Wall clock time and date at job start Mon Mar 30 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 109.47074 * 2 1 4 4 C 1.38616 * 119.93769 * 265.02224 * 3 2 1 5 5 C 1.37417 * 120.31177 * 179.97438 * 4 3 2 6 6 C 1.40709 * 120.42620 * 0.02562 * 5 4 3 7 7 C 1.46639 * 129.48583 * 179.97438 * 6 5 4 8 8 C 1.40809 * 123.30458 * 0.02562 * 7 6 5 9 9 H 1.08003 * 119.99753 * 337.26668 * 8 7 6 10 10 C 1.39697 * 120.00281 * 157.25856 * 8 7 6 11 11 N 1.31085 * 119.99931 * 160.53052 * 10 8 7 12 12 Si 1.86800 * 120.00150 * 340.53176 * 10 8 7 13 13 H 1.48498 * 109.46993 * 94.04228 * 12 10 8 14 14 H 1.48506 * 109.47319 * 214.04172 * 12 10 8 15 15 H 1.48503 * 109.46956 * 334.03991 * 12 10 8 16 16 C 1.36456 * 113.39783 * 179.91642 * 7 6 5 17 17 S 1.69981 * 111.92558 * 0.08962 * 16 7 6 18 18 C 1.39204 * 119.27132 * 359.97438 * 6 5 4 19 19 C 1.38104 * 119.93585 * 84.99940 * 3 2 1 20 20 O 1.35923 * 119.86578 * 359.72450 * 19 3 2 21 21 H 1.08997 * 109.47534 * 299.99937 * 1 2 3 22 22 H 1.09005 * 109.47310 * 60.00007 * 1 2 3 23 23 H 1.09001 * 109.47387 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47534 * 240.00063 * 2 1 3 25 25 H 1.08997 * 109.47017 * 119.99816 * 2 1 3 26 26 H 1.08001 * 119.84385 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.79097 * 180.02562 * 5 4 3 28 28 H 0.97003 * 120.00010 * 179.97438 * 11 10 8 29 29 H 1.08003 * 124.03823 * 180.02562 * 16 7 6 30 30 H 0.96697 * 114.00209 * 90.00125 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0383 -1.1967 5 6 2.8194 3.3338 -1.2057 6 6 2.9607 4.0481 -0.0016 7 6 3.4257 5.4212 0.2190 8 6 3.8249 6.2792 -0.8236 9 1 4.1507 5.8671 -1.7673 10 6 3.7992 7.6635 -0.6377 11 7 4.5049 8.4432 -1.4203 12 14 2.7593 8.4036 0.7263 13 1 3.5951 8.5921 1.9391 14 1 2.2249 9.7168 0.2843 15 1 1.6311 7.4901 1.0396 16 6 3.4316 5.7867 1.5337 17 16 2.8946 4.5298 2.5443 18 6 2.6305 3.4282 1.2003 19 6 2.1636 2.1054 1.1922 20 8 1.8339 1.4969 2.3620 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 2.2559 1.4990 -2.1264 27 1 3.0728 3.8069 -2.1429 28 1 4.4868 9.4044 -1.2914 29 1 3.7414 6.7581 1.8897 30 1 2.5667 1.0240 2.7797 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315120.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:49 Heat of formation + Delta-G solvation = -43.180921 kcal Electronic energy + Delta-G solvation = -15401.640329 eV Core-core repulsion = 12865.570448 eV Total energy + Delta-G solvation = -2536.069881 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90629 -38.32846 -36.64307 -35.14192 -33.45638 -30.97365 -29.35148 -27.76459 -25.00810 -23.64624 -22.49355 -21.41599 -19.40569 -18.71593 -17.93791 -17.05211 -16.69644 -16.18622 -15.61729 -15.32042 -14.82412 -14.57407 -14.29663 -14.09504 -14.03557 -13.27198 -13.15185 -12.91067 -12.76687 -12.41715 -12.18285 -11.80902 -11.70748 -11.55700 -11.49520 -11.26695 -11.07181 -10.11634 -9.19234 -9.01060 -8.57948 -6.47263 -0.02144 0.30052 1.02001 1.08496 1.23634 1.39023 1.58853 1.77088 2.08738 2.58718 3.14407 3.30650 3.83633 3.98166 4.18401 4.41463 4.47673 4.59804 4.68828 4.76065 4.88716 4.98397 5.11146 5.15617 5.22498 5.39548 5.45052 5.50196 5.59371 5.66337 5.96544 6.19530 6.41694 6.71504 6.84411 8.06043 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.007587 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.670676 B = 3689.517845 C = 4235.528931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.094 4.094 4 C -0.111 4.111 5 C -0.091 4.091 6 C -0.092 4.092 7 C 0.069 3.931 8 C -0.447 4.447 9 H 0.070 0.930 10 C 0.056 3.944 11 N -0.837 5.837 12 Si 0.965 3.035 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.258 1.258 16 C -0.473 4.473 17 S 0.090 5.910 18 C -0.170 4.170 19 C 0.121 3.879 20 O -0.491 6.491 21 H 0.040 0.960 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.161 0.839 27 H 0.122 0.878 28 H 0.296 0.704 29 H 0.127 0.873 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 -14.099 2.970 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.097 4.097 4 C -0.132 4.132 5 C -0.111 4.111 6 C -0.101 4.101 7 C 0.059 3.941 8 C -0.478 4.478 9 H 0.088 0.912 10 C -0.161 4.161 11 N -0.463 5.463 12 Si 0.790 3.210 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.182 1.182 16 C -0.607 4.607 17 S 0.353 5.647 18 C -0.286 4.286 19 C 0.070 3.930 20 O -0.303 6.303 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.179 0.821 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.145 0.855 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.847 -13.607 4.301 15.422 hybrid contribution 0.772 1.323 -1.055 1.860 sum -5.075 -12.284 3.246 13.682 Atomic orbital electron populations 1.21700 0.94467 1.02407 1.01366 1.20426 0.96289 0.89682 1.04056 1.20301 1.00101 0.98079 0.91236 1.21000 1.00001 0.93588 0.98657 1.21103 0.99002 0.94850 0.96105 1.19552 1.02354 0.94360 0.93854 1.17756 0.92546 0.91280 0.92471 1.18966 1.38066 0.91044 0.99767 0.91228 1.26649 0.94233 0.97355 0.97842 1.69801 1.31936 1.07317 1.37212 0.85434 0.80499 0.77037 0.77999 1.19621 1.20181 1.18218 1.23885 1.33881 1.05784 0.97150 1.81417 1.72001 1.03141 1.08181 1.23351 1.07726 0.99390 0.98131 1.17569 1.00502 0.88121 0.86804 1.84781 1.39966 1.70742 1.34845 0.94076 0.93081 0.90378 0.88953 0.89968 0.82141 0.85996 0.89372 0.85527 0.74147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.89 71.98 0.71 -2.08 16 2 C -0.07 -1.34 5.77 29.85 0.17 -1.17 16 3 C -0.09 -2.73 5.14 -19.80 -0.10 -2.83 16 4 C -0.11 -3.38 9.65 22.17 0.21 -3.16 16 5 C -0.09 -3.58 9.86 22.68 0.22 -3.35 16 6 C -0.09 -4.31 6.02 -20.25 -0.12 -4.43 16 7 C 0.07 3.69 5.34 -20.87 -0.11 3.58 16 8 C -0.45 -25.31 9.58 23.25 0.22 -25.09 16 9 H 0.07 4.09 7.89 -2.91 -0.02 4.07 16 10 C 0.06 3.06 5.45 85.16 0.46 3.52 16 11 N -0.84 -46.02 13.94 21.80 0.30 -45.71 16 12 Si 0.96 45.64 24.56 68.60 1.68 47.33 16 13 H -0.27 -12.47 6.65 99.48 0.66 -11.81 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.26 -12.78 6.77 99.48 0.67 -12.11 16 16 C -0.47 -24.32 8.08 67.40 0.54 -23.78 16 17 S 0.09 3.94 22.93 -56.49 -1.30 2.64 16 18 C -0.17 -7.25 6.39 23.00 0.15 -7.10 16 19 C 0.12 4.13 6.70 22.73 0.15 4.28 16 20 O -0.49 -13.92 12.57 -92.68 -1.16 -15.08 16 21 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 25 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 26 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.12 4.73 7.89 -2.91 -0.02 4.71 16 28 H 0.30 14.64 8.30 -92.71 -0.77 13.87 16 29 H 0.13 6.63 4.35 -2.91 -0.01 6.61 16 30 H 0.40 7.54 9.06 -74.06 -0.67 6.87 16 Total: -1.00 -64.51 268.11 2.47 -62.04 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.42 Total: 10.40 kcal Atomic # 6 Polarization: -64.13 SS G_CDS: 2.52 Total: -61.61 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.30 Total: -45.71 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.16 Total: -15.08 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.68 Total: 47.33 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.30 Total: 2.64 kcal Total: -64.51 2.47 -62.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315120.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.859 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds