Wall clock time and date at job start Mon Mar 30 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47415 * 2 1 4 4 C 1.37424 * 119.48258 * 264.94030 * 3 2 1 5 5 C 1.38621 * 120.68512 * 180.02562 * 4 3 2 6 6 O 1.35650 * 120.14013 * 180.28880 * 5 4 3 7 7 C 1.41001 * 119.71550 * 0.02562 * 5 4 3 8 8 C 1.40757 * 120.14167 * 179.97438 * 7 5 4 9 9 H 1.07991 * 120.00382 * 310.54575 * 8 7 5 10 10 C 1.39860 * 119.99870 * 130.54545 * 8 7 5 11 11 N 1.30944 * 120.00135 * 157.13061 * 10 8 7 12 12 Si 1.86805 * 119.99868 * 337.13270 * 10 8 7 13 13 H 1.48507 * 109.47032 * 95.66020 * 12 10 8 14 14 H 1.48500 * 109.47109 * 215.66015 * 12 10 8 15 15 H 1.48498 * 109.47306 * 335.65959 * 12 10 8 16 16 C 1.42142 * 119.71382 * 359.97438 * 7 5 4 17 17 S 1.75912 * 130.45903 * 180.02562 * 16 7 5 18 18 C 1.75300 * 92.16710 * 180.02562 * 17 16 7 19 19 C 1.31895 * 111.30581 * 0.02562 * 18 17 16 20 20 C 1.39288 * 119.75121 * 0.02562 * 16 7 5 21 21 H 1.09001 * 109.47156 * 60.00022 * 1 2 3 22 22 H 1.09006 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47330 * 300.00303 * 1 2 3 24 24 H 1.08995 * 109.47026 * 239.99245 * 2 1 3 25 25 H 1.09010 * 109.46625 * 119.99807 * 2 1 3 26 26 H 1.08000 * 119.65673 * 0.03579 * 4 3 2 27 27 H 0.96694 * 114.00644 * 265.63427 * 6 5 4 28 28 H 0.97007 * 120.00115 * 179.97438 * 11 10 8 29 29 H 1.07999 * 124.34571 * 180.02562 * 18 17 16 30 30 H 1.08003 * 122.56025 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3573 2.0233 -1.1916 5 6 2.8223 3.3289 -1.2206 6 8 3.1343 3.9147 -2.4036 7 6 2.9643 4.0471 -0.0155 8 6 3.4361 5.3731 -0.0344 9 1 4.3319 5.6197 -0.5848 10 6 2.7448 6.3713 0.6597 11 7 3.3665 7.4633 1.0277 12 14 0.9344 6.1465 1.0617 13 1 0.7963 5.6077 2.4387 14 1 0.2408 7.4565 0.9708 15 1 0.3269 5.1967 0.0953 16 6 2.6289 3.4263 1.2184 17 16 2.6944 4.0466 2.8632 18 6 2.0987 2.5374 3.5270 19 6 1.8748 1.6510 2.5763 20 6 2.1632 2.1136 1.2276 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 2.2492 1.4739 -2.1152 27 1 4.0692 3.8480 -2.6412 28 1 2.8869 8.1558 1.5088 29 1 1.9360 2.3567 4.5792 30 1 1.5040 0.6580 2.7831 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:59 Heat of formation + Delta-G solvation = -16.848114 kcal Electronic energy + Delta-G solvation = -15836.620492 eV Core-core repulsion = 13301.692487 eV Total energy + Delta-G solvation = -2534.928005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86726 -36.45797 -34.11087 -33.87422 -32.20397 -29.55984 -27.58791 -25.35246 -22.68061 -22.43251 -20.54290 -19.54289 -17.88083 -16.89176 -15.85314 -15.37463 -15.03536 -14.05686 -13.90634 -13.58914 -13.28975 -13.23966 -12.80809 -12.48462 -11.96015 -11.84920 -11.42994 -11.39564 -11.12434 -10.86641 -10.57660 -10.46987 -10.12679 -9.81752 -9.69494 -9.36692 -9.00743 -8.14350 -7.37303 -6.93699 -6.63484 -4.46960 1.63480 2.30929 2.48187 2.94965 3.08204 3.23168 3.25944 3.36857 4.06241 4.37058 4.92830 5.30496 5.36311 5.49114 5.64599 5.84595 5.89418 5.98619 6.14199 6.21524 6.31051 6.40028 6.54525 6.61119 6.82019 6.95244 7.01426 7.27919 7.44573 7.60285 7.74992 8.21723 8.39845 8.70581 8.90865 10.10933 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.012238 C = 0.009266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.211880 B = 2287.327459 C = 3021.032699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.147 4.147 4 C -0.097 4.097 5 C 0.012 3.988 6 O -0.484 6.484 7 C 0.102 3.898 8 C -0.464 4.464 9 H 0.096 0.904 10 C 0.102 3.898 11 N -0.804 5.804 12 Si 0.841 3.159 13 H -0.223 1.223 14 H -0.276 1.276 15 H -0.249 1.249 16 C -0.181 4.181 17 S 0.080 5.920 18 C -0.221 4.221 19 C -0.126 4.126 20 C -0.050 4.050 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.107 0.893 27 H 0.362 0.638 28 H 0.284 0.716 29 H 0.152 0.848 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 -9.113 1.944 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.037 4.037 6 O -0.291 6.291 7 C 0.096 3.904 8 C -0.493 4.493 9 H 0.114 0.886 10 C -0.117 4.117 11 N -0.429 5.429 12 Si 0.664 3.336 13 H -0.146 1.146 14 H -0.202 1.202 15 H -0.173 1.173 16 C -0.297 4.297 17 S 0.344 5.656 18 C -0.355 4.355 19 C -0.159 4.159 20 C -0.058 4.058 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.125 0.875 27 H 0.214 0.786 28 H 0.094 0.906 29 H 0.169 0.831 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.115 -7.323 2.785 8.431 hybrid contribution -0.643 -1.247 -0.442 1.471 sum -3.758 -8.570 2.344 9.647 Atomic orbital electron populations 1.21775 0.96159 1.00232 1.02087 1.20219 0.95071 0.93646 1.01124 1.18866 1.09798 0.95735 0.90691 1.20619 1.00981 0.93698 0.96393 1.18489 1.08931 0.92090 0.84190 1.84763 1.29285 1.79348 1.35684 1.17389 0.90627 0.94565 0.87798 1.18926 1.11203 0.90660 1.28519 0.88642 1.25736 1.00076 0.94629 0.91308 1.69771 1.37843 1.07741 1.27544 0.87286 0.83549 0.79479 0.83329 1.14648 1.20161 1.17257 1.22761 1.13988 0.96677 0.96243 1.84293 1.70023 1.12511 0.98742 1.25095 1.08836 0.99140 1.02447 1.20830 1.04052 0.99815 0.91173 1.18889 1.01345 0.93016 0.92522 0.92894 0.93567 0.92856 0.92330 0.92267 0.87475 0.78556 0.90581 0.83070 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.89 37.16 0.37 -1.71 16 2 C -0.06 -0.98 5.82 -27.88 -0.16 -1.14 16 3 C -0.15 -2.93 5.21 -103.65 -0.54 -3.47 16 4 C -0.10 -2.01 9.51 -39.74 -0.38 -2.39 16 5 C 0.01 0.28 6.73 -38.39 -0.26 0.03 16 6 O -0.48 -10.58 12.94 -18.65 -0.24 -10.82 16 7 C 0.10 2.61 4.47 -106.40 -0.48 2.13 16 8 C -0.46 -12.61 8.81 -38.02 -0.33 -12.94 16 9 H 0.10 2.70 8.06 -52.49 -0.42 2.28 16 10 C 0.10 2.71 4.75 -17.32 -0.08 2.63 16 11 N -0.80 -21.67 13.93 55.54 0.77 -20.90 16 12 Si 0.84 20.38 25.08 -169.99 -4.26 16.12 16 13 H -0.22 -5.07 5.76 56.52 0.33 -4.74 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.25 -6.44 7.11 56.52 0.40 -6.04 16 16 C -0.18 -4.34 4.94 -37.69 -0.19 -4.53 16 17 S 0.08 1.75 18.81 -107.50 -2.02 -0.27 16 18 C -0.22 -4.02 11.03 28.83 0.32 -3.71 16 19 C -0.13 -2.33 9.80 -38.61 -0.38 -2.71 16 20 C -0.05 -1.08 5.97 -105.36 -0.63 -1.71 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 25 H 0.06 0.86 7.46 -51.92 -0.39 0.47 16 26 H 0.11 1.95 8.04 -52.49 -0.42 1.53 16 27 H 0.36 6.23 9.06 45.56 0.41 6.64 16 28 H 0.28 7.00 8.30 -40.82 -0.34 6.67 16 29 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.13 1.96 7.64 -52.48 -0.40 1.55 16 LS Contribution 266.74 15.07 4.02 4.02 Total: -1.00 -28.99 266.74 -7.01 -36.00 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -2.54 Total: 5.36 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -2.74 Total: -29.52 kcal Atomic # 7 Polarization: -21.67 SS G_CDS: 0.77 Total: -20.90 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.24 Total: -10.82 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.26 Total: 16.12 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.02 Total: -0.27 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.99 -7.01 -36.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.152 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds