Wall clock time and date at job start Mon Mar 30 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47261 * 2 1 4 4 C 1.35784 * 119.95082 * 264.72279 * 3 2 1 5 5 C 1.40325 * 120.85226 * 179.76775 * 4 3 2 6 6 S 1.75997 * 130.19390 * 180.20885 * 5 4 3 7 7 C 1.75249 * 92.30202 * 180.27694 * 6 5 4 8 8 O 1.35711 * 124.27208 * 180.02562 * 7 6 5 9 9 C 1.32399 * 111.45801 * 359.97438 * 7 6 5 10 10 C 1.40234 * 120.15150 * 0.50412 * 5 4 3 11 11 C 1.40479 * 119.04893 * 359.76237 * 10 5 4 12 12 C 1.39979 * 119.98363 * 359.97438 * 11 10 5 13 13 C 1.41258 * 120.06900 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99722 * 154.23670 * 13 12 11 15 15 C 1.39860 * 120.00339 * 334.23304 * 13 12 11 16 16 N 1.30899 * 119.99566 * 342.98391 * 15 13 12 17 17 Si 1.86798 * 120.00122 * 162.97774 * 15 13 12 18 18 H 1.48501 * 109.47177 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47059 * 120.00548 * 17 15 13 20 20 H 1.48507 * 109.47084 * 240.00584 * 17 15 13 21 21 H 1.09000 * 109.47433 * 299.99946 * 1 2 3 22 22 H 1.08998 * 109.47209 * 60.00017 * 1 2 3 23 23 H 1.08994 * 109.47110 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47433 * 240.00053 * 2 1 3 25 25 H 1.08998 * 109.47209 * 119.99983 * 2 1 3 26 26 H 1.08003 * 119.57304 * 0.02562 * 4 3 2 27 27 H 0.96699 * 113.99790 * 359.97438 * 8 7 6 28 28 H 1.08000 * 122.61739 * 180.02562 * 9 7 6 29 29 H 1.08001 * 120.01045 * 180.02562 * 11 10 5 30 30 H 0.97006 * 119.99615 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3604 2.0239 -1.1715 5 6 2.8254 3.3477 -1.1940 6 16 3.3094 4.3587 -2.5508 7 6 3.6896 5.7090 -1.5004 8 8 4.1538 6.9080 -1.9347 9 6 3.4658 5.4121 -0.2297 10 6 2.9677 4.0646 0.0028 11 6 2.6339 3.4400 1.2160 12 6 2.1663 2.1206 1.2180 13 6 1.8296 1.4909 2.4369 14 1 1.1103 0.6854 2.4478 15 6 2.4277 1.9105 3.6294 16 7 3.5185 2.6334 3.5955 17 14 1.6700 1.4395 5.2706 18 1 0.4502 0.6253 5.0371 19 1 2.6490 0.6489 6.0591 20 1 1.3086 2.6695 6.0202 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2581 1.4791 -2.0984 27 1 4.2626 6.9635 -2.8939 28 1 3.6395 6.1149 0.5717 29 1 2.7371 3.9778 2.1468 30 1 3.9331 2.9248 4.4227 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315101.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:49 Heat of formation + Delta-G solvation = -37.729495 kcal Electronic energy + Delta-G solvation = -15327.397815 eV Core-core repulsion = 12791.564325 eV Total energy + Delta-G solvation = -2535.833490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16325 -39.13491 -36.34847 -35.36931 -32.71510 -31.40841 -28.95849 -27.24328 -24.40069 -23.60150 -22.36844 -21.00501 -20.08100 -18.89432 -17.17204 -17.02517 -16.49694 -15.72160 -15.53129 -15.27605 -15.03901 -14.42374 -14.13061 -13.95196 -13.73950 -13.28597 -13.14025 -12.80668 -12.73925 -12.48180 -12.18115 -11.88862 -11.68637 -11.26864 -11.24842 -11.17149 -10.66549 -10.08771 -8.88226 -8.60385 -8.39663 -6.27901 0.22252 0.49379 0.86399 1.11141 1.40201 1.44646 1.54996 1.69019 2.21007 2.69424 2.86697 3.64666 4.20687 4.32066 4.44867 4.65448 4.73353 4.78081 4.91666 5.00895 5.03679 5.17928 5.22907 5.35008 5.41133 5.55014 5.69364 5.82690 5.86929 6.10713 6.28668 6.40018 6.66014 6.93349 6.98759 8.33680 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.007803 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.196099 B = 3587.673667 C = 4601.755581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.160 4.160 4 C -0.063 4.063 5 C -0.257 4.257 6 S 0.044 5.956 7 C 0.058 3.942 8 O -0.445 6.445 9 C -0.210 4.210 10 C -0.043 4.043 11 C -0.183 4.183 12 C 0.093 3.907 13 C -0.474 4.474 14 H 0.092 0.908 15 C 0.032 3.968 16 N -0.823 5.823 17 Si 0.977 3.023 18 H -0.251 1.251 19 H -0.268 1.268 20 H -0.271 1.271 21 H 0.041 0.959 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.122 0.878 27 H 0.418 0.582 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 0.202 -6.938 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.163 4.163 4 C -0.085 4.085 5 C -0.371 4.371 6 S 0.298 5.702 7 C -0.102 4.102 8 O -0.252 6.252 9 C -0.241 4.241 10 C -0.049 4.049 11 C -0.205 4.205 12 C 0.089 3.911 13 C -0.503 4.503 14 H 0.110 0.890 15 C -0.183 4.183 16 N -0.449 5.449 17 Si 0.798 3.202 18 H -0.174 1.174 19 H -0.193 1.193 20 H -0.196 1.196 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.274 0.726 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.614 0.335 -7.720 7.894 hybrid contribution 0.099 0.406 1.893 1.939 sum -1.515 0.741 -5.827 6.066 Atomic orbital electron populations 1.21659 0.94734 1.01674 1.01206 1.20234 0.96241 0.91744 1.01575 1.19852 1.06756 0.97254 0.92431 1.19794 0.99503 0.91617 0.97568 1.21945 1.20358 1.00426 0.94389 1.83071 1.74263 1.04700 1.08196 1.22149 1.02614 0.89567 0.95850 1.84777 1.82147 1.27305 1.30987 1.20415 1.10935 0.97211 0.95535 1.18923 0.99957 0.92015 0.93998 1.21024 1.09528 0.95602 0.94348 1.17614 0.89609 0.90689 0.93187 1.19862 1.22174 1.17017 0.91293 0.89026 1.26804 0.93481 0.93125 1.04902 1.69950 1.15096 1.28553 1.31293 0.85218 0.79561 0.78976 0.76403 1.17443 1.19271 1.19566 0.94021 0.93075 0.90974 0.91153 0.92187 0.86044 0.72612 0.85194 0.88227 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.78 71.98 0.70 -3.71 16 2 C -0.06 -2.26 5.39 29.85 0.16 -2.10 16 3 C -0.16 -7.34 5.14 -19.73 -0.10 -7.44 16 4 C -0.06 -2.72 9.59 22.21 0.21 -2.51 16 5 C -0.26 -11.59 6.50 23.26 0.15 -11.44 16 6 S 0.04 1.53 23.16 -56.49 -1.31 0.23 16 7 C 0.06 2.15 7.49 66.71 0.50 2.65 16 8 O -0.44 -12.78 13.64 -90.32 -1.23 -14.01 16 9 C -0.21 -9.31 10.41 23.04 0.24 -9.07 16 10 C -0.04 -2.16 6.03 -20.37 -0.12 -2.28 16 11 C -0.18 -9.95 8.74 23.24 0.20 -9.75 16 12 C 0.09 4.85 5.55 -21.41 -0.12 4.73 16 13 C -0.47 -24.20 8.08 23.41 0.19 -24.01 16 14 H 0.09 4.39 6.05 -2.91 -0.02 4.37 16 15 C 0.03 1.58 5.13 85.22 0.44 2.02 16 16 N -0.82 -43.21 10.98 21.81 0.24 -42.97 16 17 Si 0.98 37.45 29.59 68.60 2.03 39.48 16 18 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 21 H 0.04 1.50 7.27 -2.39 -0.02 1.48 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.07 2.28 8.02 -2.39 -0.02 2.26 16 25 H 0.06 2.37 7.04 -2.39 -0.02 2.35 16 26 H 0.12 4.48 8.04 -2.91 -0.02 4.46 16 27 H 0.42 6.96 9.00 -74.06 -0.67 6.29 16 28 H 0.13 5.63 8.06 -2.91 -0.02 5.61 16 29 H 0.10 5.74 6.18 -2.91 -0.02 5.73 16 30 H 0.29 13.68 8.30 -92.70 -0.77 12.91 16 Total: -1.00 -61.18 270.77 2.70 -58.48 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.51 Total: 21.70 kcal Atomic # 6 Polarization: -65.36 SS G_CDS: 2.46 Total: -62.91 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.24 Total: -42.97 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.23 Total: -14.01 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.31 Total: 0.23 kcal Total: -61.18 2.70 -58.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315101.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.751 kcal (2) G-P(sol) polarization free energy of solvation -61.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds