Wall clock time and date at job start Mon Mar 30 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46913 * 2 1 4 4 C 1.35720 * 119.83198 * 269.98304 * 3 2 1 5 5 O 1.35838 * 119.61671 * 359.97438 * 4 3 2 6 6 C 1.42427 * 120.76383 * 179.97438 * 4 3 2 7 7 C 1.40366 * 128.63393 * 180.02562 * 6 4 3 8 8 C 1.32569 * 115.88270 * 180.02562 * 7 6 4 9 9 S 1.75482 * 110.81543 * 359.97438 * 8 7 6 10 10 C 1.40295 * 118.97745 * 359.97438 * 6 4 3 11 11 C 1.38907 * 120.19064 * 359.76743 * 10 6 4 12 12 C 1.40451 * 120.07806 * 0.49047 * 11 10 6 13 13 C 1.40994 * 120.17588 * 179.76916 * 12 11 10 14 14 H 1.07999 * 120.00696 * 153.42075 * 13 12 11 15 15 C 1.39841 * 119.99724 * 333.14306 * 13 12 11 16 16 N 1.30903 * 120.00164 * 344.04423 * 15 13 12 17 17 Si 1.86805 * 119.99751 * 164.05332 * 15 13 12 18 18 H 1.48498 * 109.46981 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47059 * 119.99939 * 17 15 13 20 20 H 1.48505 * 109.46673 * 239.99547 * 17 15 13 21 21 H 1.09002 * 109.46795 * 299.99297 * 1 2 3 22 22 H 1.08993 * 109.47274 * 59.99960 * 1 2 3 23 23 H 1.09004 * 109.46881 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47531 * 240.00591 * 2 1 3 25 25 H 1.08995 * 109.47554 * 119.99579 * 2 1 3 26 26 H 0.96704 * 114.00322 * 90.00156 * 5 4 3 27 27 H 1.08005 * 122.05853 * 359.96803 * 7 6 4 28 28 H 1.08002 * 124.59276 * 179.97438 * 8 7 6 29 29 H 1.08008 * 119.95924 * 180.25020 * 11 10 6 30 30 H 0.97004 * 120.00346 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2576 2.0573 -1.1774 5 8 2.0283 1.4060 -2.3472 6 6 2.7318 3.4001 -1.2005 7 6 3.0177 4.2096 -2.3111 8 6 3.4502 5.4329 -2.0396 9 16 3.5412 5.6918 -0.3063 10 6 2.9636 4.0602 0.0156 11 6 2.7274 3.4093 1.2198 12 6 2.2649 2.0831 1.2242 13 6 2.0291 1.4188 2.4452 14 1 1.3064 0.6177 2.4935 15 6 2.7352 1.7934 3.5927 16 7 3.8166 2.5235 3.4866 17 14 2.1355 1.2517 5.2769 18 1 0.9004 0.4412 5.1254 19 1 3.1857 0.4357 5.9374 20 1 1.8434 2.4481 6.1066 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.1289 1.5115 -2.6864 27 1 2.8938 3.8570 -3.3245 28 1 3.7111 6.1704 -2.7842 29 1 2.9032 3.9223 2.1538 30 1 4.3062 2.7837 4.2825 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:21 Heat of formation + Delta-G solvation = -24.035487 kcal Electronic energy + Delta-G solvation = -15678.462565 eV Core-core repulsion = 13143.222892 eV Total energy + Delta-G solvation = -2535.239673 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05181 -36.03168 -35.44052 -33.30832 -31.77681 -28.62935 -27.94943 -25.35217 -23.03784 -21.89024 -20.87045 -18.84679 -18.20575 -16.69912 -15.99850 -15.25982 -15.00414 -14.14562 -14.02206 -13.47638 -13.16206 -12.57324 -12.45149 -12.20014 -12.05096 -11.64341 -11.51336 -11.37029 -10.96587 -10.70851 -10.43902 -10.33636 -10.12679 -9.82186 -9.73466 -9.28997 -9.10181 -8.30614 -7.34483 -6.99901 -6.59385 -4.53824 1.84194 2.58892 2.69791 2.86702 2.96521 3.01204 3.08676 3.48202 3.75690 4.35279 5.13553 5.34612 5.65224 5.83345 5.90417 6.13275 6.15930 6.37084 6.46964 6.57840 6.76753 6.80315 6.85505 6.93868 7.00286 7.16462 7.24781 7.54380 7.62035 7.67492 7.91425 8.24845 8.45085 8.59800 8.72569 9.92656 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.009703 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.160807 B = 2885.132947 C = 4092.547809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.182 4.182 4 C 0.160 3.840 5 O -0.504 6.504 6 C -0.229 4.229 7 C -0.066 4.066 8 C -0.269 4.269 9 S -0.001 6.001 10 C -0.064 4.064 11 C -0.161 4.161 12 C 0.139 3.861 13 C -0.433 4.433 14 H 0.090 0.910 15 C 0.071 3.929 16 N -0.773 5.773 17 Si 0.912 3.088 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.269 1.269 21 H 0.056 0.944 22 H 0.041 0.959 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.373 0.627 27 H 0.119 0.881 28 H 0.144 0.856 29 H 0.124 0.876 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -0.344 -2.972 4.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.184 4.184 4 C 0.114 3.886 5 O -0.313 6.313 6 C -0.234 4.234 7 C -0.096 4.096 8 C -0.402 4.402 9 S 0.258 5.742 10 C -0.179 4.179 11 C -0.188 4.188 12 C 0.132 3.868 13 C -0.462 4.462 14 H 0.108 0.892 15 C -0.149 4.149 16 N -0.396 5.396 17 Si 0.735 3.265 18 H -0.181 1.181 19 H -0.197 1.197 20 H -0.194 1.194 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.226 0.774 27 H 0.137 0.863 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.587 0.847 -1.997 3.376 hybrid contribution -0.878 -1.044 -0.252 1.388 sum -3.465 -0.197 -2.250 4.136 Atomic orbital electron populations 1.21686 0.96655 1.00014 1.01387 1.20125 0.94455 0.93798 1.01682 1.19621 1.09935 0.96601 0.92281 1.17608 0.98813 0.88177 0.84019 1.84696 1.34566 1.73474 1.38557 1.17950 1.18033 0.95521 0.91938 1.19647 0.98742 0.92881 0.98290 1.24482 1.16659 1.01367 0.97646 1.83637 1.74072 1.14650 1.01827 1.22208 1.03412 0.95197 0.97072 1.20610 1.09291 0.94654 0.94209 1.17183 0.88072 0.90165 0.91369 1.19660 1.18861 1.15477 0.92180 0.89206 1.26039 0.93444 0.93557 1.01906 1.69863 1.11140 1.26332 1.32313 0.86184 0.80134 0.79540 0.80606 1.18057 1.19689 1.19434 0.92483 0.93944 0.93794 0.92500 0.91055 0.77383 0.86323 0.83841 0.85824 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.86 37.16 0.37 -1.95 16 2 C -0.06 -1.23 5.18 -27.88 -0.14 -1.37 16 3 C -0.18 -4.18 5.14 -104.43 -0.54 -4.72 16 4 C 0.16 3.59 6.68 -38.87 -0.26 3.33 16 5 O -0.50 -9.65 12.25 -19.23 -0.24 -9.89 16 6 C -0.23 -5.34 5.90 -106.71 -0.63 -5.97 16 7 C -0.07 -1.36 9.96 -40.69 -0.41 -1.76 16 8 C -0.27 -5.24 11.10 28.83 0.32 -4.92 16 9 S 0.00 -0.03 23.29 -107.50 -2.50 -2.53 16 10 C -0.06 -1.56 6.46 -38.56 -0.25 -1.81 16 11 C -0.16 -4.14 8.70 -38.50 -0.33 -4.47 16 12 C 0.14 3.46 5.54 -106.93 -0.59 2.87 16 13 C -0.43 -10.43 8.08 -37.94 -0.31 -10.73 16 14 H 0.09 2.03 6.53 -52.49 -0.34 1.69 16 15 C 0.07 1.66 5.15 -17.35 -0.09 1.57 16 16 N -0.77 -18.95 10.99 55.54 0.61 -18.34 16 17 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 21 H 0.06 0.99 7.83 -51.93 -0.41 0.59 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.06 7.44 -51.93 -0.39 0.68 16 25 H 0.07 1.43 6.76 -51.93 -0.35 1.08 16 26 H 0.37 5.37 9.06 45.56 0.41 5.78 16 27 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 28 H 0.14 2.34 8.06 -52.49 -0.42 1.91 16 29 H 0.12 3.28 6.24 -52.48 -0.33 2.95 16 30 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -27.10 269.75 -8.18 -35.29 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -2.23 Total: 9.07 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -2.86 Total: -29.94 kcal Atomic # 7 Polarization: -18.95 SS G_CDS: 0.61 Total: -18.34 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.24 Total: -9.89 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.50 Total: -2.53 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.10 -8.18 -35.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.251 kcal (2) G-P(sol) polarization free energy of solvation -27.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds