Wall clock time and date at job start Mon Mar 30 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47628 * 2 1 4 4 C 1.32509 * 124.61199 * 89.71740 * 3 2 1 5 5 C 1.40507 * 115.86341 * 179.79210 * 4 3 2 6 6 C 1.42226 * 128.53192 * 180.18196 * 5 4 3 7 7 C 1.35108 * 121.02883 * 180.32512 * 6 5 4 8 8 C 1.41240 * 120.44677 * 359.97438 * 7 6 5 9 9 C 1.40839 * 120.25441 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99884 * 154.26120 * 9 8 7 11 11 C 1.39815 * 119.99788 * 334.26636 * 9 8 7 12 12 N 1.30959 * 120.00390 * 343.29784 * 11 9 8 13 13 Si 1.86801 * 119.99760 * 163.30231 * 11 9 8 14 14 H 1.48502 * 109.47091 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46939 * 119.99651 * 13 11 9 16 16 H 1.48503 * 109.46948 * 239.99725 * 13 11 9 17 17 C 1.40951 * 119.49225 * 0.02562 * 8 7 6 18 18 O 1.35651 * 120.08446 * 179.97438 * 17 8 7 19 19 C 1.39609 * 119.82771 * 0.02562 * 17 8 7 20 20 S 1.75480 * 124.61602 * 270.02992 * 3 2 1 21 21 H 1.08999 * 109.46629 * 59.99854 * 1 2 3 22 22 H 1.08994 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46762 * 300.00123 * 1 2 3 24 24 H 1.09005 * 109.47053 * 120.00235 * 2 1 3 25 25 H 1.09002 * 109.46762 * 239.99877 * 2 1 3 26 26 H 1.08003 * 122.06454 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.49081 * 0.30613 * 6 5 4 28 28 H 1.07996 * 119.77629 * 180.02562 * 7 6 5 29 29 H 0.96999 * 120.00181 * 180.02562 * 12 11 9 30 30 H 0.96707 * 113.99500 * 270.02278 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2783 2.1321 1.0906 5 6 2.7467 3.4395 0.8769 6 6 3.0950 4.4246 1.8418 7 6 3.5269 5.6477 1.4637 8 6 3.6423 5.9743 0.0944 9 6 4.0935 7.2503 -0.2952 10 1 4.5718 7.3844 -1.2542 11 6 3.9224 8.3434 0.5597 12 7 3.0737 8.2702 1.5544 13 14 4.9041 9.9083 0.2827 14 1 5.7874 9.7360 -0.8985 15 1 3.9735 11.0408 0.0446 16 1 5.7322 10.1919 1.4824 17 6 3.3026 5.0133 -0.8792 18 8 3.4085 5.3143 -2.1976 19 6 2.8558 3.7514 -0.4830 20 16 2.3641 2.3608 -1.4442 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 2.1315 1.7305 2.0823 27 1 3.0127 4.1916 2.8931 28 1 3.7864 6.3803 2.2135 29 1 2.9548 9.0286 2.1472 30 1 2.6062 5.6962 -2.5795 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315522.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:06 Heat of formation + Delta-G solvation = -26.703923 kcal Electronic energy + Delta-G solvation = -15194.889065 eV Core-core repulsion = 12659.533680 eV Total energy + Delta-G solvation = -2535.355385 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.55301 -36.39299 -34.95942 -33.80744 -31.63351 -28.87046 -28.19361 -25.35949 -23.10960 -22.06997 -20.50697 -19.27271 -17.81580 -16.92701 -15.64507 -15.45353 -14.70005 -14.49079 -13.89582 -13.51534 -13.42610 -12.85238 -12.72624 -12.36240 -11.82504 -11.75004 -11.50069 -11.35966 -11.11586 -10.89027 -10.68330 -10.50561 -10.07952 -9.83958 -9.69841 -9.23715 -9.20469 -8.33936 -7.33211 -7.12799 -6.63462 -4.53683 1.83275 2.57612 2.66919 2.82518 2.94315 3.00873 3.04400 3.40711 3.73320 4.39135 5.22910 5.24414 5.36304 5.60654 5.67839 5.88363 6.02564 6.11624 6.19209 6.26110 6.40335 6.57398 6.76612 6.81218 6.94654 7.08111 7.17268 7.54429 7.66830 7.77925 7.89905 8.24034 8.50696 8.53561 9.03767 9.83721 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.006055 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.471526 B = 4623.527049 C = 5054.064371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C -0.234 4.234 4 C -0.075 4.075 5 C -0.193 4.193 6 C -0.076 4.076 7 C -0.133 4.133 8 C 0.114 3.886 9 C -0.423 4.423 10 H 0.092 0.908 11 C 0.070 3.930 12 N -0.777 5.777 13 Si 0.918 3.082 14 H -0.256 1.256 15 H -0.271 1.271 16 H -0.269 1.269 17 C -0.025 4.025 18 O -0.486 6.486 19 C -0.081 4.081 20 S 0.020 5.980 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.287 0.713 30 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -5.546 -0.053 6.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.349 4.349 4 C -0.104 4.104 5 C -0.199 4.199 6 C -0.096 4.096 7 C -0.153 4.153 8 C 0.107 3.893 9 C -0.452 4.452 10 H 0.110 0.890 11 C -0.150 4.150 12 N -0.401 5.401 13 Si 0.741 3.259 14 H -0.179 1.179 15 H -0.196 1.196 16 H -0.194 1.194 17 C -0.078 4.078 18 O -0.293 6.293 19 C -0.197 4.197 20 S 0.281 5.719 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.098 0.902 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.042 -6.005 -1.288 6.472 hybrid contribution -0.114 1.277 1.457 1.941 sum -2.155 -4.728 0.169 5.199 Atomic orbital electron populations 1.21783 0.95472 1.00747 1.02308 1.19863 0.95293 0.90909 1.01770 1.23387 1.15468 1.00300 0.95753 1.19641 0.99775 0.93323 0.97699 1.17644 1.14856 0.95346 0.92042 1.20379 0.99790 0.93066 0.96398 1.20866 1.02830 0.95214 0.96377 1.17766 0.88631 0.92026 0.90833 1.19680 1.30588 0.91622 1.03261 0.88955 1.26122 0.93697 1.01555 0.93638 1.69870 1.25219 1.32403 1.12600 0.86084 0.80181 0.79622 0.79998 1.17939 1.19628 1.19351 1.17515 1.14984 0.92043 0.83239 1.84792 1.39294 1.83874 1.21343 1.22611 1.04333 0.96903 0.95842 1.83578 1.72524 1.06233 1.09547 0.92654 0.93044 0.92642 0.91297 0.91884 0.86428 0.88523 0.85527 0.90204 0.79570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.90 37.16 0.37 -1.51 16 2 C -0.04 -0.56 6.39 -27.88 -0.18 -0.74 16 3 C -0.23 -4.39 5.68 -36.22 -0.21 -4.60 16 4 C -0.07 -1.50 9.97 -40.64 -0.41 -1.90 16 5 C -0.19 -4.49 5.88 -106.87 -0.63 -5.11 16 6 C -0.08 -1.75 9.99 -39.16 -0.39 -2.14 16 7 C -0.13 -3.31 8.57 -39.56 -0.34 -3.65 16 8 C 0.11 2.96 5.57 -106.75 -0.59 2.36 16 9 C -0.42 -10.68 8.68 -38.01 -0.33 -11.01 16 10 H 0.09 2.31 7.64 -52.49 -0.40 1.91 16 11 C 0.07 1.64 5.15 -17.33 -0.09 1.55 16 12 N -0.78 -18.49 10.96 55.54 0.61 -17.88 16 13 Si 0.92 17.40 29.59 -169.99 -5.03 12.37 16 14 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 15 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 17 C -0.03 -0.63 6.76 -38.04 -0.26 -0.89 16 18 O -0.49 -11.40 12.75 -18.65 -0.24 -11.64 16 19 C -0.08 -1.96 6.42 -38.43 -0.25 -2.21 16 20 S 0.02 0.41 23.24 -107.50 -2.50 -2.09 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 27 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.13 3.14 6.19 -52.49 -0.32 2.81 16 29 H 0.29 6.11 8.30 -40.82 -0.34 5.78 16 30 H 0.35 6.92 9.06 45.56 0.41 7.34 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -27.29 274.82 -8.72 -36.01 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.41 Total: 8.94 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -3.30 Total: -29.85 kcal Atomic # 7 Polarization: -18.49 SS G_CDS: 0.61 Total: -17.88 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.24 Total: -11.64 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.50 Total: -2.09 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.29 -8.72 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315522.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.310 kcal (2) G-P(sol) polarization free energy of solvation -27.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds