Wall clock time and date at job start Mon Mar 30 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47199 * 2 1 4 4 C 1.37474 * 119.89474 * 265.23443 * 3 2 1 5 5 C 1.38765 * 120.98926 * 180.25687 * 4 3 2 6 6 O 1.35697 * 119.34987 * 179.75546 * 5 4 3 7 7 C 1.40290 * 121.30373 * 359.47880 * 5 4 3 8 8 S 1.76060 * 130.59349 * 180.24638 * 7 5 4 9 9 C 1.75523 * 91.49793 * 180.02562 * 8 7 5 10 10 C 1.32675 * 110.61921 * 0.02562 * 9 8 7 11 11 C 1.39429 * 120.05020 * 0.27601 * 7 5 4 12 12 C 1.40375 * 119.89893 * 84.99799 * 3 2 1 13 13 C 1.40475 * 120.33195 * 0.02562 * 12 3 2 14 14 H 1.08007 * 120.00135 * 320.44487 * 13 12 3 15 15 C 1.39900 * 120.00175 * 140.44839 * 13 12 3 16 16 N 1.30915 * 119.99822 * 339.73057 * 15 13 12 17 17 Si 1.86803 * 120.00400 * 159.73408 * 15 13 12 18 18 H 1.48504 * 109.46945 * 59.99658 * 17 15 13 19 19 H 1.48499 * 109.47515 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46989 * 299.99896 * 17 15 13 21 21 H 1.08998 * 109.47039 * 299.99865 * 1 2 3 22 22 H 1.08998 * 109.47287 * 60.00480 * 1 2 3 23 23 H 1.08999 * 109.46835 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47486 * 239.99297 * 2 1 3 25 25 H 1.08998 * 109.47287 * 119.99520 * 2 1 3 26 26 H 1.08008 * 119.50557 * 0.03032 * 4 3 2 27 27 H 0.96704 * 113.99938 * 269.73322 * 6 5 4 28 28 H 1.07995 * 124.69105 * 179.97438 * 9 8 7 29 29 H 1.08006 * 122.09537 * 180.02562 * 10 9 8 30 30 H 0.97010 * 119.99966 * 180.38599 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3541 2.0338 -1.1877 5 6 2.8237 3.3393 -1.2137 6 8 3.1360 3.9102 -2.4044 7 6 2.9764 4.0826 -0.0337 8 16 3.5367 5.7328 0.2163 9 6 3.3252 5.5905 1.9529 10 6 2.8702 4.3855 2.2710 11 6 2.6599 3.5105 1.1978 12 6 2.1655 2.1159 1.2123 13 6 1.8333 1.4936 2.4271 14 1 0.9670 0.8512 2.4856 15 6 2.6246 1.7058 3.5611 16 7 3.8549 2.1336 3.4301 17 14 1.9256 1.3788 5.2623 18 1 1.5241 -0.0471 5.3668 19 1 2.9574 1.6783 6.2875 20 1 0.7399 2.2446 5.4851 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 2.2432 1.4898 -2.1142 27 1 4.0563 3.7826 -2.6724 28 1 3.5370 6.3751 2.6642 29 1 2.6733 4.0979 3.2932 30 1 4.4054 2.2754 4.2162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:58 Heat of formation + Delta-G solvation = -33.214911 kcal Electronic energy + Delta-G solvation = -15806.885088 eV Core-core repulsion = 13271.247366 eV Total energy + Delta-G solvation = -2535.637723 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31119 -38.04999 -36.52852 -35.31644 -32.83324 -30.84125 -29.39256 -26.68689 -24.74981 -23.62283 -22.39476 -20.29125 -19.63018 -18.84209 -17.47932 -16.97907 -16.41477 -15.86313 -15.46137 -14.97038 -14.78375 -14.47747 -14.16425 -13.60881 -13.44651 -13.11301 -13.03632 -12.90610 -12.71068 -12.39339 -12.11394 -11.84003 -11.54628 -11.48225 -11.34173 -10.95023 -10.76007 -9.81360 -8.98190 -8.81975 -8.20843 -6.31684 0.15555 0.74491 0.98360 1.36697 1.39955 1.46120 1.50255 1.85097 2.17432 2.62655 3.41452 3.75704 4.19666 4.31964 4.48795 4.56519 4.78754 4.79228 4.86563 5.09246 5.13968 5.18796 5.21799 5.32187 5.44710 5.52743 5.60011 5.85440 5.88732 6.00330 6.21705 6.41699 6.79612 6.82596 7.16742 8.24341 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.011717 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.599277 B = 2389.103748 C = 3655.560254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.207 4.207 4 C -0.075 4.075 5 C -0.023 4.023 6 O -0.501 6.501 7 C -0.137 4.137 8 S 0.044 5.956 9 C -0.265 4.265 10 C -0.055 4.055 11 C -0.153 4.153 12 C 0.139 3.861 13 C -0.472 4.472 14 H 0.095 0.905 15 C 0.049 3.951 16 N -0.800 5.800 17 Si 0.964 3.036 18 H -0.255 1.255 19 H -0.270 1.270 20 H -0.261 1.261 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.127 0.873 27 H 0.376 0.624 28 H 0.175 0.825 29 H 0.121 0.879 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -0.525 -0.778 1.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C -0.210 4.210 4 C -0.096 4.096 5 C -0.074 4.074 6 O -0.310 6.310 7 C -0.252 4.252 8 S 0.304 5.696 9 C -0.398 4.398 10 C -0.085 4.085 11 C -0.160 4.160 12 C 0.135 3.865 13 C -0.500 4.500 14 H 0.113 0.887 15 C -0.170 4.170 16 N -0.424 5.424 17 Si 0.784 3.216 18 H -0.179 1.179 19 H -0.194 1.194 20 H -0.185 1.185 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.230 0.770 28 H 0.192 0.808 29 H 0.139 0.861 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.981 0.932 -1.501 2.020 hybrid contribution 0.154 -1.148 1.670 2.032 sum -0.827 -0.215 0.170 0.871 Atomic orbital electron populations 1.21679 0.95189 1.01454 1.01007 1.20088 0.95804 0.91769 1.01199 1.19832 1.11896 0.97358 0.91936 1.20785 0.98568 0.92441 0.97774 1.17258 1.14544 0.93031 0.82521 1.84776 1.33193 1.77803 1.35252 1.23109 1.06930 0.97856 0.97331 1.83194 1.72394 1.10917 1.03052 1.25118 1.14525 1.02168 0.97978 1.19829 0.97532 0.91901 0.99225 1.19331 1.10640 0.95468 0.90564 1.18635 0.86493 0.88022 0.93389 1.19588 1.10915 1.25802 0.93661 0.88734 1.26611 0.93919 0.92116 1.04381 1.69941 1.06884 1.31220 1.34311 0.85511 0.79277 0.80390 0.76377 1.17885 1.19430 1.18489 0.94043 0.93362 0.91198 0.91624 0.92453 0.85559 0.76954 0.80754 0.86108 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.82 71.98 0.71 -3.77 16 2 C -0.05 -1.93 5.45 29.85 0.16 -1.77 16 3 C -0.21 -9.39 5.17 -19.52 -0.10 -9.49 16 4 C -0.07 -3.27 9.50 22.22 0.21 -3.06 16 5 C -0.02 -1.06 6.72 22.90 0.15 -0.90 16 6 O -0.50 -20.00 13.43 -90.17 -1.21 -21.21 16 7 C -0.14 -6.62 6.43 23.06 0.15 -6.47 16 8 S 0.04 1.83 23.26 -56.49 -1.31 0.51 16 9 C -0.27 -11.06 11.11 66.65 0.74 -10.32 16 10 C -0.06 -2.64 8.26 21.54 0.18 -2.46 16 11 C -0.15 -7.78 5.51 -19.97 -0.11 -7.89 16 12 C 0.14 7.04 5.50 -19.63 -0.11 6.93 16 13 C -0.47 -22.87 7.62 23.22 0.18 -22.69 16 14 H 0.09 4.36 6.46 -2.91 -0.02 4.34 16 15 C 0.05 2.23 3.84 85.23 0.33 2.56 16 16 N -0.80 -38.84 10.83 21.82 0.24 -38.60 16 17 Si 0.96 35.01 29.61 68.60 2.03 37.04 16 18 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 19 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 21 H 0.04 1.48 7.08 -2.39 -0.02 1.46 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 25 H 0.06 2.28 7.25 -2.39 -0.02 2.26 16 26 H 0.13 4.76 8.05 -2.91 -0.02 4.73 16 27 H 0.38 11.64 9.06 -74.05 -0.67 10.97 16 28 H 0.18 5.99 8.06 -2.91 -0.02 5.97 16 29 H 0.12 5.75 6.08 -2.91 -0.02 5.73 16 30 H 0.29 12.96 8.30 -92.70 -0.77 12.19 16 Total: -1.00 -56.81 268.04 2.73 -54.08 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.50 Total: 27.54 kcal Atomic # 6 Polarization: -61.84 SS G_CDS: 2.49 Total: -59.35 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.24 Total: -38.60 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.21 Total: -21.21 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.31 Total: 0.51 kcal Total: -56.81 2.73 -54.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.860 kcal (2) G-P(sol) polarization free energy of solvation -56.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds