Wall clock time and date at job start Mon Mar 30 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47199 * 2 1 4 4 C 1.37474 * 119.89474 * 265.23443 * 3 2 1 5 5 C 1.38765 * 120.98926 * 180.25687 * 4 3 2 6 6 O 1.35697 * 119.34987 * 179.75546 * 5 4 3 7 7 C 1.40290 * 121.30373 * 359.47880 * 5 4 3 8 8 S 1.76060 * 130.59349 * 180.24638 * 7 5 4 9 9 C 1.75523 * 91.49793 * 180.02562 * 8 7 5 10 10 C 1.32675 * 110.61921 * 0.02562 * 9 8 7 11 11 C 1.39429 * 120.05020 * 0.27601 * 7 5 4 12 12 C 1.40375 * 119.89893 * 84.99799 * 3 2 1 13 13 C 1.40475 * 120.33195 * 0.02562 * 12 3 2 14 14 H 1.08007 * 120.00135 * 320.44487 * 13 12 3 15 15 C 1.39900 * 120.00175 * 140.44839 * 13 12 3 16 16 N 1.30915 * 119.99822 * 339.73057 * 15 13 12 17 17 Si 1.86803 * 120.00400 * 159.73408 * 15 13 12 18 18 H 1.48504 * 109.46945 * 59.99658 * 17 15 13 19 19 H 1.48499 * 109.47515 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46989 * 299.99896 * 17 15 13 21 21 H 1.08998 * 109.47039 * 299.99865 * 1 2 3 22 22 H 1.08998 * 109.47287 * 60.00480 * 1 2 3 23 23 H 1.08999 * 109.46835 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47486 * 239.99297 * 2 1 3 25 25 H 1.08998 * 109.47287 * 119.99520 * 2 1 3 26 26 H 1.08008 * 119.50557 * 0.03032 * 4 3 2 27 27 H 0.96704 * 113.99938 * 269.73322 * 6 5 4 28 28 H 1.07995 * 124.69105 * 179.97438 * 9 8 7 29 29 H 1.08006 * 122.09537 * 180.02562 * 10 9 8 30 30 H 0.97010 * 119.99966 * 180.38599 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3541 2.0338 -1.1877 5 6 2.8237 3.3393 -1.2137 6 8 3.1360 3.9102 -2.4044 7 6 2.9764 4.0826 -0.0337 8 16 3.5367 5.7328 0.2163 9 6 3.3252 5.5905 1.9529 10 6 2.8702 4.3855 2.2710 11 6 2.6599 3.5105 1.1978 12 6 2.1655 2.1159 1.2123 13 6 1.8333 1.4936 2.4271 14 1 0.9670 0.8512 2.4856 15 6 2.6246 1.7058 3.5611 16 7 3.8549 2.1336 3.4301 17 14 1.9256 1.3788 5.2623 18 1 1.5241 -0.0471 5.3668 19 1 2.9574 1.6783 6.2875 20 1 0.7399 2.2446 5.4851 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 2.2432 1.4898 -2.1142 27 1 4.0563 3.7826 -2.6724 28 1 3.5370 6.3751 2.6642 29 1 2.6733 4.0979 3.2932 30 1 4.4054 2.2754 4.2162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396313940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:58 Heat of formation + Delta-G solvation = -18.321232 kcal Electronic energy + Delta-G solvation = -15806.239250 eV Core-core repulsion = 13271.247366 eV Total energy + Delta-G solvation = -2534.991884 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.59680 -36.37032 -34.85807 -33.59739 -31.23843 -29.10211 -27.71745 -24.95339 -23.12269 -21.94209 -20.70500 -18.57169 -17.89589 -17.16559 -15.76242 -15.29555 -14.76655 -14.17414 -13.79456 -13.39259 -13.15732 -12.91289 -12.49368 -11.97279 -11.82493 -11.49466 -11.45183 -11.20022 -11.12220 -10.83987 -10.59252 -10.19555 -9.95637 -9.83859 -9.66592 -9.26121 -9.04769 -8.06259 -7.23443 -7.10597 -6.48500 -4.54294 1.91311 2.49097 2.70384 2.94768 2.95193 3.01058 3.12625 3.59990 3.75757 4.34859 5.15049 5.41457 5.80148 5.89139 5.99505 6.14636 6.25317 6.43952 6.52400 6.59862 6.74836 6.80760 6.87218 6.96535 7.03247 7.16561 7.29473 7.54208 7.64590 7.71697 7.95105 8.18348 8.49037 8.57636 8.79422 9.92318 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.011717 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.599277 B = 2389.103748 C = 3655.560254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.198 4.198 4 C -0.065 4.065 5 C -0.018 4.018 6 O -0.498 6.498 7 C -0.100 4.100 8 S 0.010 5.990 9 C -0.274 4.274 10 C -0.031 4.031 11 C -0.127 4.127 12 C 0.172 3.828 13 C -0.452 4.452 14 H 0.092 0.908 15 C 0.080 3.920 16 N -0.768 5.768 17 Si 0.900 3.100 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.260 1.260 21 H 0.056 0.944 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.354 0.646 28 H 0.144 0.856 29 H 0.127 0.873 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -0.404 -0.755 1.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C -0.202 4.202 4 C -0.086 4.086 5 C -0.068 4.068 6 O -0.305 6.305 7 C -0.216 4.216 8 S 0.271 5.729 9 C -0.407 4.407 10 C -0.061 4.061 11 C -0.134 4.134 12 C 0.167 3.833 13 C -0.479 4.479 14 H 0.110 0.890 15 C -0.142 4.142 16 N -0.391 5.391 17 Si 0.723 3.277 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.184 1.184 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.206 0.794 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.726 1.055 -1.456 1.939 hybrid contribution 0.021 -1.239 1.783 2.171 sum -0.705 -0.184 0.327 0.799 Atomic orbital electron populations 1.21758 0.96868 0.99767 1.01676 1.20062 0.94405 0.93734 1.00880 1.19384 1.12697 0.95876 0.92236 1.20509 0.98758 0.92372 0.96937 1.17044 1.14914 0.92719 0.82144 1.84865 1.31345 1.77925 1.36334 1.22729 1.05778 0.96049 0.97029 1.83459 1.73051 1.12878 1.03553 1.24694 1.16701 1.02237 0.97057 1.19795 0.95647 0.91025 0.99594 1.18983 1.09942 0.94808 0.89672 1.18220 0.85401 0.87513 0.92145 1.19403 1.10473 1.25081 0.92987 0.88976 1.25944 0.94080 0.92775 1.01399 1.69891 1.05781 1.30176 1.33209 0.86479 0.80127 0.80426 0.80651 1.18586 1.20062 1.18396 0.92454 0.93655 0.94091 0.93601 0.91245 0.87926 0.79400 0.83843 0.85544 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.82 37.16 0.36 -2.10 16 2 C -0.05 -1.03 5.45 -27.88 -0.15 -1.18 16 3 C -0.20 -4.51 5.17 -104.10 -0.54 -5.05 16 4 C -0.06 -1.44 9.50 -39.67 -0.38 -1.81 16 5 C -0.02 -0.42 6.72 -38.62 -0.26 -0.68 16 6 O -0.50 -10.31 13.43 -18.80 -0.25 -10.56 16 7 C -0.10 -2.43 6.43 -38.37 -0.25 -2.68 16 8 S 0.01 0.22 23.26 -107.50 -2.50 -2.28 16 9 C -0.27 -5.87 11.11 28.84 0.32 -5.54 16 10 C -0.03 -0.74 8.26 -40.79 -0.34 -1.08 16 11 C -0.13 -3.19 5.51 -104.78 -0.58 -3.77 16 12 C 0.17 4.27 5.50 -104.26 -0.57 3.70 16 13 C -0.45 -10.78 7.62 -38.12 -0.29 -11.07 16 14 H 0.09 2.09 6.46 -52.48 -0.34 1.75 16 15 C 0.08 1.82 3.84 -17.32 -0.07 1.75 16 16 N -0.77 -18.41 10.83 55.55 0.60 -17.81 16 17 Si 0.90 17.13 29.61 -169.99 -5.03 12.10 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 H 0.06 1.04 7.08 -51.93 -0.37 0.67 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.80 8.04 -51.93 -0.42 0.38 16 25 H 0.07 1.39 7.25 -51.93 -0.38 1.01 16 26 H 0.10 2.02 8.05 -52.48 -0.42 1.60 16 27 H 0.35 5.81 9.06 45.56 0.41 6.22 16 28 H 0.14 2.63 8.06 -52.49 -0.42 2.20 16 29 H 0.13 2.96 6.08 -52.48 -0.32 2.64 16 30 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 268.04 15.07 4.04 4.04 Total: -1.00 -26.75 268.04 -8.11 -34.86 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.23 Total: 9.15 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -2.73 Total: -29.50 kcal Atomic # 7 Polarization: -18.41 SS G_CDS: 0.60 Total: -17.81 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.25 Total: -10.56 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.50 Total: -2.28 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.75 -8.11 -34.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.542 kcal (2) G-P(sol) polarization free energy of solvation -26.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds