Wall clock time and date at job start Mon Mar 30 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47346 * 2 1 4 4 C 1.35793 * 119.70750 * 99.99414 * 3 2 1 5 5 C 1.41988 * 120.55973 * 180.02562 * 4 3 2 6 6 C 1.39724 * 128.46585 * 180.26875 * 5 4 3 7 7 C 1.36975 * 115.05249 * 180.17138 * 6 5 4 8 8 C 1.39871 * 124.82414 * 179.85384 * 7 6 5 9 9 H 1.08002 * 120.00386 * 10.51085 * 8 7 6 10 10 C 1.40121 * 120.00161 * 190.50772 * 8 7 6 11 11 N 1.30802 * 120.00184 * 174.65148 * 10 8 7 12 12 Si 1.86799 * 119.99865 * 354.65118 * 10 8 7 13 13 H 1.48493 * 109.47319 * 179.97438 * 12 10 8 14 14 H 1.48506 * 109.47175 * 300.00106 * 12 10 8 15 15 H 1.48504 * 109.47059 * 59.99881 * 12 10 8 16 16 S 1.75456 * 110.35160 * 359.58800 * 7 6 5 17 17 C 1.40449 * 118.67552 * 0.02562 * 5 4 3 18 18 C 1.39413 * 119.83629 * 359.97438 * 17 5 4 19 19 C 1.38315 * 120.24612 * 0.02562 * 18 17 5 20 20 O 1.35787 * 119.94931 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.47150 * 179.97438 * 1 2 3 22 22 H 1.08989 * 109.47413 * 299.99832 * 1 2 3 23 23 H 1.09005 * 109.47178 * 60.00325 * 1 2 3 24 24 H 1.09006 * 109.47413 * 240.00482 * 2 1 3 25 25 H 1.09001 * 109.47010 * 120.00158 * 2 1 3 26 26 H 1.08006 * 119.72243 * 0.03149 * 4 3 2 27 27 H 1.08009 * 122.47077 * 359.97438 * 6 5 4 28 28 H 0.97001 * 119.99844 * 0.03708 * 11 10 8 29 29 H 1.08008 * 119.88039 * 179.97438 * 18 17 5 30 30 H 0.96702 * 114.00298 * 269.99515 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4497 1.9870 1.1616 5 6 2.9259 3.3245 1.1824 6 6 3.3960 4.0628 2.2716 7 6 3.7876 5.3424 1.9792 8 6 4.2862 6.2579 2.9118 9 1 4.5450 5.9282 3.9072 10 6 4.4500 7.6029 2.5547 11 7 4.8162 8.4786 3.4547 12 14 4.1454 8.1453 0.7933 13 1 4.3849 9.6062 0.6768 14 1 5.0679 7.4180 -0.1152 15 1 2.7407 7.8430 0.4182 16 16 3.5819 5.6674 0.2673 17 6 2.9557 4.0482 -0.0209 18 6 2.5226 3.4478 -1.2022 19 6 2.0636 2.1430 -1.1931 20 8 1.6427 1.5644 -2.3471 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 2.4192 1.4152 2.0773 27 1 3.4439 3.6556 3.2708 28 1 4.9749 8.1968 4.3692 29 1 2.5448 4.0038 -2.1280 30 1 0.7005 1.6863 -2.5275 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:27 Heat of formation + Delta-G solvation = -42.251332 kcal Electronic energy + Delta-G solvation = -15198.415163 eV Core-core repulsion = 12662.385591 eV Total energy + Delta-G solvation = -2536.029571 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.18328 -36.61728 -34.88065 -33.94014 -32.13449 -29.27181 -28.64498 -24.94138 -23.58476 -21.48223 -21.18950 -19.03740 -18.83997 -17.71607 -15.94393 -15.53358 -14.97567 -14.49016 -14.34104 -13.54600 -13.33436 -13.01245 -12.89654 -12.62153 -12.42873 -12.18308 -11.79056 -11.32314 -11.10329 -10.98607 -10.66895 -10.55148 -10.21212 -9.95693 -9.73374 -9.53685 -8.82185 -8.57472 -7.83173 -7.49838 -6.66575 -4.78772 1.76304 2.12045 2.35803 2.90797 2.99386 3.05197 3.33701 3.51379 3.74110 4.41091 4.81789 4.95619 5.24362 5.30747 5.60315 5.63755 5.88186 6.05238 6.06496 6.22560 6.37545 6.44624 6.62614 6.72879 6.91211 7.00600 7.10648 7.22291 7.28850 7.44266 7.65153 7.79237 7.99466 8.23581 8.33589 9.53094 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.043949 B = 0.006656 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.945682 B = 4206.018158 C = 4719.026264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.082 4.082 4 C -0.142 4.142 5 C 0.031 3.969 6 C -0.363 4.363 7 C 0.067 3.933 8 C -0.431 4.431 9 H 0.098 0.902 10 C 0.049 3.951 11 N -0.784 5.784 12 Si 0.917 3.083 13 H -0.224 1.224 14 H -0.201 1.201 15 H -0.198 1.198 16 S -0.032 6.032 17 C -0.216 4.216 18 C -0.069 4.069 19 C 0.017 3.983 20 O -0.495 6.495 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.294 0.706 29 H 0.110 0.890 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 -6.052 -5.526 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.162 4.162 5 C 0.023 3.977 6 C -0.387 4.387 7 C -0.051 4.051 8 C -0.465 4.465 9 H 0.116 0.884 10 C -0.176 4.176 11 N -0.405 5.405 12 Si 0.739 3.261 13 H -0.147 1.147 14 H -0.127 1.127 15 H -0.123 1.123 16 S 0.223 5.777 17 C -0.327 4.327 18 C -0.092 4.092 19 C -0.029 4.029 20 O -0.303 6.303 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.259 -3.641 -7.289 9.193 hybrid contribution -0.644 -2.303 2.170 3.229 sum -4.902 -5.944 -5.119 9.250 Atomic orbital electron populations 1.21675 0.95559 1.00863 1.01774 1.20367 0.95521 0.93442 1.02065 1.19334 1.00747 0.95770 0.92608 1.20300 1.05122 0.94146 0.96596 1.18059 0.94649 0.92883 0.92076 1.19525 1.25311 0.95892 0.97990 1.21267 0.95337 0.96209 0.92255 1.20423 1.32736 0.93736 0.99562 0.88417 1.27398 0.90922 0.92336 1.06914 1.70548 1.27015 1.37666 1.05244 0.84565 0.84800 0.83200 0.73524 1.14708 1.12713 1.12334 1.84533 1.72100 1.13295 1.07770 1.22499 1.14364 0.99374 0.96511 1.20401 0.99578 0.93468 0.95761 1.17599 1.08655 0.91678 0.84969 1.84826 1.28706 1.77268 1.39476 0.93006 0.92758 0.93061 0.91139 0.91865 0.87315 0.87026 0.89450 0.87208 0.78240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.39 16 2 C -0.08 -1.12 5.70 -27.88 -0.16 -1.28 16 3 C -0.08 -1.53 5.10 -105.03 -0.54 -2.06 16 4 C -0.14 -2.91 9.63 -39.02 -0.38 -3.28 16 5 C 0.03 0.72 5.86 -107.07 -0.63 0.09 16 6 C -0.36 -8.96 10.14 -39.48 -0.40 -9.36 16 7 C 0.07 1.68 5.95 -39.43 -0.23 1.44 16 8 C -0.43 -10.88 9.70 -38.26 -0.37 -11.25 16 9 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 10 C 0.05 1.19 5.52 -17.28 -0.10 1.09 16 11 N -0.78 -19.16 13.66 55.56 0.76 -18.41 16 12 Si 0.92 18.84 24.49 -169.99 -4.16 14.68 16 13 H -0.22 -4.32 7.11 56.52 0.40 -3.92 16 14 H -0.20 -3.98 6.31 60.24 0.38 -3.60 16 15 H -0.20 -3.96 6.34 59.42 0.38 -3.58 16 16 S -0.03 -0.73 15.29 -107.50 -1.64 -2.37 16 17 C -0.22 -4.97 6.47 -38.31 -0.25 -5.21 16 18 C -0.07 -1.42 10.00 -39.12 -0.39 -1.82 16 19 C 0.02 0.32 6.67 -39.08 -0.26 0.06 16 20 O -0.50 -8.05 12.62 -19.07 -0.24 -8.29 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.60 7.60 -51.93 -0.39 0.21 16 24 H 0.07 1.02 7.84 -51.93 -0.41 0.62 16 25 H 0.06 0.87 7.95 -51.93 -0.41 0.45 16 26 H 0.11 2.02 7.99 -52.48 -0.42 1.60 16 27 H 0.11 2.66 8.06 -52.48 -0.42 2.24 16 28 H 0.29 6.89 8.72 -40.82 -0.36 6.54 16 29 H 0.11 2.06 8.06 -52.48 -0.42 1.64 16 30 H 0.37 4.31 8.61 45.56 0.39 4.70 16 LS Contribution 265.60 15.07 4.00 4.00 Total: -1.00 -26.83 265.60 -7.17 -34.00 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -2.55 Total: 9.35 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: -3.33 Total: -32.96 kcal Atomic # 7 Polarization: -19.16 SS G_CDS: 0.76 Total: -18.41 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.24 Total: -8.29 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.16 Total: 14.68 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -1.64 Total: -2.37 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.83 -7.17 -34.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.252 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds