Wall clock time and date at job start Mon Mar 30 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47260 * 2 1 4 4 C 1.39452 * 119.87866 * 269.98087 * 3 2 1 5 5 S 1.75998 * 130.21112 * 359.97438 * 4 3 2 6 6 C 1.75449 * 91.78005 * 179.97438 * 5 4 3 7 7 C 1.39873 * 124.82713 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00514 * 179.97438 * 7 6 5 9 9 C 1.40119 * 120.00013 * 359.97438 * 7 6 5 10 10 N 1.30809 * 119.99741 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47041 * 120.00460 * 11 9 7 14 14 H 1.48499 * 109.46999 * 239.99990 * 11 9 7 15 15 C 1.36988 * 110.34793 * 359.74716 * 6 5 4 16 16 C 1.39709 * 115.04485 * 0.45344 * 15 6 5 17 17 C 1.42035 * 128.45169 * 179.81279 * 16 15 6 18 18 C 1.35754 * 120.55948 * 179.72272 * 17 16 15 19 19 C 1.38276 * 119.87556 * 90.00045 * 3 2 1 20 20 O 1.35788 * 119.94726 * 359.97438 * 19 3 2 21 21 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47239 * 299.99562 * 1 2 3 23 23 H 1.08996 * 109.47300 * 60.00011 * 1 2 3 24 24 H 1.08998 * 109.46663 * 240.00059 * 2 1 3 25 25 H 1.09003 * 109.47014 * 120.00250 * 2 1 3 26 26 H 0.97005 * 119.99710 * 180.02562 * 10 9 7 27 27 H 1.07996 * 122.47651 * 180.29604 * 15 6 5 28 28 H 1.08003 * 119.71542 * 359.70155 * 17 16 15 29 29 H 1.08002 * 119.71191 * 180.02562 * 18 17 16 30 30 H 0.96695 * 114.00615 * 270.01785 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0756 -1.2092 5 16 2.0656 1.5102 -2.8639 6 6 2.6081 3.0475 -3.5124 7 6 2.7138 3.3473 -4.8745 8 1 3.0573 4.3221 -5.1879 9 6 2.3741 2.3829 -5.8326 10 7 1.9576 1.2024 -5.4531 11 14 2.5147 2.7835 -7.6517 12 1 3.0053 4.1755 -7.8155 13 1 3.4691 1.8440 -8.2931 14 1 1.1818 2.6492 -8.2925 15 6 2.9074 3.9146 -2.4950 16 6 2.7313 3.3999 -1.2082 17 6 2.9572 4.0419 0.0385 18 6 2.7259 3.3863 1.2045 19 6 2.2620 2.0702 1.1990 20 8 2.0339 1.4268 2.3729 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7227 0.5347 -6.1163 27 1 3.2563 4.9208 -2.6744 28 1 3.3164 5.0603 0.0589 29 1 2.9019 3.8878 2.1446 30 1 1.1351 1.5350 2.7126 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:44 Heat of formation + Delta-G solvation = -57.316999 kcal Electronic energy + Delta-G solvation = -15336.193752 eV Core-core repulsion = 12799.510884 eV Total energy + Delta-G solvation = -2536.682868 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55764 -38.03945 -36.49885 -35.05162 -34.03633 -30.55154 -29.86330 -26.84173 -24.81367 -23.84212 -22.14110 -20.83151 -19.62762 -19.04248 -17.41838 -16.92017 -16.47238 -15.83950 -15.68859 -14.89338 -14.68420 -14.44044 -14.19555 -13.83726 -13.62361 -13.36685 -13.06349 -12.93521 -12.72148 -12.26701 -12.18003 -11.95121 -11.85907 -11.74014 -11.25451 -10.96772 -10.73866 -10.05450 -9.07463 -8.92194 -8.22200 -6.54945 0.23145 0.66484 1.27007 1.34938 1.41831 1.54787 1.79986 1.90684 2.13537 2.78596 3.19266 3.65072 3.95701 4.14275 4.31312 4.51074 4.61153 4.75259 4.77382 4.89861 5.01845 5.10186 5.16607 5.28003 5.36356 5.45616 5.49938 5.73052 5.79241 5.92770 6.05060 6.20123 6.44636 6.54864 7.10494 7.94258 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.036792 B = 0.007043 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.848055 B = 3974.498213 C = 4642.605735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C -0.050 4.050 4 C -0.274 4.274 5 S 0.136 5.864 6 C 0.021 3.979 7 C -0.412 4.412 8 H 0.101 0.899 9 C 0.017 3.983 10 N -0.798 5.798 11 Si 1.013 2.987 12 H -0.254 1.254 13 H -0.258 1.258 14 H -0.257 1.257 15 C -0.393 4.393 16 C -0.014 4.014 17 C -0.155 4.155 18 C -0.121 4.121 19 C 0.024 3.976 20 O -0.495 6.495 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.313 0.687 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 -1.879 3.437 5.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.055 4.055 4 C -0.388 4.388 5 S 0.396 5.604 6 C -0.098 4.098 7 C -0.446 4.446 8 H 0.119 0.881 9 C -0.202 4.202 10 N -0.424 5.424 11 Si 0.831 3.169 12 H -0.177 1.177 13 H -0.182 1.182 14 H -0.181 1.181 15 C -0.418 4.418 16 C -0.022 4.022 17 C -0.175 4.175 18 C -0.141 4.141 19 C -0.023 4.023 20 O -0.305 6.305 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.139 0.861 29 H 0.158 0.842 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.070 -3.593 2.653 5.420 hybrid contribution 0.232 1.886 -0.034 1.900 sum -2.839 -1.707 2.619 4.223 Atomic orbital electron populations 1.21608 0.93421 1.02509 1.01571 1.20424 0.97334 0.91675 1.02182 1.19617 0.98845 0.96699 0.90366 1.23629 1.14713 0.99452 1.01048 1.84473 1.70946 1.14811 0.90206 1.21859 0.95204 0.95367 0.97384 1.19677 1.34523 1.01093 0.89264 0.88117 1.27292 0.91345 0.93255 1.08302 1.68676 1.28731 1.05096 1.39942 0.84645 0.79682 0.80152 0.72399 1.17722 1.18212 1.18110 1.19724 1.29643 1.01689 0.90713 1.18359 0.96716 0.93046 0.94090 1.20646 1.06073 1.00047 0.90701 1.20836 1.01152 0.93949 0.98159 1.17797 1.08318 0.91807 0.84344 1.84729 1.36498 1.73765 1.35520 0.90381 0.91714 0.94476 0.92822 0.89715 0.87358 0.88017 0.86104 0.84180 0.75332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 9.89 71.98 0.71 -3.27 16 2 C -0.08 -2.78 5.69 29.85 0.17 -2.61 16 3 C -0.05 -2.13 5.17 -19.56 -0.10 -2.23 16 4 C -0.27 -13.47 6.30 23.09 0.15 -13.32 16 5 S 0.14 6.89 19.39 -56.49 -1.10 5.79 16 6 C 0.02 1.15 6.11 22.37 0.14 1.28 16 7 C -0.41 -20.98 9.26 23.12 0.21 -20.77 16 8 H 0.10 4.88 7.85 -2.91 -0.02 4.86 16 9 C 0.02 0.77 5.50 85.30 0.47 1.24 16 10 N -0.80 -37.27 10.58 21.86 0.23 -37.04 16 11 Si 1.01 33.76 29.56 68.60 2.03 35.79 16 12 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 13 H -0.26 -8.17 7.11 99.48 0.71 -7.46 16 14 H -0.26 -8.10 7.11 99.48 0.71 -7.39 16 15 C -0.39 -21.04 10.14 22.33 0.23 -20.82 16 16 C -0.01 -0.73 5.86 -21.45 -0.13 -0.85 16 17 C -0.15 -6.69 10.03 22.64 0.23 -6.47 16 18 C -0.12 -4.60 9.89 22.01 0.22 -4.38 16 19 C 0.02 0.91 6.68 22.60 0.15 1.07 16 20 O -0.49 -15.43 12.50 -91.18 -1.14 -16.57 16 21 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 24 H 0.05 2.02 7.57 -2.39 -0.02 2.00 16 25 H 0.08 2.71 7.51 -2.39 -0.02 2.69 16 26 H 0.31 12.77 8.30 -92.70 -0.77 12.00 16 27 H 0.10 5.27 8.06 -2.91 -0.02 5.24 16 28 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 29 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 30 H 0.39 8.33 9.06 -74.06 -0.67 7.66 16 Total: -1.00 -60.38 272.76 2.96 -57.42 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.49 Total: 25.75 kcal Atomic # 6 Polarization: -73.58 SS G_CDS: 2.44 Total: -71.13 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.23 Total: -37.04 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.14 Total: -16.57 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.10 Total: 5.79 kcal Total: -60.38 2.96 -57.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.108 kcal (2) G-P(sol) polarization free energy of solvation -60.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds