Wall clock time and date at job start Mon Mar 30 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46989 * 2 1 4 4 C 1.31916 * 124.36243 * 89.72425 * 3 2 1 5 5 C 1.45389 * 114.87827 * 179.84750 * 4 3 2 6 6 C 1.39172 * 111.90549 * 0.42644 * 5 4 3 7 7 S 1.75316 * 124.36154 * 270.02779 * 3 2 1 8 8 C 1.42274 * 119.73673 * 179.77892 * 6 5 4 9 9 C 1.40799 * 120.04451 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99769 * 25.12243 * 9 8 6 11 11 C 1.39806 * 120.00388 * 205.12293 * 9 8 6 12 12 N 1.30963 * 119.99930 * 17.99122 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 197.99215 * 11 9 8 14 14 H 1.48500 * 109.47036 * 60.00414 * 13 11 9 15 15 H 1.48506 * 109.46757 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47149 * 300.00225 * 13 11 9 17 17 C 1.40515 * 119.91992 * 0.02562 * 8 6 5 18 18 C 1.37623 * 119.95548 * 0.02562 * 17 8 6 19 19 C 1.38570 * 120.66868 * 359.97438 * 18 17 8 20 20 O 1.35587 * 119.61594 * 180.02562 * 19 18 17 21 21 H 1.08995 * 109.47279 * 299.99804 * 1 2 3 22 22 H 1.09000 * 109.47284 * 60.00032 * 1 2 3 23 23 H 1.09005 * 109.46889 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47791 * 120.00051 * 2 1 3 25 25 H 1.09004 * 109.47015 * 240.00280 * 2 1 3 26 26 H 1.07997 * 122.56492 * 359.97438 * 4 3 2 27 27 H 0.97001 * 120.00475 * 179.97438 * 12 11 9 28 28 H 1.07998 * 120.02298 * 180.02562 * 17 8 6 29 29 H 1.07999 * 119.66591 * 180.02562 * 18 17 8 30 30 H 0.96699 * 113.99878 * 269.98308 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2755 2.1246 1.0889 5 6 2.7579 3.4750 0.8494 6 6 2.8573 3.7574 -0.5097 7 16 2.3614 2.3540 -1.4472 8 6 3.3095 5.0382 -0.9332 9 6 3.4131 5.3307 -2.3066 10 1 2.8034 4.7960 -3.0200 11 6 4.3051 6.3131 -2.7468 12 7 5.2795 6.7098 -1.9668 13 14 4.1071 7.0599 -4.4476 14 1 2.7766 7.7114 -4.5502 15 1 5.1715 8.0711 -4.6711 16 1 4.2154 5.9913 -5.4730 17 6 3.6537 6.0107 0.0209 18 6 3.5534 5.7225 1.3629 19 6 3.1143 4.4788 1.7878 20 8 3.0230 4.2180 3.1153 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.1296 1.7273 2.0825 27 1 5.8986 7.3911 -2.2724 28 1 3.9968 6.9836 -0.2986 29 1 3.8187 6.4735 2.0922 30 1 3.8294 3.8479 3.4997 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314137.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:10 Heat of formation + Delta-G solvation = -42.943364 kcal Electronic energy + Delta-G solvation = -15250.395880 eV Core-core repulsion = 12714.336300 eV Total energy + Delta-G solvation = -2536.059580 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25627 -37.63664 -37.21430 -35.10314 -33.29184 -31.22830 -28.98971 -26.89824 -24.90158 -23.59316 -22.38802 -20.88825 -19.31929 -19.02889 -17.40144 -16.70794 -16.42853 -16.19400 -15.58899 -15.05893 -14.93772 -14.41964 -14.29982 -13.86263 -13.51199 -13.33945 -12.92437 -12.84479 -12.57665 -12.35990 -12.18573 -12.08470 -11.75490 -11.48771 -11.43336 -11.10952 -10.85189 -9.94006 -9.07876 -8.80137 -8.46273 -6.37408 0.16288 0.71111 0.96064 1.34473 1.39585 1.45711 1.48239 1.71227 2.15113 2.57939 3.43228 3.73924 3.84856 4.24238 4.36273 4.45195 4.47927 4.64713 4.83304 4.95808 4.98422 5.05469 5.16786 5.26038 5.36025 5.38841 5.47323 5.62415 5.81532 5.95275 6.08631 6.42841 6.72069 6.72990 7.21055 8.19195 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.008298 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.724542 B = 3373.563127 C = 4459.542327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C -0.157 4.157 4 C -0.136 4.136 5 C -0.078 4.078 6 C -0.235 4.235 7 S 0.044 5.956 8 C 0.113 3.887 9 C -0.480 4.480 10 H 0.077 0.923 11 C 0.039 3.961 12 N -0.808 5.808 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.261 1.261 16 H -0.259 1.259 17 C -0.187 4.187 18 C -0.109 4.109 19 C -0.017 4.017 20 O -0.499 6.499 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.295 0.705 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -7.595 1.420 8.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.272 4.272 4 C -0.167 4.167 5 C -0.086 4.086 6 C -0.350 4.350 7 S 0.307 5.693 8 C 0.108 3.892 9 C -0.508 4.508 10 H 0.095 0.905 11 C -0.178 4.178 12 N -0.433 5.433 13 Si 0.802 3.198 14 H -0.184 1.184 15 H -0.185 1.185 16 H -0.183 1.183 17 C -0.210 4.210 18 C -0.128 4.128 19 C -0.064 4.064 20 O -0.308 6.308 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.100 0.900 26 H 0.168 0.832 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.786 -7.591 -0.169 8.484 hybrid contribution 0.879 0.934 0.983 1.615 sum -2.907 -6.657 0.814 7.310 Atomic orbital electron populations 1.21758 0.93509 1.02996 1.01794 1.20252 0.96827 0.87572 1.04200 1.24342 1.06033 1.01597 0.95267 1.20840 1.04117 0.92057 0.99683 1.19601 1.02092 0.94570 0.92292 1.22813 1.17573 0.99038 0.95550 1.83365 1.71416 1.05013 1.09556 1.17361 0.89248 0.88116 0.94499 1.19650 1.20077 1.18461 0.92662 0.90533 1.26761 0.92355 0.94721 1.03954 1.69897 1.10187 1.23739 1.39448 0.85245 0.79542 0.78707 0.76337 1.18350 1.18509 1.18289 1.20953 1.09126 0.99532 0.91380 1.20991 0.99541 0.96235 0.96069 1.17884 1.13304 0.93325 0.81934 1.84705 1.41133 1.85544 1.19388 0.92952 0.93509 0.89543 0.88403 0.89990 0.83247 0.89452 0.86590 0.86255 0.76644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.89 71.98 0.71 -2.44 16 2 C -0.05 -1.23 6.37 29.85 0.19 -1.04 16 3 C -0.16 -5.60 5.64 24.83 0.14 -5.46 16 4 C -0.14 -5.34 10.09 23.26 0.23 -5.11 16 5 C -0.08 -3.70 6.04 -20.29 -0.12 -3.82 16 6 C -0.23 -12.00 6.36 23.50 0.15 -11.85 16 7 S 0.04 1.86 22.78 -56.49 -1.29 0.57 16 8 C 0.11 6.22 5.59 -21.09 -0.12 6.10 16 9 C -0.48 -25.74 8.81 23.28 0.20 -25.53 16 10 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 11 C 0.04 1.94 5.11 85.20 0.44 2.38 16 12 N -0.81 -40.94 10.98 21.81 0.24 -40.71 16 13 Si 0.98 37.21 29.60 68.60 2.03 39.24 16 14 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 15 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 16 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 17 C -0.19 -9.94 8.65 22.68 0.20 -9.74 16 18 C -0.11 -5.24 9.90 22.20 0.22 -5.02 16 19 C -0.02 -0.78 6.78 23.27 0.16 -0.63 16 20 O -0.50 -19.63 13.37 -88.96 -1.19 -20.82 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.15 5.03 8.06 -2.91 -0.02 5.00 16 27 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 28 H 0.12 6.28 6.17 -2.91 -0.02 6.26 16 29 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 30 H 0.38 11.22 9.06 -74.06 -0.67 10.55 16 Total: -1.00 -61.85 275.39 2.69 -59.16 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.50 Total: 24.70 kcal Atomic # 6 Polarization: -64.56 SS G_CDS: 2.40 Total: -62.16 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.24 Total: -40.71 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.19 Total: -20.82 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.29 Total: 0.57 kcal Total: -61.85 2.69 -59.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314137.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.221 kcal (2) G-P(sol) polarization free energy of solvation -61.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds