521 -23.84093 -22.17504 -21.35028 -19.77439 -18.80735 -17.90772 -17.05858 -16.57472 -16.49736 -15.51043 -15.31859 -14.85585 -14.82008 -14.44144 -14.20374 -13.67543 -13.42216 -13.19129 -12.91635 -12.82228 -12.53698 -12.08695 -11.92053 -11.68715 -11.66119 -11.46214 -11.17285 -10.89048 -10.12973 -9.23868 -8.95447 -8.53959 -6.51758 -0.10755 0.57009 0.59000 1.17079 1.21416 1.25717 1.45353 1.50357 2.09075 2.47124 3.17585 3.36096 3.91001 4.10247 4.34370 4.46323 4.54569 4.58334 4.65830 4.79524 4.83011 4.97839 5.05563 5.14483 5.26602 5.37562 5.42009 5.51973 5.71565 5.84251 6.08757 6.29328 6.52884 6.61506 6.76352 8.12203 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.009326 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.520970 B = 3001.792467 C = 3973.133454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.020 4.020 4 C -0.176 4.176 5 C 0.082 3.918 6 C -0.474 4.474 7 H 0.067 0.933 8 C 0.053 3.947 9 N -0.841 5.841 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.275 1.275 13 H -0.256 1.256 14 C -0.244 4.244 15 C -0.037 4.037 16 C -0.174 4.174 17 C 0.041 3.959 18 O -0.459 6.459 19 S 0.062 5.938 20 C -0.233 4.233 21 H 0.049 0.951 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.295 0.705 28 H 0.097 0.903 29 H 0.149 0.851 30 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 -5.596 11.088 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 C -0.024 4.024 4 C -0.196 4.196 5 C 0.078 3.922 6 C -0.504 4.504 7 H 0.085 0.915 8 C -0.163 4.163 9 N -0.467 5.467 10 Si 0.785 3.215 11 H -0.188 1.188 12 H -0.202 1.202 13 H -0.180 1.180 14 C -0.266 4.266 15 C -0.043 4.043 16 C -0.207 4.207 17 C -0.119 4.119 18 O -0.272 6.272 19 S 0.321 5.679 20 C -0.347 4.347 21 H 0.068 0.932 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.138 0.862 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.167 0.833 30 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.758 -6.903 11.595 15.092 hybrid contribution 0.150 2.401 -0.708 2.508 sum -6.608 -4.502 10.887 13.508 Atomic orbital electron populations 1.21686 0.93632 1.02658 1.01735 1.20627 0.97228 0.91044 1.03150 1.19019 0.97122 0.96196 0.90029 1.20870 1.05684 0.96132 0.96954 1.17659 0.89227 0.93066 0.92224 1.19445 1.39352 0.92914 0.98648 0.91502 1.26736 0.94650 0.98382 0.96535 1.69738 1.34081 1.12091 1.30805 0.85531 0.79962 0.77824 0.78209 1.18850 1.20198 1.18008 1.20774 1.14446 1.00354 0.90998 1.18894 0.99146 0.93484 0.92773 1.21540 1.06655 1.01761 0.90789 1.21937 1.06487 0.96540 0.86896 1.84750 1.42351 1.83122 1.16944 1.83345 1.72461 1.15362 0.96782 1.22085 1.18008 0.98058 0.96572 0.93222 0.90009 0.93148 0.90849 0.89923 0.86160 0.89448 0.88504 0.83334 0.72688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.89 71.98 0.71 -2.91 16 2 C -0.08 -2.47 5.85 29.84 0.17 -2.30 16 3 C -0.02 -0.77 5.12 -19.93 -0.10 -0.88 16 4 C -0.18 -7.83 9.30 22.40 0.21 -7.62 16 5 C 0.08 4.15 5.09 -21.41 -0.11 4.04 16 6 C -0.47 -26.06 9.55 23.41 0.22 -25.84 16 7 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 8 C 0.05 2.80 5.39 85.22 0.46 3.26 16 9 N -0.84 -45.47 13.93 21.81 0.30 -45.17 16 10 Si 0.96 43.13 24.52 68.60 1.68 44.81 16 11 H -0.26 -11.37 6.71 99.48 0.67 -10.70 16 12 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.26 -11.89 6.87 99.48 0.68 -11.20 16 14 C -0.24 -11.92 7.23 23.24 0.17 -11.75 16 15 C -0.04 -1.62 6.03 -20.37 -0.12 -1.74 16 16 C -0.17 -6.46 10.41 23.04 0.24 -6.22 16 17 C 0.04 1.32 7.45 66.71 0.50 1.82 16 18 O -0.46 -11.53 13.64 -90.26 -1.23 -12.76 16 19 S 0.06 2.00 22.61 -56.49 -1.28 0.73 16 20 C -0.23 -9.39 6.33 23.26 0.15 -9.24 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.07 2.04 7.75 -2.38 -0.02 2.02 16 25 H 0.08 2.25 8.02 -2.38 -0.02 2.23 16 26 H 0.12 4.99 8.03 -2.91 -0.02 4.97 16 27 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 28 H 0.10 4.78 4.71 -2.91 -0.01 4.77 16 29 H 0.15 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.41 5.75 9.06 -74.06 -0.67 5.08 16 Total: -1.00 -61.15 269.45 2.41 -58.74 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.44 Total: 13.03 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 2.50 Total: -59.39 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.30 Total: -45.17 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.23 Total: -12.76 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.68 Total: 44.81 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.28 Total: 0.73 kcal Total: -61.15 2.41 -58.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313910.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.144 kcal (2) G-P(sol) polarization free energy of solvation -61.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds