Wall clock time and date at job start Mon Mar 30 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47397 * 2 1 4 4 C 1.37846 * 119.55224 * 265.00314 * 3 2 1 5 5 C 1.37836 * 120.74236 * 180.02562 * 4 3 2 6 6 C 1.40475 * 119.88272 * 359.97438 * 5 4 3 7 7 C 1.40963 * 120.10426 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99946 * 204.96103 * 7 6 5 9 9 C 1.39906 * 119.99853 * 25.24654 * 7 6 5 10 10 N 1.30887 * 120.00064 * 17.48331 * 9 7 6 11 11 Si 1.86799 * 120.00038 * 197.48621 * 9 7 6 12 12 H 1.48497 * 109.46849 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46828 * 119.99558 * 11 9 7 14 14 H 1.48494 * 109.47338 * 239.99482 * 11 9 7 15 15 C 1.42062 * 119.79243 * 0.27636 * 6 5 4 16 16 S 1.75894 * 130.46083 * 180.32530 * 15 6 5 17 17 C 1.75289 * 92.22212 * 179.53227 * 16 15 6 18 18 O 1.35748 * 124.36174 * 179.76927 * 17 16 15 19 19 C 1.32526 * 111.27513 * 359.79550 * 17 16 15 20 20 C 1.39441 * 119.67871 * 359.42785 * 15 6 5 21 21 H 1.09001 * 109.47511 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46694 * 300.00348 * 1 2 3 23 23 H 1.08996 * 109.47213 * 59.99453 * 1 2 3 24 24 H 1.09006 * 109.46694 * 239.99652 * 2 1 3 25 25 H 1.09003 * 109.46868 * 120.00708 * 2 1 3 26 26 H 1.07999 * 119.62551 * 359.97124 * 4 3 2 27 27 H 1.08003 * 120.05988 * 179.97438 * 5 4 3 28 28 H 0.96994 * 119.99920 * 180.02562 * 10 9 7 29 29 H 0.96701 * 114.00178 * 270.02679 * 18 17 16 30 30 H 1.08004 * 122.62113 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3576 2.0269 -1.1946 5 6 2.8198 3.3251 -1.2230 6 6 2.9627 4.0436 -0.0244 7 6 3.4346 5.3717 -0.0482 8 1 3.9211 5.7875 0.8217 9 6 3.2671 6.1531 -1.1965 10 7 2.3959 5.7999 -2.1072 11 14 4.2871 7.7005 -1.4302 12 1 5.1917 7.8775 -0.2660 13 1 5.0942 7.5787 -2.6709 14 1 3.3859 8.8756 -1.5395 15 6 2.6353 3.4258 1.2122 16 16 2.6986 4.0538 2.8540 17 6 2.1033 2.5481 3.5257 18 8 1.9024 2.3263 4.8498 19 6 1.8751 1.6541 2.5744 20 6 2.1630 2.1139 1.2248 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 2.2497 1.4781 -2.1185 27 1 3.0717 3.7892 -2.1652 28 1 2.2801 6.3414 -2.9035 29 1 2.6739 1.9686 5.3101 30 1 1.5040 0.6619 2.7848 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:25 Heat of formation + Delta-G solvation = -23.101329 kcal Electronic energy + Delta-G solvation = -15364.886626 eV Core-core repulsion = 12829.687461 eV Total energy + Delta-G solvation = -2535.199165 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.51031 -37.35838 -34.59309 -33.27378 -32.15214 -29.17967 -27.25224 -25.47630 -22.62019 -22.25535 -20.38883 -19.88296 -17.89802 -17.13998 -15.67473 -15.30929 -14.83408 -14.70902 -14.09904 -13.48445 -13.23783 -12.74701 -12.61391 -12.09082 -11.96050 -11.63709 -11.60212 -11.24619 -11.15657 -10.87807 -10.44864 -10.35476 -9.83922 -9.80831 -9.73486 -9.30026 -9.19959 -8.22180 -7.25230 -6.95420 -6.73423 -4.45176 1.72773 2.35880 2.60890 2.98082 3.01080 3.06854 3.16289 3.37107 3.83027 4.46127 4.67480 5.38997 5.66144 5.69059 5.96389 6.05116 6.10990 6.35214 6.36322 6.44662 6.52355 6.53780 6.77499 6.85571 7.04256 7.13829 7.30288 7.54650 7.75281 7.77557 7.93434 8.06817 8.43241 8.65632 8.72421 10.01050 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.008879 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.121086 B = 3152.903190 C = 4305.997420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.180 4.180 4 C -0.080 4.080 5 C -0.167 4.167 6 C 0.145 3.855 7 C -0.452 4.452 8 H 0.081 0.919 9 C 0.077 3.923 10 N -0.781 5.781 11 Si 0.910 3.090 12 H -0.258 1.258 13 H -0.269 1.269 14 H -0.272 1.272 15 C -0.201 4.201 16 S 0.032 5.968 17 C 0.001 3.999 18 O -0.464 6.464 19 C -0.143 4.143 20 C -0.036 4.036 21 H 0.041 0.959 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.284 0.716 29 H 0.381 0.619 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -5.002 3.561 6.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.184 4.184 4 C -0.099 4.099 5 C -0.190 4.190 6 C 0.139 3.861 7 C -0.481 4.481 8 H 0.099 0.901 9 C -0.142 4.142 10 N -0.405 5.405 11 Si 0.734 3.266 12 H -0.182 1.182 13 H -0.194 1.194 14 H -0.197 1.197 15 C -0.316 4.316 16 S 0.293 5.707 17 C -0.158 4.158 18 O -0.272 6.272 19 C -0.177 4.177 20 C -0.042 4.042 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.095 0.905 29 H 0.235 0.765 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.639 -3.334 3.946 5.205 hybrid contribution 0.328 -0.751 -0.599 1.015 sum 0.967 -4.085 3.347 5.369 Atomic orbital electron populations 1.21777 0.96556 0.99799 1.01969 1.20153 0.94772 0.94315 1.00451 1.18884 1.12816 0.95609 0.91122 1.20396 0.99020 0.95322 0.95180 1.21131 1.06704 0.92987 0.98226 1.16964 0.88596 0.92436 0.88091 1.19553 1.32857 0.96275 0.99438 0.90088 1.25922 0.93678 0.99808 0.94833 1.69850 1.25180 1.37335 1.08152 0.86219 0.80422 0.80400 0.79598 1.18168 1.19444 1.19750 1.22388 1.15933 0.97722 0.95555 1.83755 1.71039 1.15391 1.00563 1.22136 1.09682 0.97896 0.86104 1.84820 1.40141 1.85288 1.16991 1.21365 1.04570 0.99733 0.92068 1.18329 1.01255 0.93122 0.91469 0.93997 0.93038 0.92940 0.92750 0.93000 0.88722 0.85733 0.90541 0.76535 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.90 37.16 0.37 -1.93 16 2 C -0.06 -1.03 5.82 -27.88 -0.16 -1.19 16 3 C -0.18 -3.89 5.21 -103.59 -0.54 -4.43 16 4 C -0.08 -1.80 9.58 -39.87 -0.38 -2.18 16 5 C -0.17 -4.19 8.67 -38.89 -0.34 -4.53 16 6 C 0.14 3.79 5.59 -106.56 -0.60 3.19 16 7 C -0.45 -11.71 8.82 -37.93 -0.33 -12.04 16 8 H 0.08 2.06 7.74 -52.49 -0.41 1.65 16 9 C 0.08 1.87 5.13 -17.33 -0.09 1.78 16 10 N -0.78 -19.40 10.97 55.55 0.61 -18.79 16 11 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 16 12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 13 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 15 C -0.20 -4.95 6.36 -37.67 -0.24 -5.19 16 16 S 0.03 0.69 22.81 -107.50 -2.45 -1.76 16 17 C 0.00 0.02 7.47 28.82 0.22 0.23 16 18 O -0.46 -7.57 13.64 -18.95 -0.26 -7.83 16 19 C -0.14 -2.86 9.83 -38.63 -0.38 -3.24 16 20 C -0.04 -0.81 5.97 -105.40 -0.63 -1.44 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 25 H 0.05 0.85 7.47 -51.93 -0.39 0.46 16 26 H 0.09 1.88 8.04 -52.49 -0.42 1.46 16 27 H 0.12 3.17 6.17 -52.48 -0.32 2.85 16 28 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 29 H 0.38 4.13 9.06 45.56 0.41 4.55 16 30 H 0.13 2.29 7.66 -52.48 -0.40 1.89 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -27.86 273.57 -8.46 -36.32 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -2.35 Total: 5.80 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -3.11 Total: -30.97 kcal Atomic # 7 Polarization: -19.40 SS G_CDS: 0.61 Total: -18.79 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.26 Total: -7.83 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.45 Total: -1.76 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.86 -8.46 -36.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.219 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds