Wall clock time and date at job start Mon Mar 30 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46935 * 2 1 4 4 S 1.69979 * 124.02008 * 275.41252 * 3 2 1 5 5 C 1.75793 * 93.23266 * 180.22668 * 4 3 2 6 6 C 1.39773 * 130.14057 * 179.75691 * 5 4 3 7 7 C 1.38113 * 120.32626 * 180.02562 * 6 5 4 8 8 O 1.35893 * 119.96711 * 179.97438 * 7 6 5 9 9 C 1.39148 * 120.06444 * 0.02562 * 7 6 5 10 10 C 1.37316 * 120.21326 * 359.97438 * 9 7 6 11 11 C 1.39367 * 110.18677 * 359.80014 * 5 4 3 12 12 C 1.36448 * 124.02097 * 95.26412 * 3 2 1 13 13 C 1.40797 * 123.29515 * 359.97438 * 12 3 2 14 14 H 1.08006 * 119.99923 * 316.57017 * 13 12 3 15 15 C 1.39700 * 120.00229 * 136.58430 * 13 12 3 16 16 N 1.31082 * 120.00214 * 157.10388 * 15 13 12 17 17 Si 1.86802 * 119.99901 * 337.37160 * 15 13 12 18 18 H 1.48501 * 109.47099 * 94.42064 * 17 15 13 19 19 H 1.48497 * 109.47316 * 214.42566 * 17 15 13 20 20 H 1.48505 * 109.47050 * 334.42394 * 17 15 13 21 21 H 1.09002 * 109.46763 * 183.98078 * 1 2 3 22 22 H 1.08995 * 109.47387 * 303.98125 * 1 2 3 23 23 H 1.08995 * 109.46990 * 63.98792 * 1 2 3 24 24 H 1.09000 * 109.47131 * 239.99970 * 2 1 3 25 25 H 1.09003 * 109.46909 * 119.99852 * 2 1 3 26 26 H 1.07997 * 119.83767 * 0.02577 * 6 5 4 27 27 H 0.96706 * 114.00402 * 270.01870 * 8 7 6 28 28 H 1.08002 * 119.89392 * 179.97438 * 9 7 6 29 29 H 1.07998 * 119.79781 * 180.02562 * 10 9 7 30 30 H 0.97000 * 120.00060 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.2240 2.3617 -1.4026 5 6 2.8139 3.7550 -0.5074 6 6 3.2209 5.0122 -0.9629 7 6 3.6550 5.9709 -0.0685 8 8 4.0496 7.1906 -0.5194 9 6 3.6897 5.6888 1.2936 10 6 3.2927 4.4577 1.7546 11 6 2.8480 3.4710 0.8566 12 6 2.3846 2.1060 1.1262 13 6 2.3155 1.5545 2.4198 14 1 1.4536 0.9738 2.7139 15 6 3.3615 1.7587 3.3230 16 7 3.1433 1.6603 4.6118 17 14 5.0696 2.1792 2.6944 18 1 5.2446 3.6538 2.6857 19 1 6.0890 1.5649 3.5823 20 1 5.2329 1.6533 1.3152 21 1 -0.3633 -1.0252 0.0713 22 1 -0.3634 0.5743 0.8521 23 1 -0.3633 0.4507 -0.9235 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.1959 5.2350 -2.0193 27 1 4.9913 7.2456 -0.7323 28 1 4.0301 6.4404 1.9905 29 1 3.3220 4.2461 2.8133 30 1 3.8697 1.8016 5.2389 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396313916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:58 Heat of formation + Delta-G solvation = -19.176798 kcal Electronic energy + Delta-G solvation = -15649.285458 eV Core-core repulsion = 13114.256473 eV Total energy + Delta-G solvation = -2535.028985 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27226 -37.10824 -34.78596 -33.07450 -31.43214 -30.34817 -27.60185 -26.03147 -23.01921 -22.19947 -20.85248 -19.39369 -18.15555 -17.10106 -15.90828 -15.33505 -15.07986 -14.71887 -14.30878 -13.44520 -13.30813 -13.02583 -12.86532 -12.48165 -12.16866 -11.80330 -11.45909 -11.39037 -11.02470 -10.80412 -10.57053 -10.28130 -10.04600 -9.83488 -9.63438 -9.56558 -9.20286 -8.46933 -7.47156 -6.91030 -6.74904 -4.41205 1.48335 1.80325 2.53483 2.91377 3.13518 3.22645 3.35901 3.43689 3.98453 4.18237 4.63103 4.95425 5.39444 5.51223 5.77998 5.93899 5.98794 6.03295 6.22043 6.25558 6.41466 6.51526 6.67221 6.83942 6.86463 6.94917 7.01974 7.04592 7.22066 7.32603 7.86837 7.97608 8.31842 8.53642 8.81930 10.13948 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.012893 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.256479 B = 2171.158429 C = 3389.366872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.015 4.015 3 C -0.350 4.350 4 S 0.063 5.937 5 C -0.124 4.124 6 C -0.125 4.125 7 C 0.100 3.900 8 O -0.500 6.500 9 C -0.166 4.166 10 C -0.054 4.054 11 C -0.078 4.078 12 C 0.085 3.915 13 C -0.448 4.448 14 H 0.094 0.906 15 C 0.094 3.906 16 N -0.814 5.814 17 Si 0.871 3.129 18 H -0.251 1.251 19 H -0.283 1.283 20 H -0.251 1.251 21 H 0.041 0.959 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.382 0.618 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 3.608 -6.769 8.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.055 4.055 3 C -0.467 4.467 4 S 0.328 5.672 5 C -0.239 4.239 6 C -0.149 4.149 7 C 0.054 3.946 8 O -0.309 6.309 9 C -0.188 4.188 10 C -0.074 4.074 11 C -0.088 4.088 12 C 0.075 3.925 13 C -0.480 4.480 14 H 0.112 0.888 15 C -0.124 4.124 16 N -0.440 5.440 17 Si 0.696 3.304 18 H -0.176 1.176 19 H -0.210 1.210 20 H -0.174 1.174 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.139 0.861 27 H 0.236 0.764 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.798 3.334 -7.917 8.777 hybrid contribution 1.512 0.393 1.413 2.107 sum 3.310 3.727 -6.504 8.195 Atomic orbital electron populations 1.21773 0.96949 0.99886 1.01373 1.19489 0.93931 0.91175 1.00891 1.22950 1.28685 1.00883 0.94150 1.81819 1.70152 1.04143 1.11069 1.22469 1.05693 0.98254 0.97515 1.20510 1.04192 0.91117 0.99092 1.18048 1.01008 0.84380 0.91175 1.84811 1.29967 1.29321 1.86834 1.21002 1.05671 0.97334 0.94828 1.20946 0.95093 0.91410 0.99919 1.19800 1.01338 0.95951 0.91662 1.17390 0.93243 0.87934 0.93910 1.18628 1.05572 1.30692 0.93118 0.88816 1.25867 1.00783 0.91786 0.93920 1.69861 1.34286 1.37394 1.02443 0.87025 0.81933 0.80428 0.81063 1.17604 1.20970 1.17405 0.93958 0.92596 0.93810 0.93740 0.90691 0.86121 0.76384 0.85939 0.85217 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 37.16 0.37 -2.19 16 2 C -0.02 -0.31 6.10 -27.88 -0.17 -0.48 16 3 C -0.35 -7.95 5.56 -34.95 -0.19 -8.14 16 4 S 0.06 1.29 22.89 -107.50 -2.46 -1.17 16 5 C -0.12 -2.65 6.44 -38.59 -0.25 -2.90 16 6 C -0.12 -2.34 10.00 -39.05 -0.39 -2.74 16 7 C 0.10 1.80 6.69 -39.29 -0.26 1.54 16 8 O -0.50 -7.45 13.50 -19.40 -0.26 -7.72 16 9 C -0.17 -3.16 9.95 -39.58 -0.39 -3.55 16 10 C -0.05 -1.18 6.66 -39.01 -0.26 -1.44 16 11 C -0.08 -1.82 4.78 -105.18 -0.50 -2.32 16 12 C 0.08 2.10 4.64 -106.18 -0.49 1.61 16 13 C -0.45 -11.77 8.51 -38.07 -0.32 -12.10 16 14 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 15 C 0.09 2.40 4.58 -17.33 -0.08 2.32 16 16 N -0.81 -21.28 13.94 55.54 0.77 -20.50 16 17 Si 0.87 19.90 24.46 -169.99 -4.16 15.74 16 18 H -0.25 -5.40 5.61 56.52 0.32 -5.09 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.59 7.40 -51.93 -0.38 1.21 16 26 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.38 3.70 9.06 45.56 0.41 4.12 16 28 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.13 2.91 5.84 -52.49 -0.31 2.60 16 30 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 LS Contribution 265.77 15.07 4.01 4.01 Total: -1.00 -27.91 265.77 -7.51 -35.41 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -2.46 Total: 4.62 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -2.95 Total: -30.39 kcal Atomic # 7 Polarization: -21.28 SS G_CDS: 0.77 Total: -20.50 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.26 Total: -7.72 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.16 Total: 15.74 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.46 Total: -1.17 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.91 -7.51 -35.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.238 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds