Wall clock time and date at job start Mon Mar 30 2020 05:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47563 * 2 1 4 4 C 1.33671 * 122.17042 * 267.61821 * 3 2 1 5 5 O 1.35549 * 124.70895 * 359.96230 * 4 3 2 6 6 S 1.75497 * 110.57784 * 179.97438 * 4 3 2 7 7 C 1.76067 * 91.55821 * 0.02562 * 6 4 3 8 8 C 1.39359 * 130.52851 * 179.97438 * 7 6 4 9 9 C 1.38288 * 121.49246 * 180.02562 * 8 7 6 10 10 C 1.37533 * 121.10255 * 359.97438 * 9 8 7 11 11 C 1.40363 * 120.12382 * 0.26944 * 10 9 8 12 12 C 1.40533 * 120.41953 * 179.72997 * 11 10 9 13 13 H 1.08001 * 120.00559 * 144.43262 * 12 11 10 14 14 C 1.39922 * 119.99623 * 324.43591 * 12 11 10 15 15 N 1.30899 * 120.00028 * 168.54352 * 14 12 11 16 16 Si 1.86795 * 120.00061 * 348.54567 * 14 12 11 17 17 H 1.48495 * 109.47188 * 90.18935 * 16 14 12 18 18 H 1.48499 * 109.47088 * 210.18928 * 16 14 12 19 19 H 1.48503 * 109.47461 * 330.18776 * 16 14 12 20 20 C 1.39749 * 122.16866 * 87.59647 * 3 2 1 21 21 H 1.09000 * 109.46713 * 299.99938 * 1 2 3 22 22 H 1.09001 * 109.47063 * 59.99637 * 1 2 3 23 23 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47039 * 239.99870 * 2 1 3 25 25 H 1.09004 * 109.47457 * 120.00680 * 2 1 3 26 26 H 0.96693 * 114.00458 * 89.99674 * 5 4 3 27 27 H 1.08007 * 119.25623 * 0.04258 * 8 7 6 28 28 H 1.07999 * 119.44922 * 179.97438 * 9 8 7 29 29 H 1.08002 * 119.93923 * 180.02562 * 10 9 8 30 30 H 0.96992 * 119.99859 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3140 2.0761 -1.1305 5 8 2.1861 1.5567 -2.3760 6 16 2.8727 3.7020 -0.7782 7 6 2.7030 3.4366 0.9541 8 6 2.9562 4.2861 2.0295 9 6 2.7552 3.8779 3.3354 10 6 2.2956 2.6137 3.6218 11 6 2.0270 1.7095 2.5824 12 6 1.5625 0.4142 2.8683 13 1 0.8496 -0.0612 2.2110 14 6 2.0238 -0.2594 4.0046 15 7 1.4351 -1.3608 4.3966 16 14 3.4798 0.4132 4.9623 17 1 2.9935 1.3379 6.0176 18 1 4.2200 -0.7101 5.5912 19 1 4.3833 1.1464 4.0396 20 6 2.2337 2.1388 1.1819 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.3168 1.6998 -2.7745 27 1 3.3174 5.2859 1.8387 28 1 2.9626 4.5633 4.1438 29 1 2.1449 2.3147 4.6487 30 1 1.7551 -1.8279 5.1841 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314574.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:33 Heat of formation + Delta-G solvation = -29.493521 kcal Electronic energy + Delta-G solvation = -15838.992698 eV Core-core repulsion = 13303.516347 eV Total energy + Delta-G solvation = -2535.476351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49102 -38.69670 -35.94560 -35.76929 -33.06378 -31.92871 -29.25850 -26.75978 -25.18855 -23.21646 -22.86467 -20.51574 -20.01421 -18.60697 -17.88222 -17.11367 -16.57861 -16.30938 -15.74204 -15.26811 -14.78236 -14.55044 -14.24038 -14.02400 -13.63108 -13.53315 -13.14690 -13.01351 -12.68394 -12.28584 -12.11286 -11.91274 -11.61900 -11.45947 -11.36453 -10.98604 -10.95326 -9.98857 -9.06141 -8.95561 -8.53287 -6.45339 -0.09969 0.66340 0.67991 1.15340 1.27315 1.32293 1.47985 1.60535 2.10091 2.53007 3.34313 3.44501 4.15206 4.27769 4.33129 4.41274 4.58978 4.59952 4.76437 4.84461 4.99070 5.09137 5.13556 5.18652 5.34064 5.41805 5.55247 5.73856 5.83490 5.93332 6.04424 6.30254 6.62311 6.69235 6.71732 8.06409 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.010691 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.675159 B = 2618.406407 C = 3537.361116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.066 4.066 4 C -0.047 4.047 5 O -0.451 6.451 6 S 0.033 5.967 7 C -0.090 4.090 8 C -0.221 4.221 9 C -0.043 4.043 10 C -0.277 4.277 11 C 0.116 3.884 12 C -0.450 4.450 13 H 0.104 0.896 14 C 0.054 3.946 15 N -0.824 5.824 16 Si 0.956 3.044 17 H -0.251 1.251 18 H -0.280 1.280 19 H -0.261 1.261 20 C -0.180 4.180 21 H 0.039 0.961 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.396 0.604 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.110 0.890 30 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 4.791 -4.742 6.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 C -0.079 4.079 4 C -0.206 4.206 5 O -0.261 6.261 6 S 0.295 5.705 7 C -0.205 4.205 8 C -0.246 4.246 9 C -0.063 4.063 10 C -0.299 4.299 11 C 0.111 3.889 12 C -0.477 4.477 13 H 0.121 0.879 14 C -0.164 4.164 15 N -0.448 5.448 16 Si 0.780 3.220 17 H -0.176 1.176 18 H -0.206 1.206 19 H -0.185 1.185 20 C -0.186 4.186 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.253 0.747 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.127 0.873 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.404 5.505 -5.536 7.933 hybrid contribution -0.502 -1.036 1.243 1.694 sum 0.902 4.469 -4.294 6.263 Atomic orbital electron populations 1.21570 0.94025 1.01840 1.01192 1.20444 0.96770 0.91173 1.02724 1.19187 0.99665 0.97987 0.91073 1.21552 1.16240 0.95514 0.87312 1.84720 1.39493 1.76626 1.25266 1.83452 1.73620 1.14306 0.99102 1.22496 1.03763 0.97831 0.96455 1.19951 1.14269 0.99745 0.90661 1.20811 0.94310 0.95300 0.95924 1.20992 1.15389 0.95671 0.97848 1.18726 0.88002 0.92965 0.89193 1.19873 1.21833 0.99147 1.06880 0.87851 1.26767 0.99215 0.94379 0.96068 1.69661 1.37208 1.15381 1.22531 0.85612 0.79046 0.78080 0.79282 1.17644 1.20625 1.18509 1.18975 1.11461 0.94371 0.93834 0.94233 0.91841 0.91610 0.91071 0.90632 0.74717 0.85747 0.84413 0.87257 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.15 71.98 0.66 -3.84 16 2 C -0.07 -2.83 5.28 29.85 0.16 -2.67 16 3 C -0.07 -2.79 5.09 -20.54 -0.10 -2.90 16 4 C -0.05 -1.80 7.48 66.78 0.50 -1.30 16 5 O -0.45 -14.25 13.08 -88.55 -1.16 -15.41 16 6 S 0.03 1.23 23.29 -56.49 -1.32 -0.08 16 7 C -0.09 -3.87 6.47 22.94 0.15 -3.73 16 8 C -0.22 -8.81 10.01 22.55 0.23 -8.58 16 9 C -0.04 -1.69 9.96 22.12 0.22 -1.47 16 10 C -0.28 -12.53 7.07 22.62 0.16 -12.37 16 11 C 0.12 5.69 5.21 -19.63 -0.10 5.58 16 12 C -0.45 -22.79 7.66 23.24 0.18 -22.61 16 13 H 0.10 5.35 4.08 -2.91 -0.01 5.34 16 14 C 0.05 2.64 5.46 85.24 0.47 3.11 16 15 N -0.82 -40.99 13.93 21.83 0.30 -40.69 16 16 Si 0.96 40.36 24.52 68.60 1.68 42.04 16 17 H -0.25 -9.92 6.62 99.48 0.66 -9.26 16 18 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.26 -11.70 6.89 99.48 0.69 -11.02 16 20 C -0.18 -8.41 6.01 -19.95 -0.12 -8.53 16 21 H 0.04 1.56 6.98 -2.39 -0.02 1.55 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 24 H 0.07 2.56 7.78 -2.38 -0.02 2.54 16 25 H 0.08 3.42 5.41 -2.38 -0.01 3.41 16 26 H 0.40 8.46 9.06 -74.06 -0.67 7.79 16 27 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 28 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.11 4.81 4.88 -2.91 -0.01 4.79 16 30 H 0.30 13.40 8.30 -92.71 -0.77 12.63 16 Total: -1.00 -56.07 259.18 2.35 -53.72 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.45 Total: 19.73 kcal Atomic # 6 Polarization: -61.69 SS G_CDS: 2.39 Total: -59.30 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.30 Total: -40.69 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -1.16 Total: -15.41 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.68 Total: 42.04 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -1.32 Total: -0.08 kcal Total: -56.07 2.35 -53.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314574.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.224 kcal (2) G-P(sol) polarization free energy of solvation -56.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds