Wall clock time and date at job start Mon Mar 30 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46975 * 2 1 4 4 C 1.37905 * 120.06264 * 265.29573 * 3 2 1 5 5 C 1.37785 * 120.76325 * 180.27780 * 4 3 2 6 6 C 1.41315 * 120.90945 * 359.69987 * 5 4 3 7 7 C 1.45686 * 129.15877 * 180.02562 * 6 5 4 8 8 O 1.36160 * 122.61402 * 0.02562 * 7 6 5 9 9 C 1.32176 * 114.77604 * 179.97438 * 7 6 5 10 10 S 1.75284 * 111.33635 * 0.02562 * 9 7 6 11 11 C 1.39428 * 119.01126 * 0.02562 * 6 5 4 12 12 C 1.40404 * 120.06077 * 85.00296 * 3 2 1 13 13 C 1.40915 * 120.11309 * 0.02562 * 12 3 2 14 14 H 1.08001 * 120.00070 * 43.42692 * 13 12 3 15 15 C 1.39876 * 120.00110 * 223.41951 * 13 12 3 16 16 N 1.30902 * 120.00221 * 207.38163 * 15 13 12 17 17 Si 1.86799 * 119.99968 * 27.38740 * 15 13 12 18 18 H 1.48500 * 109.47152 * 264.74725 * 17 15 13 19 19 H 1.48506 * 109.46906 * 24.74310 * 17 15 13 20 20 H 1.48501 * 109.47357 * 144.74215 * 17 15 13 21 21 H 1.09003 * 109.47103 * 59.99728 * 1 2 3 22 22 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47398 * 300.00155 * 1 2 3 24 24 H 1.08997 * 109.47616 * 240.00178 * 2 1 3 25 25 H 1.09003 * 109.47205 * 119.99726 * 2 1 3 26 26 H 1.08004 * 119.61514 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.54429 * 179.68378 * 5 4 3 28 28 H 0.96701 * 113.99838 * 89.99573 * 8 7 6 29 29 H 1.08007 * 124.33298 * 179.97438 * 9 7 6 30 30 H 0.96992 * 120.00010 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3548 2.0395 -1.1895 5 6 2.8207 3.3361 -1.2058 6 6 2.9743 4.0675 -0.0065 7 6 3.4455 5.4327 0.1847 8 8 3.8238 6.2304 -0.8519 9 6 3.4762 5.8371 1.4427 10 16 2.9275 4.5774 2.5311 11 6 2.6470 3.4577 1.2040 12 6 2.1669 2.1192 1.2106 13 6 1.8334 1.4937 2.4285 14 1 2.1411 0.4753 2.6145 15 6 1.1041 2.1919 3.3965 16 7 1.2354 1.8853 4.6623 17 14 -0.0575 3.5617 2.8830 18 1 0.6414 4.8679 2.9856 19 1 -0.4925 3.3419 1.4802 20 1 -1.2449 3.5642 3.7748 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2456 1.4998 -2.1186 27 1 3.0723 3.7998 -2.1483 28 1 3.1042 6.7572 -1.2257 29 1 3.7988 6.8179 1.7596 30 1 0.7293 2.3691 5.3336 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:40 Heat of formation + Delta-G solvation = -16.093284 kcal Electronic energy + Delta-G solvation = -15846.802400 eV Core-core repulsion = 13311.907126 eV Total energy + Delta-G solvation = -2534.895273 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.84904 -37.22332 -34.03663 -33.46938 -31.43806 -30.34881 -27.56766 -25.30038 -23.22640 -21.67893 -20.86905 -19.39174 -18.02963 -16.54516 -16.38937 -15.22685 -14.75701 -14.52753 -14.21569 -13.72444 -13.07823 -12.81987 -12.53302 -12.28486 -12.18290 -12.02749 -11.46636 -11.12684 -11.07263 -10.76757 -10.38977 -10.27947 -10.07745 -9.76552 -9.73276 -9.40404 -9.15717 -8.10541 -7.44763 -7.02059 -6.59128 -4.50097 1.62173 2.37488 2.43572 2.87721 3.07265 3.17543 3.20255 3.29311 3.98943 4.37175 4.85544 5.05333 5.37651 5.79203 5.86845 6.02503 6.20771 6.28359 6.35932 6.40493 6.51402 6.60190 6.74503 6.86114 7.01535 7.05031 7.16301 7.29890 7.53043 7.71392 7.94751 8.05356 8.25344 8.51046 8.69016 10.00444 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.013836 C = 0.009171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.158816 B = 2023.162528 C = 3052.312914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.167 4.167 4 C -0.076 4.076 5 C -0.191 4.191 6 C -0.066 4.066 7 C 0.088 3.912 8 O -0.487 6.487 9 C -0.257 4.257 10 S 0.104 5.896 11 C -0.197 4.197 12 C 0.132 3.868 13 C -0.466 4.466 14 H 0.100 0.900 15 C 0.103 3.897 16 N -0.793 5.793 17 Si 0.822 3.178 18 H -0.209 1.209 19 H -0.248 1.248 20 H -0.275 1.275 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.377 0.623 29 H 0.155 0.845 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 3.956 -5.290 6.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.172 4.172 4 C -0.095 4.095 5 C -0.213 4.213 6 C -0.074 4.074 7 C 0.030 3.970 8 O -0.295 6.295 9 C -0.391 4.391 10 S 0.367 5.633 11 C -0.312 4.312 12 C 0.127 3.873 13 C -0.494 4.494 14 H 0.117 0.883 15 C -0.118 4.118 16 N -0.416 5.416 17 Si 0.644 3.356 18 H -0.133 1.133 19 H -0.171 1.171 20 H -0.200 1.200 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.231 0.769 29 H 0.173 0.827 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.799 3.705 -3.283 5.014 hybrid contribution -0.812 0.994 -1.675 2.110 sum -1.612 4.699 -4.958 7.018 Atomic orbital electron populations 1.21657 0.96362 0.99858 1.01837 1.20097 0.95056 0.93380 1.00675 1.19741 1.08327 0.97333 0.91773 1.20393 0.98309 0.94219 0.96626 1.20174 1.11110 0.95257 0.94730 1.19067 1.01549 0.92515 0.94238 1.18227 1.02519 0.89785 0.86508 1.84872 1.37484 1.58227 1.48957 1.25257 1.10923 1.05242 0.97723 1.84295 1.66368 1.03810 1.08794 1.22652 1.13628 1.00906 0.93994 1.16880 0.89789 0.87417 0.93254 1.19142 1.31908 1.01986 0.96400 0.88250 1.25797 0.96275 0.96079 0.93662 1.69802 1.32937 1.37690 1.01202 0.87617 0.81730 0.84847 0.81385 1.13300 1.17094 1.20037 0.93878 0.94023 0.91978 0.93492 0.91353 0.88086 0.88165 0.76934 0.82686 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 37.16 0.37 -2.15 16 2 C -0.05 -1.05 5.58 -27.88 -0.16 -1.21 16 3 C -0.17 -3.70 5.19 -103.93 -0.54 -4.24 16 4 C -0.08 -1.57 9.61 -39.87 -0.38 -1.95 16 5 C -0.19 -4.04 10.08 -38.58 -0.39 -4.42 16 6 C -0.07 -1.50 6.04 -105.31 -0.64 -2.14 16 7 C 0.09 1.79 6.91 -38.54 -0.27 1.52 16 8 O -0.49 -8.40 13.61 -20.25 -0.28 -8.68 16 9 C -0.26 -5.00 10.99 28.81 0.32 -4.69 16 10 S 0.10 2.29 18.03 -107.50 -1.94 0.35 16 11 C -0.20 -4.73 4.97 -37.62 -0.19 -4.92 16 12 C 0.13 3.26 4.62 -106.55 -0.49 2.76 16 13 C -0.47 -11.97 8.22 -37.96 -0.31 -12.28 16 14 H 0.10 2.67 7.04 -52.49 -0.37 2.30 16 15 C 0.10 2.59 4.58 -17.34 -0.08 2.51 16 16 N -0.79 -20.36 13.93 55.54 0.77 -19.59 16 17 Si 0.82 18.77 25.03 -169.99 -4.25 14.52 16 18 H -0.21 -4.53 5.36 58.53 0.31 -4.22 16 19 H -0.25 -5.93 7.11 56.52 0.40 -5.52 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 1.25 7.94 -51.93 -0.41 0.84 16 24 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 25 H 0.07 1.37 6.70 -51.93 -0.35 1.03 16 26 H 0.10 1.78 8.06 -52.48 -0.42 1.35 16 27 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 28 H 0.38 4.58 9.07 45.56 0.41 4.99 16 29 H 0.16 2.52 8.06 -52.48 -0.42 2.10 16 30 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -27.75 264.43 -6.94 -34.69 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.47 Total: 5.93 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: -2.76 Total: -31.20 kcal Atomic # 7 Polarization: -20.36 SS G_CDS: 0.77 Total: -19.59 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.28 Total: -8.68 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.25 Total: 14.52 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.94 Total: 0.35 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.75 -6.94 -34.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.593 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds