Wall clock time and date at job start Mon Mar 30 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47524 * 2 1 4 4 C 1.41843 * 119.58693 * 90.00301 * 3 2 1 5 5 C 1.40531 * 128.58637 * 359.95456 * 4 3 2 6 6 C 1.32440 * 115.88410 * 180.02562 * 5 4 3 7 7 S 1.75462 * 110.87265 * 0.02562 * 6 5 4 8 8 C 1.40407 * 119.08229 * 180.02562 * 4 3 2 9 9 C 1.38803 * 120.26165 * 359.97438 * 8 4 3 10 10 C 1.40334 * 120.05564 * 0.02590 * 9 8 4 11 11 C 1.40860 * 120.23944 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99955 * 154.80389 * 11 10 9 13 13 C 1.39895 * 120.00104 * 334.80609 * 11 10 9 14 14 N 1.30910 * 119.99995 * 342.25702 * 13 11 10 15 15 Si 1.86798 * 120.00342 * 162.25851 * 13 11 10 16 16 H 1.48507 * 109.47030 * 94.64443 * 15 13 11 17 17 H 1.48494 * 109.47273 * 214.64316 * 15 13 11 18 18 H 1.48504 * 109.46994 * 334.64508 * 15 13 11 19 19 C 1.35755 * 119.58484 * 270.02740 * 3 2 1 20 20 O 1.35821 * 119.87628 * 359.97279 * 19 3 2 21 21 H 1.08994 * 109.47428 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46303 * 299.99889 * 1 2 3 23 23 H 1.08993 * 109.46890 * 59.99551 * 1 2 3 24 24 H 1.09008 * 109.46801 * 240.00086 * 2 1 3 25 25 H 1.08997 * 109.47377 * 120.00452 * 2 1 3 26 26 H 1.08001 * 122.05431 * 0.04695 * 5 4 3 27 27 H 1.08001 * 124.56169 * 180.26783 * 6 5 4 28 28 H 1.08004 * 119.97263 * 179.97438 * 9 8 4 29 29 H 0.96996 * 120.00129 * 179.97438 * 14 13 11 30 30 H 0.96695 * 114.00080 * 90.00581 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2660 2.0810 1.2335 5 6 2.0911 1.5887 2.5380 6 6 2.3879 2.4290 3.5178 7 16 2.9326 3.9689 2.8771 8 6 2.7336 3.4049 1.2211 9 6 2.9632 4.0544 0.0161 10 6 2.7279 3.3892 -1.1969 11 6 2.9591 4.0448 -2.4220 12 1 3.1780 3.4695 -3.3095 13 6 2.9053 5.4411 -2.4892 14 7 2.3141 6.1199 -1.5386 15 14 3.6770 6.3371 -3.9352 16 1 2.6414 6.5939 -4.9682 17 1 4.2445 7.6286 -3.4716 18 1 4.7585 5.5011 -4.5155 19 6 2.2554 2.0529 -1.1806 20 8 2.0253 1.4022 -2.3504 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.7367 0.5867 2.7298 27 1 2.3094 2.1961 4.5695 28 1 3.3225 5.0729 0.0120 29 1 2.2771 7.0880 -1.5850 30 1 1.1258 1.5080 -2.6889 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:46 Heat of formation + Delta-G solvation = -24.332485 kcal Electronic energy + Delta-G solvation = -15649.050972 eV Core-core repulsion = 13113.798421 eV Total energy + Delta-G solvation = -2535.252552 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.96831 -36.26321 -34.81310 -33.11680 -32.31488 -28.69861 -27.97424 -25.20070 -23.03691 -22.26272 -20.39162 -19.56678 -17.19895 -16.67999 -16.38853 -15.35773 -15.06025 -14.14475 -13.86044 -13.33603 -13.13739 -12.96459 -12.46207 -12.06190 -11.88820 -11.75618 -11.57410 -11.40636 -11.04537 -10.76372 -10.55595 -10.49745 -10.25238 -9.84048 -9.59340 -9.16800 -9.12303 -8.32417 -7.34299 -7.01209 -6.60798 -4.50232 1.86728 2.58345 2.70473 2.87134 2.96632 3.02893 3.10254 3.49158 3.76259 4.38023 5.16148 5.42964 5.59194 5.63682 5.84046 5.94441 6.08568 6.21801 6.30388 6.32919 6.62496 6.68097 6.80450 6.90871 6.97972 7.11873 7.22700 7.51912 7.70295 7.73383 7.91455 8.22486 8.51687 8.56768 8.94082 9.89635 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.009234 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.062965 B = 3031.410913 C = 4151.136801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C -0.042 4.042 4 C -0.197 4.197 5 C -0.071 4.071 6 C -0.266 4.266 7 S -0.004 6.004 8 C -0.072 4.072 9 C -0.157 4.157 10 C 0.109 3.891 11 C -0.426 4.426 12 H 0.091 0.909 13 C 0.070 3.930 14 N -0.772 5.772 15 Si 0.914 3.086 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.257 1.257 19 C 0.015 3.985 20 O -0.492 6.492 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.125 0.875 29 H 0.287 0.713 30 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -3.988 1.760 4.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.045 4.045 4 C -0.203 4.203 5 C -0.101 4.101 6 C -0.399 4.399 7 S 0.256 5.744 8 C -0.186 4.186 9 C -0.184 4.184 10 C 0.102 3.898 11 C -0.454 4.454 12 H 0.109 0.891 13 C -0.151 4.151 14 N -0.395 5.395 15 Si 0.737 3.263 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.180 1.180 19 C -0.030 4.030 20 O -0.299 6.299 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.135 0.865 27 H 0.161 0.839 28 H 0.142 0.858 29 H 0.098 0.902 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.871 -2.642 2.657 3.847 hybrid contribution -0.742 -0.549 -1.128 1.457 sum -1.613 -3.191 1.529 3.889 Atomic orbital electron populations 1.21657 0.95726 1.00399 1.01905 1.20353 0.95344 0.94125 1.01787 1.19241 0.99223 0.94701 0.91310 1.17402 1.16312 0.94384 0.92177 1.19678 0.99811 0.98975 0.91600 1.24447 1.15949 0.98029 1.01450 1.83639 1.74389 1.16737 0.99643 1.22307 1.04117 0.96562 0.95653 1.20423 1.08718 1.00999 0.88247 1.17704 0.88972 0.89812 0.93303 1.19612 1.38568 0.91085 0.96157 0.89052 1.26096 0.92932 0.98231 0.97826 1.69863 1.28590 1.09491 1.31563 0.86187 0.80382 0.78978 0.80716 1.19257 1.19752 1.18042 1.17806 1.08299 0.93146 0.83761 1.84742 1.34226 1.73002 1.37969 0.93371 0.92863 0.92984 0.91138 0.92199 0.86465 0.83892 0.85766 0.90225 0.78556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.90 37.16 0.37 -1.77 16 2 C -0.08 -1.39 5.59 -27.88 -0.16 -1.54 16 3 C -0.04 -0.92 5.17 -104.13 -0.54 -1.46 16 4 C -0.20 -4.50 5.85 -106.84 -0.62 -5.13 16 5 C -0.07 -1.41 9.55 -40.64 -0.39 -1.79 16 6 C -0.27 -5.08 11.09 28.81 0.32 -4.76 16 7 S 0.00 -0.08 23.29 -107.50 -2.50 -2.58 16 8 C -0.07 -1.74 6.46 -38.56 -0.25 -1.99 16 9 C -0.16 -4.08 8.71 -38.58 -0.34 -4.42 16 10 C 0.11 2.80 5.57 -106.78 -0.59 2.20 16 11 C -0.43 -10.68 8.69 -37.97 -0.33 -11.01 16 12 H 0.09 2.24 7.64 -52.49 -0.40 1.84 16 13 C 0.07 1.66 5.13 -17.32 -0.09 1.57 16 14 N -0.77 -18.92 10.99 55.55 0.61 -18.31 16 15 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 16 16 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 19 C 0.02 0.36 6.63 -39.13 -0.26 0.10 16 20 O -0.49 -10.34 11.66 -19.18 -0.22 -10.56 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.23 7.44 -51.92 -0.39 0.84 16 25 H 0.06 0.99 7.11 -51.93 -0.37 0.62 16 26 H 0.12 2.01 7.33 -52.49 -0.38 1.63 16 27 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.12 3.33 6.18 -52.48 -0.32 3.00 16 29 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 30 H 0.36 6.21 9.06 45.56 0.41 6.63 16 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -27.13 270.70 -8.22 -35.35 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -2.28 Total: 9.40 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -2.88 Total: -30.00 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.61 Total: -18.31 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.22 Total: -10.56 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.50 Total: -2.58 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.13 -8.22 -35.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.022 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds