Wall clock time and date at job start Mon Mar 30 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47397 * 2 1 4 4 C 1.37846 * 119.55224 * 265.00314 * 3 2 1 5 5 C 1.37836 * 120.74236 * 180.02562 * 4 3 2 6 6 C 1.40475 * 119.88272 * 359.97438 * 5 4 3 7 7 C 1.40963 * 120.10426 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99946 * 204.96103 * 7 6 5 9 9 C 1.39906 * 119.99853 * 25.24654 * 7 6 5 10 10 N 1.30887 * 120.00064 * 17.48331 * 9 7 6 11 11 Si 1.86799 * 120.00038 * 197.48621 * 9 7 6 12 12 H 1.48497 * 109.46849 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46828 * 119.99558 * 11 9 7 14 14 H 1.48494 * 109.47338 * 239.99482 * 11 9 7 15 15 C 1.42062 * 119.79243 * 0.27636 * 6 5 4 16 16 S 1.75894 * 130.46083 * 180.32530 * 15 6 5 17 17 C 1.75289 * 92.22212 * 179.53227 * 16 15 6 18 18 O 1.35748 * 124.36174 * 179.76927 * 17 16 15 19 19 C 1.32526 * 111.27513 * 359.79550 * 17 16 15 20 20 C 1.39441 * 119.67871 * 359.42785 * 15 6 5 21 21 H 1.09001 * 109.47511 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46694 * 300.00348 * 1 2 3 23 23 H 1.08996 * 109.47213 * 59.99453 * 1 2 3 24 24 H 1.09006 * 109.46694 * 239.99652 * 2 1 3 25 25 H 1.09003 * 109.46868 * 120.00708 * 2 1 3 26 26 H 1.07999 * 119.62551 * 359.97124 * 4 3 2 27 27 H 1.08003 * 120.05988 * 179.97438 * 5 4 3 28 28 H 0.96994 * 119.99920 * 180.02562 * 10 9 7 29 29 H 0.96701 * 114.00178 * 270.02679 * 18 17 16 30 30 H 1.08004 * 122.62113 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3576 2.0269 -1.1946 5 6 2.8198 3.3251 -1.2230 6 6 2.9627 4.0436 -0.0244 7 6 3.4346 5.3717 -0.0482 8 1 3.9211 5.7875 0.8217 9 6 3.2671 6.1531 -1.1965 10 7 2.3959 5.7999 -2.1072 11 14 4.2871 7.7005 -1.4302 12 1 5.1917 7.8775 -0.2660 13 1 5.0942 7.5787 -2.6709 14 1 3.3859 8.8756 -1.5395 15 6 2.6353 3.4258 1.2122 16 16 2.6986 4.0538 2.8540 17 6 2.1033 2.5481 3.5257 18 8 1.9024 2.3263 4.8498 19 6 1.8751 1.6541 2.5744 20 6 2.1630 2.1139 1.2248 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 2.2497 1.4781 -2.1185 27 1 3.0717 3.7892 -2.1652 28 1 2.2801 6.3414 -2.9035 29 1 2.6739 1.9686 5.3101 30 1 1.5040 0.6619 2.7848 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:25 Heat of formation + Delta-G solvation = -39.247392 kcal Electronic energy + Delta-G solvation = -15365.586772 eV Core-core repulsion = 12829.687461 eV Total energy + Delta-G solvation = -2535.899311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17125 -38.84592 -36.32484 -34.81142 -33.83515 -30.87645 -28.92731 -27.19258 -24.22061 -23.89079 -21.95825 -21.58385 -19.53868 -18.80009 -17.36749 -16.95235 -16.42080 -16.32402 -15.67815 -15.02417 -14.75296 -14.30908 -14.27371 -13.72337 -13.61722 -13.21515 -13.16656 -12.81186 -12.68981 -12.56095 -12.00846 -11.84465 -11.48452 -11.43288 -11.37027 -10.97426 -10.94047 -9.95646 -9.00727 -8.74618 -8.48933 -6.33656 0.09965 0.71364 0.84203 1.33933 1.37050 1.44599 1.50631 1.68682 2.17111 2.67205 3.26696 3.55362 4.24534 4.33337 4.39955 4.57227 4.71217 4.75141 4.91720 4.94968 5.02946 5.13339 5.14868 5.25601 5.44810 5.48949 5.55211 5.79337 5.92362 6.16148 6.22880 6.57330 6.61135 6.79837 6.88302 8.24791 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.008879 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.121086 B = 3152.903190 C = 4305.997420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.089 4.089 5 C -0.191 4.191 6 C 0.114 3.886 7 C -0.488 4.488 8 H 0.071 0.929 9 C 0.039 3.961 10 N -0.813 5.813 11 Si 0.979 3.021 12 H -0.261 1.261 13 H -0.258 1.258 14 H -0.265 1.265 15 C -0.233 4.233 16 S 0.013 5.987 17 C 0.023 3.977 18 O -0.459 6.459 19 C -0.148 4.148 20 C -0.050 4.050 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.292 0.708 29 H 0.410 0.590 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -6.571 4.474 7.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.214 4.214 6 C 0.108 3.892 7 C -0.517 4.517 8 H 0.089 0.911 9 C -0.177 4.177 10 N -0.438 5.438 11 Si 0.800 3.200 12 H -0.184 1.184 13 H -0.183 1.183 14 H -0.189 1.189 15 C -0.348 4.348 16 S 0.273 5.727 17 C -0.136 4.136 18 O -0.271 6.271 19 C -0.181 4.181 20 C -0.056 4.056 21 H 0.093 0.907 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.269 0.731 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.320 -4.937 4.878 6.948 hybrid contribution 0.372 -0.418 -0.743 0.930 sum 0.692 -5.355 4.135 6.801 Atomic orbital electron populations 1.21722 0.95301 1.01674 1.00946 1.20238 0.95693 0.91454 1.02164 1.19442 1.10432 0.97596 0.90262 1.20692 0.98593 0.94637 0.96868 1.21136 1.08412 0.94316 0.97543 1.17291 0.89571 0.93074 0.89252 1.19683 1.34732 0.97048 1.00259 0.91061 1.26707 0.94284 1.02675 0.94069 1.69885 1.26241 1.38884 1.08812 0.85194 0.78756 0.76517 0.79560 1.18435 1.18273 1.18923 1.22693 1.16749 0.99073 0.96328 1.83693 1.71815 1.17568 0.99652 1.22008 1.07913 0.96239 0.87473 1.84760 1.41876 1.85171 1.15275 1.21482 1.04990 1.01118 0.90538 1.18807 1.00817 0.92644 0.93345 0.90664 0.94146 0.93941 0.91011 0.91337 0.86374 0.87233 0.89755 0.73136 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.90 71.98 0.71 -3.29 16 2 C -0.06 -1.83 5.82 29.85 0.17 -1.65 16 3 C -0.17 -7.27 5.21 -19.20 -0.10 -7.37 16 4 C -0.09 -4.00 9.58 22.08 0.21 -3.78 16 5 C -0.19 -9.94 8.67 22.72 0.20 -9.75 16 6 C 0.11 6.19 5.59 -21.12 -0.12 6.07 16 7 C -0.49 -26.51 8.82 23.34 0.21 -26.30 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.04 1.96 5.13 85.24 0.44 2.40 16 10 N -0.81 -41.89 10.97 21.82 0.24 -41.65 16 11 Si 0.98 38.12 29.60 68.60 2.03 40.15 16 12 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 14 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 15 C -0.23 -11.74 6.36 23.51 0.15 -11.59 16 16 S 0.01 0.56 22.81 -56.49 -1.29 -0.73 16 17 C 0.02 0.86 7.47 66.68 0.50 1.35 16 18 O -0.46 -13.35 13.64 -90.73 -1.24 -14.59 16 19 C -0.15 -5.56 9.83 22.98 0.23 -5.33 16 20 C -0.05 -2.22 5.97 -20.37 -0.12 -2.34 16 21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 2.03 8.03 -2.38 -0.02 2.01 16 25 H 0.07 1.95 7.47 -2.39 -0.02 1.93 16 26 H 0.12 4.61 8.04 -2.91 -0.02 4.59 16 27 H 0.11 5.89 6.17 -2.91 -0.02 5.87 16 28 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 29 H 0.41 7.21 9.06 -74.06 -0.67 6.54 16 30 H 0.16 4.99 7.66 -2.91 -0.02 4.96 16 Total: -1.00 -61.93 273.57 2.71 -59.21 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.50 Total: 19.18 kcal Atomic # 6 Polarization: -64.06 SS G_CDS: 2.47 Total: -61.59 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.24 Total: -41.65 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.24 Total: -14.59 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.29 Total: -0.73 kcal Total: -61.93 2.71 -59.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.966 kcal (2) G-P(sol) polarization free energy of solvation -61.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds