Wall clock time and date at job start Mon Mar 30 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46975 * 2 1 4 4 C 1.37905 * 120.06264 * 265.29573 * 3 2 1 5 5 C 1.37785 * 120.76325 * 180.27780 * 4 3 2 6 6 C 1.41315 * 120.90945 * 359.69987 * 5 4 3 7 7 C 1.45686 * 129.15877 * 180.02562 * 6 5 4 8 8 O 1.36160 * 122.61402 * 0.02562 * 7 6 5 9 9 C 1.32176 * 114.77604 * 179.97438 * 7 6 5 10 10 S 1.75284 * 111.33635 * 0.02562 * 9 7 6 11 11 C 1.39428 * 119.01126 * 0.02562 * 6 5 4 12 12 C 1.40404 * 120.06077 * 85.00296 * 3 2 1 13 13 C 1.40915 * 120.11309 * 0.02562 * 12 3 2 14 14 H 1.08001 * 120.00070 * 43.42692 * 13 12 3 15 15 C 1.39876 * 120.00110 * 223.41951 * 13 12 3 16 16 N 1.30902 * 120.00221 * 207.38163 * 15 13 12 17 17 Si 1.86799 * 119.99968 * 27.38740 * 15 13 12 18 18 H 1.48500 * 109.47152 * 264.74725 * 17 15 13 19 19 H 1.48506 * 109.46906 * 24.74310 * 17 15 13 20 20 H 1.48501 * 109.47357 * 144.74215 * 17 15 13 21 21 H 1.09003 * 109.47103 * 59.99728 * 1 2 3 22 22 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47398 * 300.00155 * 1 2 3 24 24 H 1.08997 * 109.47616 * 240.00178 * 2 1 3 25 25 H 1.09003 * 109.47205 * 119.99726 * 2 1 3 26 26 H 1.08004 * 119.61514 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.54429 * 179.68378 * 5 4 3 28 28 H 0.96701 * 113.99838 * 89.99573 * 8 7 6 29 29 H 1.08007 * 124.33298 * 179.97438 * 9 7 6 30 30 H 0.96992 * 120.00010 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3548 2.0395 -1.1895 5 6 2.8207 3.3361 -1.2058 6 6 2.9743 4.0675 -0.0065 7 6 3.4455 5.4327 0.1847 8 8 3.8238 6.2304 -0.8519 9 6 3.4762 5.8371 1.4427 10 16 2.9275 4.5774 2.5311 11 6 2.6470 3.4577 1.2040 12 6 2.1669 2.1192 1.2106 13 6 1.8334 1.4937 2.4285 14 1 2.1411 0.4753 2.6145 15 6 1.1041 2.1919 3.3965 16 7 1.2354 1.8853 4.6623 17 14 -0.0575 3.5617 2.8830 18 1 0.6414 4.8679 2.9856 19 1 -0.4925 3.3419 1.4802 20 1 -1.2449 3.5642 3.7748 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2456 1.4998 -2.1186 27 1 3.0723 3.7998 -2.1483 28 1 3.1042 6.7572 -1.2257 29 1 3.7988 6.8179 1.7596 30 1 0.7293 2.3691 5.3336 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:39 Heat of formation + Delta-G solvation = -33.591438 kcal Electronic energy + Delta-G solvation = -15847.561177 eV Core-core repulsion = 13311.907126 eV Total energy + Delta-G solvation = -2535.654050 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47280 -38.75903 -35.68677 -35.19194 -32.98745 -32.11029 -29.16564 -27.09795 -24.81033 -23.38190 -22.43201 -21.00157 -19.78987 -18.15193 -18.01856 -16.94826 -16.42722 -16.16401 -15.77610 -15.28373 -14.86006 -14.44939 -14.16580 -13.96173 -13.80219 -13.58186 -13.06043 -12.88605 -12.81214 -12.41701 -12.05600 -11.88601 -11.60598 -11.43819 -11.36574 -11.08201 -10.92486 -9.85255 -9.13076 -8.88867 -8.31053 -6.39617 -0.00242 0.65463 0.76643 1.18394 1.35653 1.37897 1.43093 1.50505 2.15363 2.58699 3.26035 3.38855 3.91945 4.24668 4.32072 4.50569 4.61929 4.76550 4.80334 4.89828 4.93799 5.10666 5.16308 5.20281 5.35052 5.50316 5.54762 5.63827 5.80939 5.96836 6.22458 6.34533 6.70644 6.80983 6.82633 8.19373 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.013836 C = 0.009171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.158816 B = 2023.162528 C = 3052.312914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C -0.171 4.171 4 C -0.081 4.081 5 C -0.178 4.178 6 C -0.091 4.091 7 C 0.093 3.907 8 O -0.484 6.484 9 C -0.244 4.244 10 S 0.067 5.933 11 C -0.217 4.217 12 C 0.106 3.894 13 C -0.490 4.490 14 H 0.069 0.931 15 C 0.081 3.919 16 N -0.833 5.833 17 Si 0.856 3.144 18 H -0.191 1.191 19 H -0.267 1.267 20 H -0.267 1.267 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.403 0.597 29 H 0.190 0.810 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 5.411 -7.972 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.175 4.175 4 C -0.101 4.101 5 C -0.199 4.199 6 C -0.098 4.098 7 C 0.034 3.966 8 O -0.296 6.296 9 C -0.378 4.378 10 S 0.330 5.670 11 C -0.332 4.332 12 C 0.101 3.899 13 C -0.519 4.519 14 H 0.087 0.913 15 C -0.136 4.136 16 N -0.459 5.459 17 Si 0.678 3.322 18 H -0.114 1.114 19 H -0.191 1.191 20 H -0.192 1.192 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.157 0.843 27 H 0.147 0.853 28 H 0.261 0.739 29 H 0.207 0.793 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.653 5.182 -5.991 7.948 hybrid contribution -0.749 0.561 -1.118 1.457 sum -1.401 5.743 -7.108 9.245 Atomic orbital electron populations 1.21601 0.95344 1.01370 1.00856 1.20156 0.95913 0.91973 1.01241 1.20234 1.07057 0.98457 0.91798 1.20810 0.97424 0.94388 0.97440 1.20672 1.08555 0.95264 0.95439 1.19549 1.02041 0.94040 0.94218 1.18093 1.01764 0.89236 0.87463 1.84817 1.38789 1.57975 1.47999 1.25466 1.10185 1.05507 0.96670 1.84356 1.67765 1.05022 1.09896 1.22870 1.13999 1.01081 0.95267 1.17118 0.90657 0.88453 0.93712 1.18990 1.34037 1.00939 0.97974 0.91348 1.26170 0.96654 0.97311 0.93462 1.69824 1.34663 1.39566 1.01856 0.87121 0.80888 0.84324 0.79879 1.11402 1.19090 1.19198 0.92587 0.91341 0.95099 0.90328 0.93279 0.84273 0.85269 0.73904 0.79282 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.89 71.98 0.71 -3.98 16 2 C -0.06 -2.09 5.58 29.85 0.17 -1.92 16 3 C -0.17 -7.42 5.19 -19.42 -0.10 -7.52 16 4 C -0.08 -3.10 9.61 22.08 0.21 -2.88 16 5 C -0.18 -6.89 10.08 22.92 0.23 -6.66 16 6 C -0.09 -3.90 6.04 -20.31 -0.12 -4.02 16 7 C 0.09 3.44 6.91 23.19 0.16 3.60 16 8 O -0.48 -14.52 13.61 -95.37 -1.30 -15.81 16 9 C -0.24 -8.83 10.99 66.81 0.73 -8.09 16 10 S 0.07 2.94 18.03 -56.49 -1.02 1.92 16 11 C -0.22 -10.36 4.97 23.54 0.12 -10.25 16 12 C 0.11 5.29 4.62 -21.11 -0.10 5.19 16 13 C -0.49 -26.38 8.22 23.32 0.19 -26.19 16 14 H 0.07 3.97 7.04 -2.91 -0.02 3.95 16 15 C 0.08 4.25 4.58 85.23 0.39 4.64 16 16 N -0.83 -44.78 13.93 21.82 0.30 -44.47 16 17 Si 0.86 39.31 25.03 68.60 1.72 41.02 16 18 H -0.19 -8.12 5.36 98.20 0.53 -7.60 16 19 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.03 1.25 7.94 -2.39 -0.02 1.23 16 24 H 0.08 2.43 8.05 -2.39 -0.02 2.41 16 25 H 0.05 2.02 6.70 -2.39 -0.02 2.01 16 26 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 27 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.40 7.79 9.07 -74.06 -0.67 7.12 16 29 H 0.19 5.40 8.06 -2.91 -0.02 5.38 16 30 H 0.29 14.23 8.30 -92.71 -0.77 13.47 16 Total: -1.00 -61.08 264.43 2.61 -58.46 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.32 Total: 16.96 kcal Atomic # 6 Polarization: -60.67 SS G_CDS: 2.59 Total: -58.08 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.30 Total: -44.47 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.30 Total: -15.81 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.72 Total: 41.02 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.02 Total: 1.92 kcal Total: -61.08 2.61 -58.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.871 kcal (2) G-P(sol) polarization free energy of solvation -61.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds