Wall clock time and date at job start Mon Mar 30 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47260 * 2 1 4 4 C 1.39452 * 119.87866 * 269.98087 * 3 2 1 5 5 S 1.75998 * 130.21112 * 359.97438 * 4 3 2 6 6 C 1.75449 * 91.78005 * 179.97438 * 5 4 3 7 7 C 1.39873 * 124.82713 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00514 * 179.97438 * 7 6 5 9 9 C 1.40119 * 120.00013 * 359.97438 * 7 6 5 10 10 N 1.30809 * 119.99741 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47041 * 120.00460 * 11 9 7 14 14 H 1.48499 * 109.46999 * 239.99990 * 11 9 7 15 15 C 1.36988 * 110.34793 * 359.74716 * 6 5 4 16 16 C 1.39709 * 115.04485 * 0.45344 * 15 6 5 17 17 C 1.42035 * 128.45169 * 179.81279 * 16 15 6 18 18 C 1.35754 * 120.55948 * 179.72272 * 17 16 15 19 19 C 1.38276 * 119.87556 * 90.00045 * 3 2 1 20 20 O 1.35788 * 119.94726 * 359.97438 * 19 3 2 21 21 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47239 * 299.99562 * 1 2 3 23 23 H 1.08996 * 109.47300 * 60.00011 * 1 2 3 24 24 H 1.08998 * 109.46663 * 240.00059 * 2 1 3 25 25 H 1.09003 * 109.47014 * 120.00250 * 2 1 3 26 26 H 0.97005 * 119.99710 * 180.02562 * 10 9 7 27 27 H 1.07996 * 122.47651 * 180.29604 * 15 6 5 28 28 H 1.08003 * 119.71542 * 359.70155 * 17 16 15 29 29 H 1.08002 * 119.71191 * 180.02562 * 18 17 16 30 30 H 0.96695 * 114.00615 * 270.01785 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0756 -1.2092 5 16 2.0656 1.5102 -2.8639 6 6 2.6081 3.0475 -3.5124 7 6 2.7138 3.3473 -4.8745 8 1 3.0573 4.3221 -5.1879 9 6 2.3741 2.3829 -5.8326 10 7 1.9576 1.2024 -5.4531 11 14 2.5147 2.7835 -7.6517 12 1 3.0053 4.1755 -7.8155 13 1 3.4691 1.8440 -8.2931 14 1 1.1818 2.6492 -8.2925 15 6 2.9074 3.9146 -2.4950 16 6 2.7313 3.3999 -1.2082 17 6 2.9572 4.0419 0.0385 18 6 2.7259 3.3863 1.2045 19 6 2.2620 2.0702 1.1990 20 8 2.0339 1.4268 2.3729 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7227 0.5347 -6.1163 27 1 3.2563 4.9208 -2.6744 28 1 3.3164 5.0603 0.0589 29 1 2.9019 3.8878 2.1446 30 1 1.1351 1.5350 2.7126 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:44 Heat of formation + Delta-G solvation = -41.944355 kcal Electronic energy + Delta-G solvation = -15335.527144 eV Core-core repulsion = 12799.510884 eV Total energy + Delta-G solvation = -2536.016260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.92257 -36.40294 -34.79257 -33.52071 -32.34542 -28.84155 -28.25103 -25.08171 -23.28082 -22.15589 -20.49339 -19.09172 -17.85284 -17.46847 -15.73081 -15.29108 -14.87907 -14.25741 -14.04328 -13.38714 -13.18345 -12.88533 -12.49351 -12.16194 -12.00944 -11.83264 -11.48866 -11.33777 -11.20007 -10.75875 -10.59796 -10.41857 -10.27382 -10.17971 -9.54480 -9.27359 -8.98377 -8.31298 -7.29484 -7.21324 -6.38888 -4.70056 1.94457 2.37862 2.75202 2.82567 2.90139 3.24278 3.46909 3.55572 3.82941 4.50870 4.97119 5.17959 5.44963 5.58340 5.84841 5.89310 6.06538 6.23144 6.34731 6.39178 6.63042 6.65134 6.70670 6.79976 7.02054 7.13391 7.30371 7.45800 7.49122 7.69370 7.81159 7.93697 8.25771 8.37280 8.51622 9.61303 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.036792 B = 0.007043 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.848055 B = 3974.498213 C = 4642.605735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.034 4.034 4 C -0.255 4.255 5 S 0.147 5.853 6 C 0.052 3.948 7 C -0.382 4.382 8 H 0.099 0.901 9 C 0.052 3.948 10 N -0.776 5.776 11 Si 0.938 3.062 12 H -0.255 1.255 13 H -0.267 1.267 14 H -0.267 1.267 15 C -0.363 4.363 16 C 0.016 3.984 17 C -0.145 4.145 18 C -0.123 4.123 19 C 0.009 3.991 20 O -0.497 6.497 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.301 0.699 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -1.301 2.621 3.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.039 4.039 4 C -0.370 4.370 5 S 0.408 5.592 6 C -0.067 4.067 7 C -0.416 4.416 8 H 0.117 0.883 9 C -0.169 4.169 10 N -0.402 5.402 11 Si 0.761 3.239 12 H -0.179 1.179 13 H -0.192 1.192 14 H -0.192 1.192 15 C -0.388 4.388 16 C 0.008 3.992 17 C -0.165 4.165 18 C -0.144 4.144 19 C -0.037 4.037 20 O -0.304 6.304 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.535 -3.010 1.795 4.325 hybrid contribution 0.092 1.758 0.006 1.761 sum -2.443 -1.252 1.801 3.284 Atomic orbital electron populations 1.21642 0.95379 1.00818 1.01855 1.20396 0.95697 0.93667 1.02171 1.19219 0.98763 0.95089 0.90784 1.23422 1.13848 0.99194 1.00525 1.84757 1.70309 1.14944 0.89212 1.21496 0.94254 0.94573 0.96421 1.19359 1.33164 1.00111 0.88947 0.88280 1.26327 0.92607 0.93948 1.04030 1.68652 1.29247 1.04302 1.37998 0.85711 0.79239 0.80335 0.78596 1.17875 1.19204 1.19205 1.19593 1.27805 1.01576 0.89808 1.18059 0.95570 0.92230 0.93380 1.20392 1.05980 0.99049 0.91120 1.20467 1.02585 0.93910 0.97415 1.17684 1.10249 0.91957 0.83791 1.84809 1.34237 1.74266 1.37121 0.93034 0.93373 0.92285 0.91472 0.91207 0.88579 0.87599 0.87760 0.87579 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 37.16 0.37 -1.85 16 2 C -0.08 -1.50 5.69 -27.88 -0.16 -1.66 16 3 C -0.03 -0.73 5.17 -104.16 -0.54 -1.27 16 4 C -0.26 -6.16 6.30 -38.31 -0.24 -6.40 16 5 S 0.15 3.60 19.39 -107.50 -2.08 1.52 16 6 C 0.05 1.35 6.11 -39.42 -0.24 1.11 16 7 C -0.38 -9.37 9.26 -38.26 -0.35 -9.73 16 8 H 0.10 2.30 7.85 -52.49 -0.41 1.89 16 9 C 0.05 1.18 5.50 -17.28 -0.10 1.08 16 10 N -0.78 -17.89 10.58 55.56 0.59 -17.30 16 11 Si 0.94 16.71 29.56 -169.99 -5.03 11.68 16 12 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 13 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 14 H -0.27 -4.67 7.11 56.52 0.40 -4.26 16 15 C -0.36 -9.26 10.14 -39.49 -0.40 -9.66 16 16 C 0.02 0.39 5.86 -107.07 -0.63 -0.24 16 17 C -0.15 -3.18 10.03 -39.02 -0.39 -3.57 16 18 C -0.12 -2.50 9.89 -39.98 -0.40 -2.89 16 19 C 0.01 0.19 6.68 -39.08 -0.26 -0.07 16 20 O -0.50 -8.76 12.50 -19.08 -0.24 -9.00 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.27 7.57 -51.93 -0.39 0.88 16 25 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 26 H 0.30 6.17 8.30 -40.82 -0.34 5.83 16 27 H 0.11 2.58 8.06 -52.49 -0.42 2.15 16 28 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.36 4.74 9.06 45.56 0.41 5.15 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -27.42 272.76 -8.44 -35.85 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -2.45 Total: 8.30 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: -3.34 Total: -35.16 kcal Atomic # 7 Polarization: -17.89 SS G_CDS: 0.59 Total: -17.30 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.24 Total: -9.00 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.08 Total: 1.52 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.42 -8.44 -35.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.090 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds