Wall clock time and date at job start Mon Mar 30 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.46890 * 2 1 4 4 C 1.32722 * 124.65750 * 89.99987 * 3 2 1 5 5 C 1.40006 * 115.81723 * 179.97438 * 4 3 2 6 6 C 1.39799 * 112.67145 * 0.02562 * 5 4 3 7 7 C 1.39533 * 120.11632 * 179.97438 * 6 5 4 8 8 C 1.38687 * 121.39922 * 0.02562 * 7 6 5 9 9 O 1.35908 * 119.51867 * 180.02562 * 8 7 6 10 10 C 1.38058 * 120.96647 * 359.97438 * 8 7 6 11 11 C 1.40250 * 120.09372 * 0.02562 * 10 8 7 12 12 C 1.40578 * 120.36276 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99754 * 154.21261 * 12 11 10 14 14 C 1.39961 * 120.00181 * 334.20633 * 12 11 10 15 15 N 1.30850 * 119.99555 * 343.33898 * 14 12 11 16 16 Si 1.86797 * 120.00017 * 163.33552 * 14 12 11 17 17 H 1.48495 * 109.47269 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47122 * 120.00289 * 16 14 12 19 19 H 1.48504 * 109.46888 * 240.00094 * 16 14 12 20 20 S 1.75501 * 124.66133 * 269.69862 * 3 2 1 21 21 H 1.08997 * 109.46703 * 60.00100 * 1 2 3 22 22 H 1.09006 * 109.46797 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46753 * 299.99736 * 1 2 3 24 24 H 1.08997 * 109.46753 * 240.00264 * 2 1 3 25 25 H 1.09004 * 109.47063 * 120.00005 * 2 1 3 26 26 H 1.08003 * 122.09444 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.30029 * 180.02562 * 7 6 5 28 28 H 0.96704 * 114.00038 * 89.99708 * 9 8 7 29 29 H 1.07995 * 119.95348 * 180.02562 * 10 8 7 30 30 H 0.97006 * 119.99885 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2839 2.1324 1.0917 5 6 2.7455 3.4366 0.8766 6 6 2.8568 3.7517 -0.4809 7 6 3.3032 5.0145 -0.8722 8 6 3.6456 5.9811 0.0615 9 8 4.0754 7.1988 -0.3622 10 6 3.5551 5.7250 1.4151 11 6 3.1125 4.4728 1.8658 12 6 3.0178 4.2060 3.2427 13 1 2.3230 3.4613 3.6019 14 6 3.8239 4.9054 4.1482 15 7 4.8760 5.5554 3.7206 16 14 3.3979 4.9109 5.9669 17 1 2.1699 4.1064 6.1901 18 1 4.5213 4.3234 6.7403 19 1 3.1643 6.3069 6.4163 20 16 2.3722 2.3593 -1.4435 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.1422 1.7304 2.0841 27 1 3.3838 5.2440 -1.9245 28 1 3.3668 7.8455 -0.4842 29 1 3.8256 6.4898 2.1279 30 1 5.4346 6.0404 4.3481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:03 Heat of formation + Delta-G solvation = -42.521343 kcal Electronic energy + Delta-G solvation = -15232.540445 eV Core-core repulsion = 12696.499165 eV Total energy + Delta-G solvation = -2536.041280 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20623 -38.34412 -36.57637 -35.32118 -32.83170 -31.68626 -28.79880 -27.15358 -24.77001 -23.77658 -22.14346 -20.86457 -19.85881 -18.34650 -17.63736 -16.85869 -16.34686 -16.28545 -15.71496 -14.88255 -14.82303 -14.57483 -14.29343 -13.84964 -13.47157 -13.32595 -12.98774 -12.89995 -12.47535 -12.42182 -12.24219 -12.00329 -11.79496 -11.51023 -11.30563 -11.05696 -10.99118 -10.08762 -8.96381 -8.77683 -8.51031 -6.43507 0.08709 0.78729 0.89424 1.31115 1.36976 1.46193 1.54015 1.71882 2.12744 2.51919 3.37839 3.69843 3.97996 4.29696 4.38765 4.53739 4.60107 4.76831 4.92991 5.00043 5.03306 5.05798 5.12733 5.21545 5.35999 5.41232 5.52795 5.85627 5.87769 5.90923 6.01825 6.37418 6.66035 6.71208 7.11619 8.10538 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.008788 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.776760 B = 3185.497887 C = 4514.375057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.214 4.214 4 C -0.089 4.089 5 C -0.209 4.209 6 C -0.089 4.089 7 C -0.270 4.270 8 C 0.152 3.848 9 O -0.514 6.514 10 C -0.246 4.246 11 C 0.132 3.868 12 C -0.452 4.452 13 H 0.092 0.908 14 C 0.033 3.967 15 N -0.798 5.798 16 Si 0.992 3.008 17 H -0.251 1.251 18 H -0.263 1.263 19 H -0.261 1.261 20 S 0.046 5.954 21 H 0.049 0.951 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.399 0.601 29 H 0.114 0.886 30 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -5.041 -1.328 7.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.329 4.329 4 C -0.118 4.118 5 C -0.216 4.216 6 C -0.204 4.204 7 C -0.296 4.296 8 C 0.106 3.894 9 O -0.326 6.326 10 C -0.268 4.268 11 C 0.127 3.873 12 C -0.479 4.479 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.421 5.421 16 Si 0.811 3.189 17 H -0.174 1.174 18 H -0.187 1.187 19 H -0.185 1.185 20 S 0.308 5.692 21 H 0.068 0.932 22 H 0.100 0.900 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.148 0.852 27 H 0.128 0.872 28 H 0.256 0.744 29 H 0.131 0.869 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.248 -5.547 -2.766 8.122 hybrid contribution -0.005 1.111 1.982 2.272 sum -5.253 -4.436 -0.785 6.920 Atomic orbital electron populations 1.21752 0.93829 1.02597 1.01695 1.20074 0.96589 0.87974 1.03394 1.24018 1.12979 1.01932 0.93969 1.19656 1.00252 0.92771 0.99132 1.19507 1.14177 0.95670 0.92199 1.22359 1.03915 0.97925 0.96229 1.19821 1.17744 0.94029 0.98042 1.18090 0.94853 0.85249 0.91222 1.84687 1.37733 1.21134 1.89035 1.21168 1.13406 0.98549 0.93695 1.18641 0.87210 0.88903 0.92556 1.19896 1.18231 1.18551 0.91178 0.89035 1.27045 0.92561 0.91943 1.07104 1.69912 1.10156 1.21834 1.40195 0.85004 0.79949 0.79748 0.74227 1.17379 1.18719 1.18514 1.83165 1.71703 1.04624 1.09681 0.93180 0.90002 0.93346 0.90250 0.89652 0.85197 0.87223 0.74394 0.86858 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.90 71.98 0.71 -2.60 16 2 C -0.04 -1.11 6.39 29.85 0.19 -0.92 16 3 C -0.21 -7.96 5.69 24.51 0.14 -7.82 16 4 C -0.09 -3.88 9.60 21.53 0.21 -3.67 16 5 C -0.21 -10.54 6.02 -19.92 -0.12 -10.66 16 6 C -0.09 -4.28 6.48 22.96 0.15 -4.13 16 7 C -0.27 -13.01 9.94 22.69 0.23 -12.78 16 8 C 0.15 7.52 6.66 22.33 0.15 7.67 16 9 O -0.51 -21.84 13.47 -92.52 -1.25 -23.08 16 10 C -0.25 -13.18 8.57 22.72 0.19 -12.99 16 11 C 0.13 7.12 5.75 -19.66 -0.11 7.01 16 12 C -0.45 -23.07 8.81 23.26 0.20 -22.87 16 13 H 0.09 4.41 7.53 -2.91 -0.02 4.39 16 14 C 0.03 1.54 5.15 85.26 0.44 1.98 16 15 N -0.80 -40.16 10.97 21.83 0.24 -39.92 16 16 Si 0.99 35.21 29.59 68.60 2.03 37.24 16 17 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 18 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 20 S 0.05 1.80 23.27 -56.49 -1.31 0.49 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.13 5.33 7.73 -2.91 -0.02 5.31 16 27 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.40 12.23 9.06 -74.05 -0.67 11.56 16 29 H 0.11 6.26 6.19 -2.91 -0.02 6.24 16 30 H 0.30 13.29 8.30 -92.70 -0.77 12.52 16 Total: -1.00 -61.31 275.16 2.58 -58.73 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.50 Total: 28.33 kcal Atomic # 6 Polarization: -64.16 SS G_CDS: 2.38 Total: -61.78 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.24 Total: -39.92 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.25 Total: -23.08 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.31 Total: 0.49 kcal Total: -61.31 2.58 -58.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.207 kcal (2) G-P(sol) polarization free energy of solvation -61.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds