Wall clock time and date at job start Mon Mar 30 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46935 * 2 1 4 4 S 1.69979 * 124.02008 * 275.41252 * 3 2 1 5 5 C 1.75793 * 93.23266 * 180.22668 * 4 3 2 6 6 C 1.39773 * 130.14057 * 179.75691 * 5 4 3 7 7 C 1.38113 * 120.32626 * 180.02562 * 6 5 4 8 8 O 1.35893 * 119.96711 * 179.97438 * 7 6 5 9 9 C 1.39148 * 120.06444 * 0.02562 * 7 6 5 10 10 C 1.37316 * 120.21326 * 359.97438 * 9 7 6 11 11 C 1.39367 * 110.18677 * 359.80014 * 5 4 3 12 12 C 1.36448 * 124.02097 * 95.26412 * 3 2 1 13 13 C 1.40797 * 123.29515 * 359.97438 * 12 3 2 14 14 H 1.08006 * 119.99923 * 316.57017 * 13 12 3 15 15 C 1.39700 * 120.00229 * 136.58430 * 13 12 3 16 16 N 1.31082 * 120.00214 * 157.10388 * 15 13 12 17 17 Si 1.86802 * 119.99901 * 337.37160 * 15 13 12 18 18 H 1.48501 * 109.47099 * 94.42064 * 17 15 13 19 19 H 1.48497 * 109.47316 * 214.42566 * 17 15 13 20 20 H 1.48505 * 109.47050 * 334.42394 * 17 15 13 21 21 H 1.09002 * 109.46763 * 183.98078 * 1 2 3 22 22 H 1.08995 * 109.47387 * 303.98125 * 1 2 3 23 23 H 1.08995 * 109.46990 * 63.98792 * 1 2 3 24 24 H 1.09000 * 109.47131 * 239.99970 * 2 1 3 25 25 H 1.09003 * 109.46909 * 119.99852 * 2 1 3 26 26 H 1.07997 * 119.83767 * 0.02577 * 6 5 4 27 27 H 0.96706 * 114.00402 * 270.01870 * 8 7 6 28 28 H 1.08002 * 119.89392 * 179.97438 * 9 7 6 29 29 H 1.07998 * 119.79781 * 180.02562 * 10 9 7 30 30 H 0.97000 * 120.00060 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.2240 2.3617 -1.4026 5 6 2.8139 3.7550 -0.5074 6 6 3.2209 5.0122 -0.9629 7 6 3.6550 5.9709 -0.0685 8 8 4.0496 7.1906 -0.5194 9 6 3.6897 5.6888 1.2936 10 6 3.2927 4.4577 1.7546 11 6 2.8480 3.4710 0.8566 12 6 2.3846 2.1060 1.1262 13 6 2.3155 1.5545 2.4198 14 1 1.4536 0.9738 2.7139 15 6 3.3615 1.7587 3.3230 16 7 3.1433 1.6603 4.6118 17 14 5.0696 2.1792 2.6944 18 1 5.2446 3.6538 2.6857 19 1 6.0890 1.5649 3.5823 20 1 5.2329 1.6533 1.3152 21 1 -0.3633 -1.0252 0.0713 22 1 -0.3634 0.5743 0.8521 23 1 -0.3633 0.4507 -0.9235 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.1959 5.2350 -2.0193 27 1 4.9913 7.2456 -0.7323 28 1 4.0301 6.4404 1.9905 29 1 3.3220 4.2461 2.8133 30 1 3.8697 1.8016 5.2389 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:58 Heat of formation + Delta-G solvation = -36.930677 kcal Electronic energy + Delta-G solvation = -15650.055324 eV Core-core repulsion = 13114.256473 eV Total energy + Delta-G solvation = -2535.798851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77446 -38.57601 -36.36778 -34.91883 -33.02014 -31.91055 -29.25031 -27.79264 -24.58233 -23.77424 -22.44421 -21.17391 -19.55671 -18.85665 -17.48301 -17.03220 -16.63123 -16.27602 -15.82412 -15.05855 -14.94161 -14.77624 -14.47724 -14.10056 -13.74235 -13.36894 -13.19812 -12.98254 -12.72168 -12.37912 -12.18846 -12.03515 -11.72868 -11.40852 -11.28812 -11.17054 -11.01259 -10.13512 -9.07620 -8.80818 -8.44501 -6.34458 -0.09855 0.24855 0.92299 1.14355 1.27604 1.40303 1.59815 1.66770 2.13672 2.56628 3.07760 3.31088 3.87120 4.03325 4.23157 4.38132 4.45520 4.50138 4.64880 4.74447 4.95001 4.98884 5.12697 5.23570 5.27076 5.34727 5.41580 5.43534 5.51619 5.80051 6.06331 6.28243 6.65902 6.87514 6.89157 8.29034 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.012893 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.256479 B = 2171.158429 C = 3389.366872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.022 4.022 3 C -0.351 4.351 4 S 0.113 5.887 5 C -0.143 4.143 6 C -0.123 4.123 7 C 0.120 3.880 8 O -0.496 6.496 9 C -0.159 4.159 10 C -0.076 4.076 11 C -0.110 4.110 12 C 0.056 3.944 13 C -0.474 4.474 14 H 0.056 0.944 15 C 0.065 3.935 16 N -0.856 5.856 17 Si 0.920 3.080 18 H -0.229 1.229 19 H -0.275 1.275 20 H -0.270 1.270 21 H 0.069 0.931 22 H 0.030 0.970 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.150 0.850 27 H 0.411 0.589 28 H 0.150 0.850 29 H 0.114 0.886 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 5.441 -9.321 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 C -0.467 4.467 4 S 0.378 5.622 5 C -0.259 4.259 6 C -0.147 4.147 7 C 0.073 3.927 8 O -0.309 6.309 9 C -0.181 4.181 10 C -0.095 4.095 11 C -0.119 4.119 12 C 0.046 3.954 13 C -0.508 4.508 14 H 0.074 0.926 15 C -0.148 4.148 16 N -0.485 5.485 17 Si 0.742 3.258 18 H -0.153 1.153 19 H -0.201 1.201 20 H -0.195 1.195 21 H 0.088 0.912 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.168 0.832 27 H 0.270 0.730 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.833 5.188 -10.481 12.033 hybrid contribution 1.141 -0.086 2.003 2.307 sum 3.975 5.102 -8.478 10.663 Atomic orbital electron populations 1.21673 0.95103 1.01409 1.00903 1.19618 0.95541 0.89996 1.01004 1.23575 1.25441 1.02202 0.95495 1.81471 1.69506 1.02708 1.08527 1.22752 1.06410 0.99777 0.96912 1.20830 1.03029 0.90015 1.00784 1.18003 0.99309 0.84844 0.90540 1.84753 1.32529 1.27192 1.86454 1.21310 1.04087 0.96545 0.96144 1.20935 0.96849 0.92662 0.99099 1.19812 1.03414 0.95570 0.93130 1.17582 0.94889 0.89224 0.93728 1.18507 1.05278 1.32079 0.94895 0.92590 1.26357 1.03041 0.91576 0.93814 1.69892 1.35393 1.39916 1.03282 0.86295 0.78754 0.81470 0.79263 1.15291 1.20134 1.19481 0.91227 0.95078 0.92422 0.91387 0.92768 0.83202 0.73025 0.83274 0.86846 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.89 71.98 0.71 -4.00 16 2 C -0.02 -0.89 6.10 29.85 0.18 -0.71 16 3 C -0.35 -15.91 5.56 25.27 0.14 -15.77 16 4 S 0.11 4.34 22.89 -56.49 -1.29 3.04 16 5 C -0.14 -5.83 6.44 22.91 0.15 -5.68 16 6 C -0.12 -4.13 10.00 22.61 0.23 -3.90 16 7 C 0.12 3.81 6.69 22.46 0.15 3.96 16 8 O -0.50 -12.12 13.50 -92.34 -1.25 -13.36 16 9 C -0.16 -5.57 9.95 22.27 0.22 -5.35 16 10 C -0.08 -3.25 6.66 22.64 0.15 -3.10 16 11 C -0.11 -5.11 4.78 -20.22 -0.10 -5.21 16 12 C 0.06 2.83 4.64 -20.87 -0.10 2.73 16 13 C -0.47 -26.46 8.51 23.25 0.20 -26.26 16 14 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 15 C 0.07 3.50 4.58 85.16 0.39 3.89 16 16 N -0.86 -47.05 13.94 21.80 0.30 -46.75 16 17 Si 0.92 41.90 24.46 68.60 1.68 43.57 16 18 H -0.23 -9.51 5.61 99.48 0.56 -8.95 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 21 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 24 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.05 2.39 7.40 -2.39 -0.02 2.37 16 26 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 27 H 0.41 5.54 9.06 -74.05 -0.67 4.87 16 28 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.11 5.17 5.84 -2.91 -0.02 5.15 16 30 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -62.29 265.77 2.12 -60.18 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.35 Total: 12.71 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 2.33 Total: -59.39 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.30 Total: -46.75 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.25 Total: -13.36 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.68 Total: 43.57 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.29 Total: 3.04 kcal Total: -62.29 2.12 -60.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.246 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds