Wall clock time and date at job start Mon Mar 30 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47524 * 2 1 4 4 C 1.41843 * 119.58693 * 90.00301 * 3 2 1 5 5 C 1.40531 * 128.58637 * 359.95456 * 4 3 2 6 6 C 1.32440 * 115.88410 * 180.02562 * 5 4 3 7 7 S 1.75462 * 110.87265 * 0.02562 * 6 5 4 8 8 C 1.40407 * 119.08229 * 180.02562 * 4 3 2 9 9 C 1.38803 * 120.26165 * 359.97438 * 8 4 3 10 10 C 1.40334 * 120.05564 * 0.02590 * 9 8 4 11 11 C 1.40860 * 120.23944 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99955 * 154.80389 * 11 10 9 13 13 C 1.39895 * 120.00104 * 334.80609 * 11 10 9 14 14 N 1.30910 * 119.99995 * 342.25702 * 13 11 10 15 15 Si 1.86798 * 120.00342 * 162.25851 * 13 11 10 16 16 H 1.48507 * 109.47030 * 94.64443 * 15 13 11 17 17 H 1.48494 * 109.47273 * 214.64316 * 15 13 11 18 18 H 1.48504 * 109.46994 * 334.64508 * 15 13 11 19 19 C 1.35755 * 119.58484 * 270.02740 * 3 2 1 20 20 O 1.35821 * 119.87628 * 359.97279 * 19 3 2 21 21 H 1.08994 * 109.47428 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46303 * 299.99889 * 1 2 3 23 23 H 1.08993 * 109.46890 * 59.99551 * 1 2 3 24 24 H 1.09008 * 109.46801 * 240.00086 * 2 1 3 25 25 H 1.08997 * 109.47377 * 120.00452 * 2 1 3 26 26 H 1.08001 * 122.05431 * 0.04695 * 5 4 3 27 27 H 1.08001 * 124.56169 * 180.26783 * 6 5 4 28 28 H 1.08004 * 119.97263 * 179.97438 * 9 8 4 29 29 H 0.96996 * 120.00129 * 179.97438 * 14 13 11 30 30 H 0.96695 * 114.00080 * 90.00581 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2660 2.0810 1.2335 5 6 2.0911 1.5887 2.5380 6 6 2.3879 2.4290 3.5178 7 16 2.9326 3.9689 2.8771 8 6 2.7336 3.4049 1.2211 9 6 2.9632 4.0544 0.0161 10 6 2.7279 3.3892 -1.1969 11 6 2.9591 4.0448 -2.4220 12 1 3.1780 3.4695 -3.3095 13 6 2.9053 5.4411 -2.4892 14 7 2.3141 6.1199 -1.5386 15 14 3.6770 6.3371 -3.9352 16 1 2.6414 6.5939 -4.9682 17 1 4.2445 7.6286 -3.4716 18 1 4.7585 5.5011 -4.5155 19 6 2.2554 2.0529 -1.1806 20 8 2.0253 1.4022 -2.3504 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.7367 0.5867 2.7298 27 1 2.3094 2.1961 4.5695 28 1 3.3225 5.0729 0.0120 29 1 2.2771 7.0880 -1.5850 30 1 1.1258 1.5080 -2.6889 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:45 Heat of formation + Delta-G solvation = -39.760409 kcal Electronic energy + Delta-G solvation = -15649.719977 eV Core-core repulsion = 13113.798421 eV Total energy + Delta-G solvation = -2535.921557 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68044 -37.94530 -36.55528 -34.60931 -34.02464 -30.44782 -29.58816 -26.96426 -24.52757 -23.98105 -22.04154 -21.24526 -18.96937 -18.40450 -18.06368 -17.00618 -16.73775 -15.84389 -15.43388 -14.82909 -14.63983 -14.55794 -14.11318 -13.75666 -13.48256 -13.32472 -13.15690 -12.92730 -12.60821 -12.36013 -12.12823 -11.92855 -11.85578 -11.55330 -11.26800 -10.89613 -10.83255 -10.03452 -9.13352 -8.76426 -8.31987 -6.37063 0.19328 0.78346 0.99953 1.30513 1.36939 1.43977 1.51183 1.81627 2.14787 2.63068 3.38504 3.82267 4.08232 4.27074 4.39494 4.55415 4.60376 4.83298 4.89387 4.96766 5.04855 5.10567 5.24368 5.29696 5.35259 5.45262 5.50322 5.76161 5.93453 6.01706 6.11045 6.39432 6.71653 6.74842 7.26623 8.17233 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.009234 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.062965 B = 3031.410913 C = 4151.136801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.046 4.046 4 C -0.203 4.203 5 C -0.084 4.084 6 C -0.242 4.242 7 S 0.000 6.000 8 C -0.105 4.105 9 C -0.186 4.186 10 C 0.079 3.921 11 C -0.460 4.460 12 H 0.086 0.914 13 C 0.033 3.967 14 N -0.807 5.807 15 Si 0.985 3.015 16 H -0.257 1.257 17 H -0.266 1.266 18 H -0.259 1.259 19 C 0.001 3.999 20 O -0.493 6.493 21 H 0.080 0.920 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.186 0.814 28 H 0.102 0.898 29 H 0.293 0.707 30 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -5.545 2.810 6.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 C -0.049 4.049 4 C -0.209 4.209 5 C -0.113 4.113 6 C -0.375 4.375 7 S 0.259 5.741 8 C -0.219 4.219 9 C -0.212 4.212 10 C 0.072 3.928 11 C -0.489 4.489 12 H 0.104 0.896 13 C -0.184 4.184 14 N -0.432 5.432 15 Si 0.805 3.195 16 H -0.181 1.181 17 H -0.190 1.190 18 H -0.182 1.182 19 C -0.045 4.045 20 O -0.302 6.302 21 H 0.099 0.901 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.171 0.829 27 H 0.203 0.797 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.466 -4.205 3.707 5.794 hybrid contribution -0.597 -0.169 -1.255 1.400 sum -2.063 -4.374 2.451 5.422 Atomic orbital electron populations 1.21617 0.93760 1.02356 1.01371 1.20406 0.96893 0.91139 1.02667 1.19684 0.98038 0.96759 0.90421 1.17928 1.15074 0.93849 0.94009 1.19922 1.00468 1.00837 0.90069 1.24992 1.13061 0.96039 1.03389 1.83612 1.74239 1.18441 0.97786 1.22668 1.04701 0.97796 0.96769 1.20290 1.10936 1.00493 0.89521 1.18080 0.89746 0.91309 0.93625 1.19738 1.40957 0.92207 0.95995 0.89566 1.26901 0.92662 0.98412 1.00428 1.69916 1.29782 1.10000 1.33475 0.85143 0.79425 0.77590 0.77377 1.18088 1.19044 1.18228 1.17945 1.08691 0.92768 0.85086 1.84671 1.35710 1.72409 1.37425 0.90125 0.93406 0.93578 0.91004 0.90516 0.82906 0.79709 0.88009 0.89639 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.90 71.98 0.71 -2.99 16 2 C -0.07 -2.41 5.59 29.85 0.17 -2.24 16 3 C -0.05 -2.00 5.17 -19.55 -0.10 -2.10 16 4 C -0.20 -9.03 5.85 -21.30 -0.12 -9.16 16 5 C -0.08 -3.05 9.55 21.71 0.21 -2.84 16 6 C -0.24 -8.35 11.09 66.70 0.74 -7.61 16 7 S 0.00 -0.02 23.29 -56.49 -1.32 -1.33 16 8 C -0.10 -5.16 6.46 22.93 0.15 -5.01 16 9 C -0.19 -10.13 8.71 22.92 0.20 -9.94 16 10 C 0.08 4.23 5.57 -21.26 -0.12 4.11 16 11 C -0.46 -24.23 8.69 23.31 0.20 -24.03 16 12 H 0.09 4.43 7.64 -2.91 -0.02 4.41 16 13 C 0.03 1.64 5.13 85.23 0.44 2.07 16 14 N -0.81 -41.48 10.99 21.82 0.24 -41.24 16 15 Si 0.98 37.16 29.60 68.60 2.03 39.19 16 16 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 17 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 19 C 0.00 0.03 6.63 22.56 0.15 0.18 16 20 O -0.49 -20.88 11.66 -91.54 -1.07 -21.95 16 21 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 2.34 7.44 -2.38 -0.02 2.32 16 25 H 0.08 2.25 7.11 -2.39 -0.02 2.23 16 26 H 0.15 4.48 7.33 -2.91 -0.02 4.46 16 27 H 0.19 4.82 8.06 -2.91 -0.02 4.80 16 28 H 0.10 5.84 6.18 -2.91 -0.02 5.82 16 29 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 30 H 0.38 13.04 9.06 -74.06 -0.67 12.37 16 Total: -1.00 -60.71 270.70 3.01 -57.70 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.50 Total: 27.16 kcal Atomic # 6 Polarization: -62.16 SS G_CDS: 2.62 Total: -59.54 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.24 Total: -41.24 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.07 Total: -21.95 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.32 Total: -1.33 kcal Total: -60.71 3.01 -57.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.944 kcal (2) G-P(sol) polarization free energy of solvation -60.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds