Wall clock time and date at job start Mon Mar 30 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47064 * 2 1 4 4 C 1.37835 * 119.49143 * 265.02002 * 3 2 1 5 5 C 1.39819 * 121.56673 * 180.02562 * 4 3 2 6 6 S 1.76096 * 130.51455 * 179.97438 * 5 4 3 7 7 C 1.75500 * 91.51528 * 179.97438 * 6 5 4 8 8 C 1.32634 * 110.66734 * 359.74005 * 7 6 5 9 9 C 1.39586 * 120.17689 * 359.95439 * 5 4 3 10 10 C 1.47855 * 118.13146 * 0.02562 * 9 5 4 11 11 C 1.40409 * 120.43072 * 179.97438 * 10 9 5 12 12 H 1.07997 * 120.00158 * 140.69428 * 11 10 9 13 13 C 1.39974 * 119.99650 * 320.69277 * 11 10 9 14 14 N 1.30890 * 120.00544 * 339.88262 * 13 11 10 15 15 Si 1.86806 * 119.99671 * 159.88255 * 13 11 10 16 16 H 1.48493 * 109.47109 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47053 * 120.00181 * 15 13 11 18 18 H 1.48505 * 109.46852 * 240.00079 * 15 13 11 19 19 C 1.38309 * 119.49711 * 84.99689 * 3 2 1 20 20 O 1.35718 * 120.01161 * 359.97438 * 19 3 2 21 21 H 1.09001 * 109.46941 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47510 * 300.00474 * 1 2 3 23 23 H 1.09005 * 109.47271 * 59.99995 * 1 2 3 24 24 H 1.09004 * 109.47419 * 239.99891 * 2 1 3 25 25 H 1.08998 * 109.46922 * 119.99425 * 2 1 3 26 26 H 1.07995 * 119.21410 * 0.02562 * 4 3 2 27 27 H 1.08009 * 124.66598 * 180.02562 * 7 6 5 28 28 H 1.07998 * 122.10361 * 180.27430 * 8 7 6 29 29 H 0.96991 * 120.00451 * 180.02562 * 14 13 11 30 30 H 0.96702 * 113.99798 * 266.12940 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3567 2.0259 -1.1952 5 6 2.8271 3.3416 -1.2456 6 16 3.3055 4.3336 -2.6197 7 6 3.6864 5.6871 -1.5694 8 6 3.4526 5.3760 -0.3014 9 6 2.9784 4.0782 -0.0696 10 6 2.6292 3.4267 1.2109 11 6 2.7634 4.1228 2.4228 12 1 2.0198 4.0068 3.1974 13 6 3.8611 4.9670 2.6271 14 7 4.9405 4.8247 1.9006 15 14 3.7854 6.2969 3.9367 16 1 2.4648 6.2501 4.6140 17 1 4.8622 6.0712 4.9342 18 1 3.9690 7.6271 3.3025 19 6 2.1603 2.0979 1.1992 20 8 1.8341 1.4828 2.3642 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 2.2448 1.4705 -2.1146 27 1 4.0558 6.6435 -1.9092 28 1 3.6203 6.0778 0.5021 29 1 5.7012 5.4094 2.0424 30 1 0.9265 1.6469 2.6549 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314785.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:17 Heat of formation + Delta-G solvation = -17.648572 kcal Electronic energy + Delta-G solvation = -15765.598064 eV Core-core repulsion = 13230.635349 eV Total energy + Delta-G solvation = -2534.962716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.65435 -36.22934 -34.52994 -33.49232 -31.68286 -29.44103 -27.19057 -25.23222 -23.23074 -21.69570 -20.75420 -19.20550 -17.46468 -16.63018 -15.88416 -15.60795 -14.74397 -14.06442 -14.02074 -13.52701 -12.89659 -12.68602 -12.50255 -12.19930 -11.88357 -11.72284 -11.55889 -11.36279 -10.99622 -10.76977 -10.61139 -10.38521 -10.31998 -9.81062 -9.47133 -9.32934 -8.90400 -8.12531 -7.10158 -7.05463 -6.54072 -4.51650 1.89152 2.53156 2.69817 2.97632 2.99507 3.03240 3.09783 3.57978 3.78701 4.40453 5.12643 5.46250 5.56360 5.67445 5.91320 6.00633 6.19530 6.25839 6.32119 6.38433 6.62353 6.69598 6.79065 6.92829 6.98685 7.14525 7.27434 7.57519 7.69741 7.70473 7.93315 8.16463 8.46139 8.57731 9.05950 9.96041 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.011303 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.120888 B = 2476.713610 C = 3827.946865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.038 4.038 4 C -0.208 4.208 5 C -0.080 4.080 6 S -0.007 6.007 7 C -0.271 4.271 8 C -0.030 4.030 9 C -0.130 4.130 10 C 0.149 3.851 11 C -0.443 4.443 12 H 0.089 0.911 13 C 0.078 3.922 14 N -0.767 5.767 15 Si 0.903 3.097 16 H -0.257 1.257 17 H -0.271 1.271 18 H -0.269 1.269 19 C -0.031 4.031 20 O -0.483 6.483 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.286 0.714 30 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 -0.778 -1.876 4.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.041 4.041 4 C -0.232 4.232 5 C -0.196 4.196 6 S 0.253 5.747 7 C -0.403 4.403 8 C -0.059 4.059 9 C -0.137 4.137 10 C 0.143 3.857 11 C -0.471 4.471 12 H 0.107 0.893 13 C -0.143 4.143 14 N -0.389 5.389 15 Si 0.726 3.274 16 H -0.180 1.180 17 H -0.197 1.197 18 H -0.194 1.194 19 C -0.079 4.079 20 O -0.288 6.288 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.161 0.839 28 H 0.144 0.856 29 H 0.097 0.903 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.209 -1.012 -3.504 4.858 hybrid contribution -0.226 1.152 2.019 2.335 sum -3.435 0.141 -1.485 3.745 Atomic orbital electron populations 1.21650 0.95731 1.00460 1.01756 1.20370 0.95306 0.94063 1.01773 1.19405 0.97605 0.94880 0.92196 1.19240 1.14593 0.93397 0.96007 1.22303 1.04538 0.97961 0.94751 1.83372 1.72083 1.07897 1.11345 1.24578 1.17418 1.01995 0.96356 1.19798 0.94958 0.96054 0.95060 1.18927 1.09633 0.93346 0.91842 1.18654 0.86976 0.89053 0.91008 1.19280 1.06608 1.20972 1.00229 0.89330 1.25935 0.94470 0.96882 0.97009 1.69898 1.02252 1.32089 1.34709 0.86333 0.79908 0.80392 0.80717 1.18048 1.19656 1.19375 1.18015 1.14740 0.91182 0.83944 1.84821 1.32605 1.72458 1.38956 0.93353 0.92911 0.92993 0.92349 0.91070 0.88567 0.83868 0.85590 0.90281 0.79870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 37.16 0.37 -1.69 16 2 C -0.08 -1.37 5.74 -27.88 -0.16 -1.53 16 3 C -0.04 -0.82 5.12 -104.74 -0.54 -1.36 16 4 C -0.21 -4.68 9.61 -39.14 -0.38 -5.05 16 5 C -0.08 -1.92 6.49 -38.49 -0.25 -2.17 16 6 S -0.01 -0.14 23.30 -107.50 -2.50 -2.65 16 7 C -0.27 -5.76 11.11 28.83 0.32 -5.44 16 8 C -0.03 -0.70 8.25 -40.78 -0.34 -1.04 16 9 C -0.13 -3.31 5.50 -104.76 -0.58 -3.88 16 10 C 0.15 3.84 5.51 -104.14 -0.57 3.26 16 11 C -0.44 -11.16 8.43 -38.11 -0.32 -11.48 16 12 H 0.09 2.13 7.91 -52.49 -0.42 1.72 16 13 C 0.08 1.87 3.85 -17.30 -0.07 1.81 16 14 N -0.77 -19.18 10.81 55.55 0.60 -18.58 16 15 Si 0.90 17.73 29.61 -169.99 -5.03 12.69 16 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 C -0.03 -0.75 6.69 -38.55 -0.26 -1.01 16 20 O -0.48 -10.49 12.00 -18.86 -0.23 -10.71 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.95 8.02 -51.93 -0.42 0.54 16 25 H 0.07 1.27 7.64 -51.93 -0.40 0.87 16 26 H 0.10 1.96 8.03 -52.49 -0.42 1.54 16 27 H 0.14 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.13 2.99 6.08 -52.49 -0.32 2.67 16 29 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 30 H 0.35 6.08 9.06 45.56 0.41 6.49 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -27.70 270.76 -8.23 -35.93 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.38 Total: 8.82 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -2.77 Total: -29.58 kcal Atomic # 7 Polarization: -19.18 SS G_CDS: 0.60 Total: -18.58 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.23 Total: -10.71 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.50 Total: -2.65 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.70 -8.23 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314785.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.283 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds