Wall clock time and date at job start Mon Mar 30 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47415 * 2 1 4 4 C 1.37424 * 119.48258 * 264.94030 * 3 2 1 5 5 C 1.38621 * 120.68512 * 180.02562 * 4 3 2 6 6 O 1.35650 * 120.14013 * 180.28880 * 5 4 3 7 7 C 1.41001 * 119.71550 * 0.02562 * 5 4 3 8 8 C 1.40757 * 120.14167 * 179.97438 * 7 5 4 9 9 H 1.07991 * 120.00382 * 310.54575 * 8 7 5 10 10 C 1.39860 * 119.99870 * 130.54545 * 8 7 5 11 11 N 1.30944 * 120.00135 * 157.13061 * 10 8 7 12 12 Si 1.86805 * 119.99868 * 337.13270 * 10 8 7 13 13 H 1.48507 * 109.47032 * 95.66020 * 12 10 8 14 14 H 1.48500 * 109.47109 * 215.66015 * 12 10 8 15 15 H 1.48498 * 109.47306 * 335.65959 * 12 10 8 16 16 C 1.42142 * 119.71382 * 359.97438 * 7 5 4 17 17 S 1.75912 * 130.45903 * 180.02562 * 16 7 5 18 18 C 1.75300 * 92.16710 * 180.02562 * 17 16 7 19 19 C 1.31895 * 111.30581 * 0.02562 * 18 17 16 20 20 C 1.39288 * 119.75121 * 0.02562 * 16 7 5 21 21 H 1.09001 * 109.47156 * 60.00022 * 1 2 3 22 22 H 1.09006 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47330 * 300.00303 * 1 2 3 24 24 H 1.08995 * 109.47026 * 239.99245 * 2 1 3 25 25 H 1.09010 * 109.46625 * 119.99807 * 2 1 3 26 26 H 1.08000 * 119.65673 * 0.03579 * 4 3 2 27 27 H 0.96694 * 114.00644 * 265.63427 * 6 5 4 28 28 H 0.97007 * 120.00115 * 179.97438 * 11 10 8 29 29 H 1.07999 * 124.34571 * 180.02562 * 18 17 16 30 30 H 1.08003 * 122.56025 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3573 2.0233 -1.1916 5 6 2.8223 3.3289 -1.2206 6 8 3.1343 3.9147 -2.4036 7 6 2.9643 4.0471 -0.0155 8 6 3.4361 5.3731 -0.0344 9 1 4.3319 5.6197 -0.5848 10 6 2.7448 6.3713 0.6597 11 7 3.3665 7.4633 1.0277 12 14 0.9344 6.1465 1.0617 13 1 0.7963 5.6077 2.4387 14 1 0.2408 7.4565 0.9708 15 1 0.3269 5.1967 0.0953 16 6 2.6289 3.4263 1.2184 17 16 2.6944 4.0466 2.8632 18 6 2.0987 2.5374 3.5270 19 6 1.8748 1.6510 2.5763 20 6 2.1632 2.1136 1.2276 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 2.2492 1.4739 -2.1152 27 1 4.0692 3.8480 -2.6412 28 1 2.8869 8.1558 1.5088 29 1 1.9360 2.3567 4.5792 30 1 1.5040 0.6580 2.7831 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:59 Heat of formation + Delta-G solvation = -35.872042 kcal Electronic energy + Delta-G solvation = -15837.445432 eV Core-core repulsion = 13301.692487 eV Total energy + Delta-G solvation = -2535.752945 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55968 -38.13924 -35.87902 -35.39475 -33.88075 -31.16901 -29.23824 -27.02130 -24.31078 -23.96171 -22.07377 -21.16668 -19.75516 -18.58505 -17.55859 -17.03063 -16.80033 -15.81271 -15.53769 -15.07376 -14.87068 -14.62313 -14.49859 -14.08077 -13.64416 -13.36781 -13.08811 -12.95332 -12.81238 -12.49034 -12.12499 -11.98688 -11.80265 -11.38030 -11.31997 -11.18435 -10.77729 -9.87091 -9.06802 -8.87594 -8.37098 -6.44899 0.01684 0.56070 0.83280 1.19586 1.28544 1.36037 1.47044 1.57404 2.12364 2.58131 3.08328 3.70706 3.90477 4.18746 4.35235 4.46430 4.52847 4.65384 4.79080 4.84040 5.02806 5.04923 5.16089 5.19293 5.26548 5.40218 5.49175 5.57952 5.73669 5.90281 6.07881 6.21827 6.53308 6.77036 7.21502 8.23013 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.012238 C = 0.009266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.211880 B = 2287.327459 C = 3021.032699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.120 4.120 4 C -0.111 4.111 5 C 0.008 3.992 6 O -0.497 6.497 7 C 0.069 3.931 8 C -0.499 4.499 9 H 0.060 0.940 10 C 0.076 3.924 11 N -0.849 5.849 12 Si 0.878 3.122 13 H -0.200 1.200 14 H -0.266 1.266 15 H -0.277 1.277 16 C -0.198 4.198 17 S 0.026 5.974 18 C -0.201 4.201 19 C -0.122 4.122 20 C -0.071 4.071 21 H 0.042 0.958 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.382 0.618 28 H 0.288 0.712 29 H 0.195 0.805 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 -13.036 2.975 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.123 4.123 4 C -0.131 4.131 5 C -0.041 4.041 6 O -0.306 6.306 7 C 0.064 3.936 8 C -0.530 4.530 9 H 0.078 0.922 10 C -0.139 4.139 11 N -0.476 5.476 12 Si 0.700 3.300 13 H -0.123 1.123 14 H -0.191 1.191 15 H -0.202 1.202 16 C -0.313 4.313 17 S 0.289 5.711 18 C -0.334 4.334 19 C -0.152 4.152 20 C -0.079 4.079 21 H 0.061 0.939 22 H 0.097 0.903 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.155 0.845 27 H 0.237 0.763 28 H 0.099 0.901 29 H 0.213 0.787 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.896 -11.270 3.818 12.867 hybrid contribution -0.085 -0.375 -0.863 0.945 sum -4.981 -11.645 2.955 13.006 Atomic orbital electron populations 1.21746 0.94796 1.02192 1.01283 1.20376 0.96031 0.90439 1.03284 1.19583 1.05382 0.97680 0.89675 1.20953 1.00899 0.92908 0.98322 1.18872 1.08153 0.93056 0.84035 1.84668 1.31081 1.79704 1.35181 1.17580 0.92423 0.94214 0.89425 1.18791 1.11448 0.92296 1.30428 0.92189 1.26124 1.02089 0.94313 0.91329 1.69796 1.38827 1.08854 1.30160 0.86760 0.80633 0.79084 0.83497 1.12308 1.19149 1.20157 1.23001 1.14028 0.97966 0.96302 1.84461 1.71466 1.16257 0.98902 1.25475 1.07114 0.96325 1.04501 1.21143 1.03257 1.01593 0.89224 1.19474 1.01330 0.92243 0.94831 0.93901 0.90286 0.93579 0.90237 0.90189 0.84502 0.76283 0.90123 0.78748 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.89 71.98 0.71 -2.61 16 2 C -0.06 -1.63 5.82 29.85 0.17 -1.45 16 3 C -0.12 -4.34 5.21 -19.23 -0.10 -4.44 16 4 C -0.11 -4.36 9.51 22.17 0.21 -4.15 16 5 C 0.01 0.36 6.73 23.04 0.16 0.51 16 6 O -0.50 -22.12 12.94 -89.65 -1.16 -23.28 16 7 C 0.07 3.62 4.47 -21.02 -0.09 3.53 16 8 C -0.50 -28.83 8.81 23.28 0.21 -28.63 16 9 H 0.06 3.72 8.06 -2.92 -0.02 3.70 16 10 C 0.08 4.26 4.75 85.22 0.40 4.66 16 11 N -0.85 -48.42 13.93 21.82 0.30 -48.12 16 12 Si 0.88 43.15 25.08 68.60 1.72 44.87 16 13 H -0.20 -8.99 5.76 99.48 0.57 -8.41 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.28 -14.59 7.11 99.48 0.71 -13.89 16 16 C -0.20 -9.41 4.94 23.49 0.12 -9.29 16 17 S 0.03 1.13 18.81 -56.49 -1.06 0.07 16 18 C -0.20 -6.49 11.03 66.98 0.74 -5.75 16 19 C -0.12 -3.90 9.80 23.30 0.23 -3.67 16 20 C -0.07 -2.84 5.97 -20.34 -0.12 -2.96 16 21 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.76 8.02 -2.39 -0.02 1.74 16 25 H 0.08 1.78 7.46 -2.38 -0.02 1.76 16 26 H 0.14 4.51 8.04 -2.91 -0.02 4.49 16 27 H 0.38 13.53 9.06 -74.06 -0.67 12.86 16 28 H 0.29 15.02 8.30 -92.70 -0.77 14.25 16 29 H 0.20 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.17 4.03 7.64 -2.91 -0.02 4.01 16 Total: -1.00 -66.63 266.74 2.79 -63.84 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.36 Total: 16.89 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 2.63 Total: -54.26 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.30 Total: -48.12 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -1.16 Total: -23.28 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.72 Total: 44.87 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.06 Total: 0.07 kcal Total: -66.63 2.79 -63.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.967 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds